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Items: 1 to 50 of 93

1.

Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study.

Staaf J, Glodzik D, Bosch A, Vallon-Christersson J, Reuterswärd C, Häkkinen J, Degasperi A, Amarante TD, Saal LH, Hegardt C, Stobart H, Ehinger A, Larsson C, Rydén L, Loman N, Malmberg M, Kvist A, Ehrencrona H, Davies HR, Borg Å, Nik-Zainal S.

Nat Med. 2019 Sep 30. doi: 10.1038/s41591-019-0582-4. [Epub ahead of print]

PMID:
31570822
2.

Cross comparison and prognostic assessment of breast cancer multigene signatures in a large population-based contemporary clinical series.

Vallon-Christersson J, Häkkinen J, Hegardt C, Saal LH, Larsson C, Ehinger A, Lindman H, Olofsson H, Sjöblom T, Wärnberg F, Ryden L, Loman N, Malmberg M, Borg Å, Staaf J.

Sci Rep. 2019 Aug 21;9(1):12184. doi: 10.1038/s41598-019-48570-x.

3.

Agreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancer.

Lundgren C, Bendahl PO, Borg Å, Ehinger A, Hegardt C, Larsson C, Loman N, Malmberg M, Olofsson H, Saal LH, Sjöblom T, Lindman H, Klintman M, Häkkinen J, Vallon-Christersson J, Fernö M, Rydén L, Ekholm M.

Breast Cancer Res Treat. 2019 Nov;178(2):459-467. doi: 10.1007/s10549-019-05378-7. Epub 2019 Aug 20.

PMID:
31432367
4.

Prediction of Lymph Node Metastasis in Breast Cancer by Gene Expression and Clinicopathological Models: Development and Validation within a Population-Based Cohort.

Dihge L, Vallon-Christersson J, Hegardt C, Saal LH, Häkkinen J, Larsson C, Ehinger A, Loman N, Malmberg M, Bendahl PO, Borg Å, Staaf J, Rydén L.

Clin Cancer Res. 2019 Jul 24. doi: 10.1158/1078-0432.CCR-19-0075. [Epub ahead of print]

PMID:
31340938
5.

The X-Linked DDX3X RNA Helicase Dictates Translation Reprogramming and Metastasis in Melanoma.

Phung B, Cieśla M, Sanna A, Guzzi N, Beneventi G, Cao Thi Ngoc P, Lauss M, Cabrita R, Cordero E, Bosch A, Rosengren F, Häkkinen J, Griewank K, Paschen A, Harbst K, Olsson H, Ingvar C, Carneiro A, Tsao H, Schadendorf D, Pietras K, Bellodi C, Jönsson G.

Cell Rep. 2019 Jun 18;27(12):3573-3586.e7. doi: 10.1016/j.celrep.2019.05.069.

6.

Impact of lower urinary tract symptoms on mortality: a 21-year follow-up among middle-aged and elderly Finnish men.

Åkerla J, Pesonen JS, Pöyhönen A, Häkkinen J, Koskimäki J, Huhtala H, Tammela TLJ, Auvinen A.

Prostate Cancer Prostatic Dis. 2019 May;22(2):317-323. doi: 10.1038/s41391-018-0108-z. Epub 2018 Nov 8.

PMID:
30410016
7.

Severity and bother of lower urinary tract symptoms among men aged 30-80 years: Tampere Ageing Male Urological Study (TAMUS).

Pöyhönen A, Åkerla J, Häkkinen JT, Koskimäki J, Tammela TLJ, Auvinen A.

Scand J Urol. 2018 Aug;52(4):296-301. doi: 10.1080/21681805.2018.1505944. Epub 2018 Nov 1.

PMID:
30382800
8.

Upper nasal hemifield location and nonspatial auditory tones accelerate visual detection during dichoptic viewing.

Mustonen T, Nuutinen M, Vainio L, Häkkinen J.

PLoS One. 2018 Jul 23;13(7):e0199962. doi: 10.1371/journal.pone.0199962. eCollection 2018.

9.

Microenvironmental control of breast cancer subtype elicited through paracrine platelet-derived growth factor-CC signaling.

Roswall P, Bocci M, Bartoschek M, Li H, Kristiansen G, Jansson S, Lehn S, Sjölund J, Reid S, Larsson C, Eriksson P, Anderberg C, Cortez E, Saal LH, Orsmark-Pietras C, Cordero E, Haller BK, Häkkinen J, Burvenich IJG, Lim E, Orimo A, Höglund M, Rydén L, Moch H, Scott AM, Eriksson U, Pietras K.

