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Items: 1 to 50 of 306

1.

Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks.

Hiraga SI, Monerawela C, Katou Y, Shaw S, Clark KR, Shirahige K, Donaldson AD.

EMBO Rep. 2019 Jul;20(7):e48152. doi: 10.15252/embr.201948152. Epub 2019 Jun 26. No abstract available.

2.

Human RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling.

Garzón J, Ursich S, Lopes M, Hiraga SI, Donaldson AD.

Cell Rep. 2019 May 28;27(9):2558-2566.e4. doi: 10.1016/j.celrep.2019.05.002.

3.

High-Throughput Screening and Characterization of a High-Density Soybean Mutant Library Elucidate the Biosynthesis Pathway of Triterpenoid Saponins.

Krishnamurthy P, Fujisawa Y, Takahashi Y, Abe H, Yamane K, Mukaiyama K, Son HR, Hiraga S, Kaga A, Anai T, Tsukamoto C, Ishimoto M.

Plant Cell Physiol. 2019 May 1;60(5):1082-1097. doi: 10.1093/pcp/pcz025.

PMID:
30753604
4.

Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks.

Hiraga SI, Monerawela C, Katou Y, Shaw S, Clark KR, Shirahige K, Donaldson AD.

EMBO Rep. 2018 Sep;19(9). pii: e46222. doi: 10.15252/embr.201846222. Epub 2018 Aug 13. Erratum in: EMBO Rep. 2019 Jul;20(7):e48152.

5.

Rif1 acts through Protein Phosphatase 1 but independent of replication timing to suppress telomere extension in budding yeast.

Kedziora S, Gali VK, Wilson RHC, Clark KRM, Nieduszynski CA, Hiraga SI, Donaldson AD.

Nucleic Acids Res. 2018 May 4;46(8):3993-4003. doi: 10.1093/nar/gky132.

6.

Sucrose supply from leaves is required for aerenchymatous phellem formation in hypocotyl of soybean under waterlogged conditions.

Takahashi H, Xiaohua Q, Shimamura S, Yanagawa A, Hiraga S, Nakazono M.

Ann Bot. 2018 Mar 14;121(4):723-732. doi: 10.1093/aob/mcx205.

7.

CCR2 upregulation in DRG neurons plays a crucial role in gastric hyperalgesia associated with diabetic gastropathy.

Aye-Mon A, Hori K, Kozakai Y, Nakagawa T, Hiraga S, Nakamura T, Shiraishi Y, Okuda H, Ozaki N.

Mol Pain. 2018 Jan-Dec;14:1744806917751322. doi: 10.1177/1744806917751322.

8.

Topical thermal therapy with hot packs suppresses physical inactivity-induced mechanical hyperalgesia and up-regulation of NGF.

Nakagawa T, Hiraga SI, Mizumura K, Hori K, Ozaki N, Koeda T.

J Physiol Sci. 2018 Sep;68(5):629-637. doi: 10.1007/s12576-017-0574-4. Epub 2017 Oct 12.

PMID:
29027134
9.

Human RIF1 and protein phosphatase 1 stimulate DNA replication origin licensing but suppress origin activation.

Hiraga SI, Ly T, Garzón J, Hořejší Z, Ohkubo YN, Endo A, Obuse C, Boulton SJ, Lamond AI, Donaldson AD.

EMBO Rep. 2017 Mar;18(3):403-419. doi: 10.15252/embr.201641983. Epub 2017 Jan 11.

10.

Transcriptomic analysis reveals the flooding tolerant mechanism in flooding tolerant line and abscisic acid treated soybean.

Yin X, Hiraga S, Hajika M, Nishimura M, Komatsu S.

Plant Mol Biol. 2017 Mar;93(4-5):479-496. doi: 10.1007/s11103-016-0576-2. Epub 2016 Dec 23.

PMID:
28012053
11.

Experimental use of crosslinked gelatin glue for arterial hemostasis in cardiovascular surgery.

Yamashita K, Suzuki S, Tabayashi N, Abe T, Hayata Y, Hirose T, Hiraga S, Niwa K, Fukuba R, Takeda M, Ikada Y, Taniguchi S.

Biomed Mater Eng. 2015;25(4):361-70. doi: 10.3233/BME-151534.

PMID:
26407198
12.

Gelatin sealing sheet for arterial hemostasis and anti-adhesion in vascular surgery: a dog model study.