Nat Med. 2018 May;24(4):463-473. doi: 10.1038/nm.4494. Epub 2018 Mar 12.

10.

Frequent miRNA-convergent fusion gene events in breast cancer.

Persson H, Søkilde R, Häkkinen J, Pirona AC, Vallon-Christersson J, Kvist A, Mertens F, Borg Å, Mitelman F, Höglund M, Rovira C.

Nat Commun. 2017 Oct 5;8(1):788. doi: 10.1038/s41467-017-01176-1.

11.

CFS MATLAB toolbox: An experiment builder for continuous flash suppression (CFS) task.

Nuutinen M, Mustonen T, Häkkinen J.

Behav Res Methods. 2018 Oct;50(5):1933-1942. doi: 10.3758/s13428-017-0961-z.

PMID:
28917032
12.

Stereoscopy Amplifies Emotions Elicited by Facial Expressions.

Hakala J, Kätsyri J, Häkkinen J.

Iperception. 2015 Nov 20;6(6):2041669515615071. doi: 10.1177/2041669515615071. eCollection 2015 Dec.

13.

Turning water into rock: The inverted waves effect.

Häkkinen J, Gröhn L.

Iperception. 2016 Feb 1;7(1):2041669515627951. doi: 10.1177/2041669515627951. eCollection 2016 Jan-Feb.

14.

Perception of stereoscopic direct gaze: The effects of interaxial distance and emotional facial expressions.

Hakala J, Kätsyri J, Takala T, Häkkinen J.

J Vis. 2016 Jul 1;16(9):5. doi: 10.1167/16.9.5.

PMID:
27442954
15.

Population-level and Individual-level Bother of Lower Urinary Tract Symptoms Among 30- to 80-year-old Men.

Pöyhönen A, Auvinen A, Häkkinen JT, Koskimäki J, Tammela TL.

Urology. 2016 Sep;95:164-70. doi: 10.1016/j.urology.2016.06.023. Epub 2016 Jun 24.

PMID:
27349526
16.

Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic.

Winter C, Nilsson MP, Olsson E, George AM, Chen Y, Kvist A, Törngren T, Vallon-Christersson J, Hegardt C, Häkkinen J, Jönsson G, Grabau D, Malmberg M, Kristoffersson U, Rehn M, Gruvberger-Saal SK, Larsson C, Borg Å, Loman N, Saal LH.

Ann Oncol. 2016 Aug;27(8):1532-8. doi: 10.1093/annonc/mdw209. Epub 2016 May 18.

17.

CVD2014-A Database for Evaluating No-Reference Video Quality Assessment Algorithms.

Nuutinen M, Virtanen T, Vaahteranoksa M, Vuori T, Oittinen P, Hakkinen J.

IEEE Trans Image Process. 2016 Jul;25(7):3073-86. doi: 10.1109/TIP.2016.2562513. Epub 2016 May 3.

PMID:
27164589
18.

The effect of introspection on judgment and decision making is dependent on the quality of conscious thinking.

Leisti T, Häkkinen J.

Conscious Cogn. 2016 May;42:340-351. doi: 10.1016/j.concog.2016.04.008. Epub 2016 Apr 28.

PMID:
27131852
19.

Visual Performance With Small Concave and Convex Displays.

Mustonen T, Kimmel J, Hakala J, Häkkinen J.

Hum Factors. 2015 Sep;57(6):1029-50. doi: 10.1177/0018720815570090. Epub 2015 Feb 10.

PMID:
25850112
20.

The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine.

Saal LH, Vallon-Christersson J, Häkkinen J, Hegardt C, Grabau D, Winter C, Brueffer C, Tang MH, Reuterswärd C, Schulz R, Karlsson A, Ehinger A, Malina J, Manjer J, Malmberg M, Larsson C, Rydén L, Loman N, Borg Å.

Genome Med. 2015 Feb 2;7(1):20. doi: 10.1186/s13073-015-0131-9. eCollection 2015.

21.

VQone MATLAB toolbox: A graphical experiment builder for image and video quality evaluations: VQone MATLAB toolbox.

Nuutinen M, Virtanen T, Rummukainen O, Häkkinen J.

Behav Res Methods. 2016 Mar;48(1):138-50. doi: 10.3758/s13428-014-0555-y. Epub 2015 Jan 17.

PMID:
25595311
22.

CID2013: a database for evaluating no-reference image quality assessment algorithms.

Virtanen T, Nuutinen M, Vaahteranoksa M, Oittinen P, Hakkinen J.

IEEE Trans Image Process. 2015 Jan;24(1):390-402. doi: 10.1109/TIP.2014.2378061. Epub 2014 Dec 4.

PMID:
25494511
23.

NAPL migration and ecotoxicity of conventional and renewable fuels in accidental spill scenarios.

Malk V, Barreto Tejera E, Simpanen S, Dahl M, Mäkelä R, Häkkinen J, Kiiski A, Penttinen OP.

Environ Sci Pollut Res Int. 2014;21(16):9861-76. doi: 10.1007/s11356-014-2851-6. Epub 2014 Apr 25.

PMID:
24764004
24.

Molecular and genetic diversity in the metastatic process of melanoma.

Harbst K, Lauss M, Cirenajwis H, Winter C, Howlin J, Törngren T, Kvist A, Nodin B, Olsson E, Häkkinen J, Jirström K, Staaf J, Lundgren L, Olsson H, Ingvar C, Gruvberger-Saal SK, Saal LH, Jönsson G.

J Pathol. 2014 May;233(1):39-50. doi: 10.1002/path.4318. Epub 2014 Jan 27.

25.

Outcomes of medical and surgical treatment for lower urinary tract symptoms (benign prostatic obstruction)--a population-based cohort study.

Pöyhönen A, Auvinen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL.

Int J Clin Pract. 2014 Mar;68(3):349-55. doi: 10.1111/ijcp.12318. Epub 2013 Dec 22.

PMID:
24372641
26.

Concurrent explanations can enhance visual decision making.

Leisti T, Radun J, Virtanen T, Nyman G, Häkkinen J.

Acta Psychol (Amst). 2014 Jan;145:65-74. doi: 10.1016/j.actpsy.2013.11.001. Epub 2013 Dec 1.

PMID:
24301018
27.

Natural course of lower urinary tract symptoms in men not requiring treatment--a 5-year longitudinal population-based study.

Pöyhönen A, Häkkinen JT, Koskimäki J, Tammela TL, Auvinen A.

Urology. 2014 Feb;83(2):411-5. doi: 10.1016/j.urology.2013.10.003. Epub 2013 Nov 15.

PMID:
24246327
28.

Visual task performance using a monocular see-through head-mounted display (HMD) while walking.

Mustonen T, Berg M, Kaistinen J, Kawai T, Häkkinen J.

J Exp Psychol Appl. 2013 Dec;19(4):333-44. doi: 10.1037/a0034635. Epub 2013 Nov 4.

PMID:
24188332
29.

Empirical evaluation of grouping of lower urinary tract symptoms: principal component analysis of Tampere Ageing Male Urological Study data.

Pöyhönen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL, Auvinen A.

BJU Int. 2013 Mar;111(3):467-73. doi: 10.1111/j.1464-410X.2012.11593.x. Epub 2012 Oct 26.

30.

Prevalence and bother of postmicturition dribble in Finnish men aged 30-80 years: Tampere Ageing Male Urologic Study (TAMUS).

Pöyhönen A, Auvinen A, Koskimäki J, Hakama M, Tammela TL, Häkkinen JT.

Scand J Urol Nephrol. 2012 Dec;46(6):418-23. doi: 10.3109/00365599.2012.702786. Epub 2012 Jul 27.

PMID:
22835055
31.

Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry.

Végvári Á, Rezeli M, Sihlbom C, Häkkinen J, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.

Clin Biochem. 2012 Mar;45(4-5):331-8. doi: 10.1016/j.clinbiochem.2011.11.018. Epub 2011 Dec 16.

32.

Prevalence of hesitancy in 30-80-year-old Finnish men: Tampere Ageing Male Urological Study (TAMUS).

Pöyhönen A, Häkkinen JT, Koskimäki J, Hakama M, Tammela TL, Auvinen A.

BJU Int. 2012 May;109(9):1360-4. doi: 10.1111/j.1464-410X.2011.10443.x. Epub 2011 Aug 24.

33.

Bioinformatic strategies for unambiguous identification of prostate specific antigen in clinical samples.

Végvári A, Rezeli M, Häkkinen J, Sihlbom C, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.

J Proteomics. 2011 Dec 10;75(1):202-10. doi: 10.1016/j.jprot.2011.06.008. Epub 2011 Jun 23.

34.

GOBO: gene expression-based outcome for breast cancer online.

Ringnér M, Fredlund E, Häkkinen J, Borg Å, Staaf J.

PLoS One. 2011 Mar 21;6(3):e17911. doi: 10.1371/journal.pone.0017911.

35.

Laboratory data and sample management for proteomics.

Häkkinen J, Levander F.

Methods Mol Biol. 2011;696:79-92. doi: 10.1007/978-1-60761-987-1_5.