Hu Y, Yamashita K, Tabayashi N, Abe T, Hayata Y, Hirose T, Hiraga S, Tojo T, Suzuki S, Ikada Y, Taniguchi S.

Biomed Mater Eng. 2015;25(2):157-68. doi: 10.3233/BME-151266.

PMID:
25813954
13.

Dynamic nature of SecA and its associated proteins in Escherichia coli.

Adachi S, Murakawa Y, Hiraga S.

Front Microbiol. 2015 Feb 10;6:75. doi: 10.3389/fmicb.2015.00075. eCollection 2015.

14.

Quantitative proteomics reveals that peroxidases play key roles in post-flooding recovery in soybean roots.

Khan MN, Sakata K, Hiraga S, Komatsu S.

J Proteome Res. 2014 Dec 5;13(12):5812-28. doi: 10.1021/pr5007476. Epub 2014 Oct 16.

PMID:
25284625
15.

Analyses of flooding tolerance of soybean varieties at emergence and varietal differences in their proteomes.

Nanjo Y, Jang HY, Kim HS, Hiraga S, Woo SH, Komatsu S.

Phytochemistry. 2014 Oct;106:25-36. doi: 10.1016/j.phytochem.2014.06.017. Epub 2014 Jul 19.

PMID:
25053003
16.

[An operative case of a chronic traumatic thoracic aortic aneurysm 16 years after a jet skiing crash; report of a case].

Hirose T, Tabayashi N, Yoshikawa Y, Abe T, Hayata Y, Yamashita K, Hiraga S, Taniguchi S.

Kyobu Geka. 2014 Jun;67(6):486-8. Japanese.

PMID:
24917406
17.

SecA defects are accompanied by dysregulation of MukB, DNA gyrase, chromosome partitioning and DNA superhelicity in Escherichia coli.

Adachi S, Murakawa Y, Hiraga S.

Microbiology. 2014 Aug;160(Pt 8):1648-58. doi: 10.1099/mic.0.077685-0. Epub 2014 May 23.

18.

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.

Hiraga S, Alvino GM, Chang F, Lian HY, Sridhar A, Kubota T, Brewer BJ, Weinreich M, Raghuraman MK, Donaldson AD.

Genes Dev. 2014 Feb 15;28(4):372-83. doi: 10.1101/gad.231258.113.

19.

Analysis of flooding-responsive proteins localized in the nucleus of soybean root tips.

Komatsu S, Hiraga S, Nouri MZ.

Mol Biol Rep. 2014 Feb;41(2):1127-39. doi: 10.1007/s11033-013-2959-7. Epub 2014 Jan 3.

PMID:
24385303
20.

Regulatory modules controlling maize inflorescence architecture.

Eveland AL, Goldshmidt A, Pautler M, Morohashi K, Liseron-Monfils C, Lewis MW, Kumari S, Hiraga S, Yang F, Unger-Wallace E, Olson A, Hake S, Vollbrecht E, Grotewold E, Ware D, Jackson D.

Genome Res. 2014 Mar;24(3):431-43. doi: 10.1101/gr.166397.113. Epub 2013 Dec 4.

21.

The synthesis of cytosolic ascorbate peroxidases in germinating seeds and seedlings of soybean and their behavior under flooding stress.

Nishizawa K, Hiraga S, Yasue H, Chiba M, Tougou M, Nanjo Y, Komatsu S.

Biosci Biotechnol Biochem. 2013;77(11):2205-9. Epub 2013 Nov 7.

22.

Aβ43 is the earliest-depositing Aβ species in APP transgenic mouse brain and is converted to Aβ41 by two active domains of ACE.

Zou K, Liu J, Watanabe A, Hiraga S, Liu S, Tanabe C, Maeda T, Terayama Y, Takahashi S, Michikawa M, Komano H.

Am J Pathol. 2013 Jun;182(6):2322-31. doi: 10.1016/j.ajpath.2013.01.053. Epub 2013 Apr 4.

PMID:
23562443
23.

Comprehensive analysis of endoplasmic reticulum-enriched fraction in root tips of soybean under flooding stress using proteomics techniques.

Komatsu S, Kuji R, Nanjo Y, Hiraga S, Furukawa K.

J Proteomics. 2012 Dec 21;77:531-60. doi: 10.1016/j.jprot.2012.09.032. Epub 2012 Oct 2.

PMID:
23041469
24.

Organ-specific proteomics analysis for identification of response mechanism in soybean seedlings under flooding stress.

Khatoon A, Rehman S, Hiraga S, Makino T, Komatsu S.

J Proteomics. 2012 Oct 22;75(18):5706-23. doi: 10.1016/j.jprot.2012.07.031. Epub 2012 Jul 29.

PMID:
22850269
25.

TFIIIC localizes budding yeast ETC sites to the nuclear periphery.

Hiraga S, Botsios S, Donze D, Donaldson AD.

Mol Biol Cell. 2012 Jul;23(14):2741-54. doi: 10.1091/mbc.E11-04-0365. Epub 2012 Apr 11.

26.

Quantitative proteomic analysis of yeast DNA replication proteins.

Kubota T, Stead DA, Hiraga S, ten Have S, Donaldson AD.

Methods. 2012 Jun;57(2):196-202. doi: 10.1016/j.ymeth.2012.03.012. Epub 2012 Mar 23.

PMID:
22465796
27.

Organ-specific proteomic analysis of drought-stressed soybean seedlings.

Mohammadi PP, Moieni A, Hiraga S, Komatsu S.

J Proteomics. 2012 Mar 16;75(6):1906-23. doi: 10.1016/j.jprot.2011.12.041. Epub 2012 Jan 8.

PMID:
22245419
28.

Characterization of calnexin in soybean roots and hypocotyls under osmotic stress.

Nouri MZ, Hiraga S, Yanagawa Y, Sunohara Y, Matsumoto H, Komatsu S.

Phytochemistry. 2012 Feb;74:20-9. doi: 10.1016/j.phytochem.2011.11.005. Epub 2011 Dec 9.

PMID:
22169501
29.

Proteomics techniques for the development of flood tolerant crops.

Komatsu S, Hiraga S, Yanagawa Y.

J Proteome Res. 2012 Jan 1;11(1):68-78. doi: 10.1021/pr2008863. Epub 2011 Nov 15. Review.

PMID:
22029422
30.

A comparative proteomic analysis of the early response to compatible symbiotic bacteria in the roots of a supernodulating soybean variety.

Salavati A, Bushehri AA, Taleei A, Hiraga S, Komatsu S.

J Proteomics. 2012 Jan 4;75(3):819-32. doi: 10.1016/j.jprot.2011.09.022. Epub 2011 Oct 8.

PMID:
22005398
31.

Characterization of a novel flooding stress-responsive alcohol dehydrogenase expressed in soybean roots.

Komatsu S, Deschamps T, Hiraga S, Kato M, Chiba M, Hashiguchi A, Tougou M, Shimamura S, Yasue H.

Plant Mol Biol. 2011 Oct;77(3):309-22. doi: 10.1007/s11103-011-9812-y. Epub 2011 Aug 3. Erratum in: Plant Mol Biol. 2012 Jan;78(1-2):197. Thibaut, Deschamps [corrected to Deschamps, Thibaut].

PMID:
21811849
32.

Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint.

Kubota T, Hiraga S, Yamada K, Lamond AI, Donaldson AD.

Mol Cell Proteomics. 2011 Jul;10(7):M110.005561. doi: 10.1074/mcp.M110.005561. Epub 2011 Apr 19.

33.

The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.

Lian HY, Robertson ED, Hiraga S, Alvino GM, Collingwood D, McCune HJ, Sridhar A, Brewer BJ, Raghuraman MK, Donaldson AD.

Mol Biol Cell. 2011 May 15;22(10):1753-65. doi: 10.1091/mbc.E10-06-0549. Epub 2011 Mar 25.

34.

Early initiation of a replication origin tethered at the nuclear periphery.

Ebrahimi H, Robertson ED, Taddei A, Gasser SM, Donaldson AD, Hiraga S.

J Cell Sci. 2010 Apr 1;123(Pt 7):1015-9. doi: 10.1242/jcs.060392. Epub 2010 Mar 2.

35.

Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling.

Hiraga S, Sasaki K, Hibi T, Yoshida H, Uchida E, Kosugi S, Kato T, Mie T, Ito H, Katou S, Seo S, Matsui H, Ohashi Y, Mitsuhara I.

Mol Genet Genomics. 2009 Nov;282(5):517-29. doi: 10.1007/s00438-009-0483-1. Epub 2009 Oct 2.

PMID:
19798512
36.

[Partition mechanisms of plasmids and bacterial chromosomes].

Hiraga S, Adachi S.