PMID:
21063942
36.

BASE--2nd generation software for microarray data management and analysis.

Vallon-Christersson J, Nordborg N, Svensson M, Häkkinen J.

BMC Bioinformatics. 2009 Oct 12;10:330. doi: 10.1186/1471-2105-10-330.

37.

Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.

Eisenacher M, Martens L, Barsnes H, Hardt T, Kohl M, Häkkinen J, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2009 Jul;9(14):3626-9. doi: 10.1002/pmic.200900205.

PMID:
19639582
38.

Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).

Eisenacher M, Martens L, Hardt T, Kohl M, Barsnes H, Helsens K, Häkkinen J, Levander F, Aebersold R, Vandekerckhove J, Dunn MJ, Lisacek F, Siepen JA, Hubbard SJ, Binz PA, Blüggel M, Thiele H, Cottrell J, Meyer HE, Apweiler R, Stephan C.

Proteomics. 2009 Aug;9(15):3928-33. doi: 10.1002/pmic.200900247.

PMID:
19637238
39.

More study needed on morning erections and erectile dysfunction.

Koskimäki J, Shiri R, Tammela T, Häkkinen J, Hakama M, Auvinen A.

Am J Med. 2009 Jul;122(7):e7-8. doi: 10.1016/j.amjmed.2009.02.001. No abstract available.

PMID:
19559154
40.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

J Proteome Res. 2009 Jun;8(6):3037-43. doi: 10.1021/pr900189c.

PMID:
19354269
41.

Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands.

Eisenacher M, Kohl M, Martens L, Barsnes H, Hardt T, Levander F, Häkkinen J, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2009 Jan;9(2):218-22. doi: 10.1002/pmic.200800732.

PMID:
19105180
42.

Proteomics Data Collection - 3rd ProDaC workshop April 22nd 2008, Toledo, Spain.

Eisenacher M, Hardt T, Martens L, Häkkinen J, Apweiler R, Hamacher M, Meyer HE, Stephan C.

Proteomics. 2008 Oct;8(20):4163-7. doi: 10.1002/pmic.200800515.

PMID:
18814333
43.

The effects of lifestyle factors on the incidence of nocturia.

Shiri R, Hakama M, Häkkinen J, Auvinen A, Huhtala H, Tammela TL, Koskimäki J.

J Urol. 2008 Nov;180(5):2059-62. doi: 10.1016/j.juro.2008.07.042. Epub 2008 Sep 18.

PMID:
18804241
44.

Regular intercourse protects against erectile dysfunction: Tampere Aging Male Urologic Study.

Koskimäki J, Shiri R, Tammela T, Häkkinen J, Hakama M, Auvinen A.

Am J Med. 2008 Jul;121(7):592-6. doi: 10.1016/j.amjmed.2008.02.042. Epub 2008 Jun 4.

PMID:
18538297
45.

Depressive symptoms increase the incidence of nocturia: Tampere Aging Male Urologic Study (TAMUS).

Häkkinen JT, Shiri R, Koskimäki J, Tammela TL, Auvinen A, Hakama M.

J Urol. 2008 May;179(5):1897-901. doi: 10.1016/j.juro.2008.01.037. Epub 2008 Mar 18.

PMID:
18353384
46.

Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea.

Eisenacher M, Hardt T, Hamacher M, Martens L, Häkkinen J, Levander F, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2008 Apr;8(7):1326-30. doi: 10.1002/pmic.200701098.

PMID:
18318011
47.

Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.

Eisenacher M, Hardt T, Hamacher M, Martens L, Häkkinen J, Levander F, Apweiler R, Meyer HE, Stephan C.

Proteomics. 2007 Sep;7(17):3034-7.

PMID:
17683037
48.

Proteomic variation is as large within as between strawberry varieties.

Alm R, Ekefjärd A, Krogh M, Häkkinen J, Emanuelsson C.

J Proteome Res. 2007 Aug;6(8):3011-20. Epub 2007 Jul 4.

PMID:
17608511
49.

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry.

Potthast F, Gerrits B, Häkkinen J, Rutishauser D, Ahrens CH, Roschitzki B, Baerenfaller K, Munton RP, Walther P, Gehrig P, Seif P, Seeberger PH, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jul 1;854(1-2):173-82. Epub 2007 Apr 25.

PMID:
17513179
50.

Automated reporting from gel-based proteomics experiments using the open source Proteios database application.

Levander F, Krogh M, Wårell K, Gärdén P, James P, Häkkinen J.

Proteomics. 2007 Mar;7(5):668-74.

PMID:
17295359

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