Tanpakushitsu Kakusan Koso. 2008 Oct;53(13):1732-8. Review. Japanese. No abstract available.

PMID:
19044285
37.

Histone H3 lysine 56 acetylation by Rtt109 is crucial for chromosome positioning.

Hiraga S, Botsios S, Donaldson AD.

J Cell Biol. 2008 Nov 17;183(4):641-51. doi: 10.1083/jcb.200806065. Epub 2008 Nov 10.

38.

ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli.

Chen N, Zinchenko AA, Yoshikawa Y, Araki S, Adachi S, Yamazoe M, Hiraga S, Yoshikawa K.

J Bacteriol. 2008 May;190(10):3731-7. doi: 10.1128/JB.01863-07. Epub 2008 Mar 7.

39.

Cytosolic ascorbate peroxidase 2 (cAPX 2) is involved in the soybean response to flooding.

Shi F, Yamamoto R, Shimamura S, Hiraga S, Nakayama N, Nakamura T, Yukawa K, Hachinohe M, Matsumoto H, Komatsu S.

Phytochemistry. 2008 Apr;69(6):1295-303. doi: 10.1016/j.phytochem.2008.01.007. Epub 2008 Mar 4.

PMID:
18308350
40.

Dynamic events of sister chromosomes in the cell cycle of Escherichia coli.

Adachi S, Fukushima T, Hiraga S.

Genes Cells. 2008 Feb;13(2):181-97. doi: 10.1111/j.1365-2443.2007.01157.x.

41.

Characterization of two rice peroxidase promoters that respond to blast fungus-infection.

Sasaki K, Yuichi O, Hiraga S, Gotoh Y, Seo S, Mitsuhara I, Ito H, Matsui H, Ohashi Y.

Mol Genet Genomics. 2007 Dec;278(6):709-22. Epub 2007 Sep 6.

PMID:
17805575
42.

OriDB: a DNA replication origin database.

Nieduszynski CA, Hiraga S, Ak P, Benham CJ, Donaldson AD.

Nucleic Acids Res. 2007 Jan;35(Database issue):D40-6. Epub 2006 Oct 25.

43.

A novel wound-responsive cis-element, VWRE, of the vascular system-specific expression of a tobacco peroxidase gene, tpoxN1.

Sasaki K, Ito H, Mitsuhara I, Hiraga S, Seo S, Matsui H, Ohashi Y.

Plant Mol Biol. 2006 Nov;62(4-5):753-68. Epub 2006 Aug 29.

PMID:
16941212
44.

Interactions of environmental factors influencing pupal coloration in swallowtail butterfly Papilio xuthus.

Hiraga S.

J Insect Physiol. 2006 Aug;52(8):826-38. Epub 2006 May 13.

PMID:
16781726
45.

The Ctf18 RFC-like complex positions yeast telomeres but does not specify their replication time.

Hiraga S, Robertson ED, Donaldson AD.

EMBO J. 2006 Apr 5;25(7):1505-14. Epub 2006 Mar 9.

46.

Subcellular positioning of F plasmid mediated by dynamic localization of SopA and SopB.

Adachi S, Hori K, Hiraga S.

J Mol Biol. 2006 Mar 3;356(4):850-63. Epub 2005 Dec 20.

PMID:
16403518
47.

Localization of replication forks in wild-type and mukB mutant cells of Escherichia coli.

Adachi S, Kohiyama M, Onogi T, Hiraga S.

Mol Genet Genomics. 2005 Oct;274(3):264-71. Epub 2005 Oct 20.

PMID:
16133165
48.

Two different sensory mechanisms for the control of pupal protective coloration in butterflies.

Hiraga S.

J Insect Physiol. 2005 Sep;51(9):1033-40. Epub 2005 Aug 2.

PMID:
16061248
49.

Comparison of MukB homodimer versus MukBEF complex molecular architectures by electron microscopy reveals a higher-order multimerization.

Matoba K, Yamazoe M, Mayanagi K, Morikawa K, Hiraga S.

Biochem Biophys Res Commun. 2005 Aug 5;333(3):694-702.

PMID:
15979051
50.

The GTP binding protein Obg homolog ObgE is involved in ribosome maturation.

Sato A, Kobayashi G, Hayashi H, Yoshida H, Wada A, Maeda M, Hiraga S, Takeyasu K, Wada C.

Genes Cells. 2005 May;10(5):393-408.

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