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Items: 1 to 50 of 97

1.

Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

Guyeux C, Charr JC, Tran HTM, Furtado A, Henry RJ, Crouzillat D, Guyot R, Hamon P.

PLoS One. 2019 Jun 12;14(6):e0216347. doi: 10.1371/journal.pone.0216347. eCollection 2019.

2.

Evidence for hormonal control of heart regenerative capacity during endothermy acquisition.

Hirose K, Payumo AY, Cutie S, Hoang A, Zhang H, Guyot R, Lunn D, Bigley RB, Yu H, Wang J, Smith M, Gillett E, Muroy SE, Schmid T, Wilson E, Field KA, Reeder DM, Maden M, Yartsev MM, Wolfgang MJ, Grützner F, Scanlan TS, Szweda LI, Buffenstein R, Hu G, Flamant F, Olgin JE, Huang GN.

Science. 2019 Apr 12;364(6436):184-188. doi: 10.1126/science.aar2038. Epub 2019 Mar 7.

PMID:
30846611
3.

An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses.

Dos Santos TB, Soares JDM, Lima JE, Silva JC, Ivamoto ST, Baba VY, Souza SGH, Lorenzetti APR, Paschoal AR, Meda AR, Nishiyama Júnior MY, de Oliveira ÚC, Mokochinski JB, Guyot R, Junqueira-de-Azevedo ILM, Figueira AVO, Mazzafera P, Júnior OR, Vieira LGE, Pereira LFP, Domingues DS.

Funct Integr Genomics. 2019 Jan;19(1):151-169. doi: 10.1007/s10142-018-0634-8. Epub 2018 Sep 8.

PMID:
30196429
4.

Two Protocols to Study the Interactions of Thyroid Hormone Receptors with Other Proteins and Chromatin.

Guan W, Guyot R, Flamant F.

Methods Mol Biol. 2018;1801:9-16. doi: 10.1007/978-1-4939-7902-8_2. Review.

PMID:
29892812
5.

Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics.

Orozco-Arias S, Liu J, Tabares-Soto R, Ceballos D, Silva Domingues D, Garavito A, Ming R, Guyot R.

Biology (Basel). 2018 May 25;7(2). pii: E32. doi: 10.3390/biology7020032.

6.

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions.

de Castro Nunes R, Orozco-Arias S, Crouzillat D, Mueller LA, Strickler SR, Descombes P, Fournier C, Moine D, de Kochko A, Yuyama PM, Vanzela ALL, Guyot R.

Front Plant Sci. 2018 Feb 15;9:175. doi: 10.3389/fpls.2018.00175. eCollection 2018.

7.

Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.

Sant'Ana GC, Pereira LFP, Pot D, Ivamoto ST, Domingues DS, Ferreira RV, Pagiatto NF, da Silva BSR, Nogueira LM, Kitzberger CSG, Scholz MBS, de Oliveira FF, Sera GH, Padilha L, Labouisse JP, Guyot R, Charmetant P, Leroy T.

Sci Rep. 2018 Jan 11;8(1):465. doi: 10.1038/s41598-017-18800-1.

8.

CRISPR/Cas9 Editing of the Mouse Thra Gene Produces Models with Variable Resistance to Thyroid Hormone.

Markossian S, Guyot R, Richard S, Teixeira M, Aguilera N, Bouchet M, Plateroti M, Guan W, Gauthier K, Aubert D, Flamant F.

Thyroid. 2018 Jan;28(1):139-150. doi: 10.1089/thy.2017.0389. Epub 2018 Jan 2.

PMID:
29205102
9.

Methylcytosine dioxygenase TET3 interacts with thyroid hormone nuclear receptors and stabilizes their association to chromatin.

Guan W, Guyot R, Samarut J, Flamant F, Wong J, Gauthier KC.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8229-8234. doi: 10.1073/pnas.1702192114. Epub 2017 Jul 17.

10.

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis.

Qin G, Xu C, Ming R, Tang H, Guyot R, Kramer EM, Hu Y, Yi X, Qi Y, Xu X, Gao Z, Pan H, Jian J, Tian Y, Yue Z, Xu Y.

Plant J. 2017 Sep;91(6):1108-1128. doi: 10.1111/tpj.13625. Epub 2017 Aug 3.

11.

Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons.

Dupeyron M, de Souza RF, Hamon P, de Kochko A, Crouzillat D, Couturon E, Domingues DS, Guyot R.

Mol Genet Genomics. 2017 Aug;292(4):741-754. doi: 10.1007/s00438-017-1308-2. Epub 2017 Mar 17.

PMID:
28314936
12.

Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.

Hamon P, Grover CE, Davis AP, Rakotomalala JJ, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R.

Mol Phylogenet Evol. 2017 Apr;109:351-361. doi: 10.1016/j.ympev.2017.02.009. Epub 2017 Feb 16.

PMID:
28212875
13.

[Management of intraparenchymal pseudoaneurysm after blunt renal trauma: Results from a series of 325 patients].

Guyot R, Arnoux V, Descotes JL, Terrier N, Boillot B, Thuillier C, Rambeaud JJ, Long JA, Fiard G.

Prog Urol. 2017 Mar;27(3):190-199. doi: 10.1016/j.purol.2016.12.012. Epub 2017 Feb 8. French.

PMID:
28189485
14.
15.

Pineapple Genome: A Reference for Monocots and CAM Photosynthesis.

Ming R, Wai CM, Guyot R.

Trends Genet. 2016 Nov;32(11):690-696. doi: 10.1016/j.tig.2016.08.008. Epub 2016 Sep 6. Review.

PMID:
27613080
16.

Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae).

Rocha DM, Marques A, Andrade CG, Guyot R, Chaluvadi SR, Pedrosa-Harand A, Houben A, Bennetzen JL, Vanzela AL.

J Exp Bot. 2016 Oct;67(18):5391-5401. Epub 2016 Aug 4.

17.

Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Guyot R, Darré T, Dupeyron M, de Kochko A, Hamon S, Couturon E, Crouzillat D, Rigoreau M, Rakotomalala JJ, Raharimalala NE, Akaffou SD, Hamon P.

Mol Genet Genomics. 2016 Oct;291(5):1979-90. doi: 10.1007/s00438-016-1235-7. Epub 2016 Jul 28.

PMID:
27469896
18.

The pineapple genome and the evolution of CAM photosynthesis.

Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q.

Nat Genet. 2015 Dec;47(12):1435-42. doi: 10.1038/ng.3435. Epub 2015 Nov 2.

19.

Genome-wide analysis of LTR-retrotransposons in oil palm.

Beulé T, Agbessi MD, Dussert S, Jaligot E, Guyot R.

BMC Genomics. 2015 Oct 15;16:795. doi: 10.1186/s12864-015-2023-1.

20.

Prise en charge des pseudo-anévrismes rénaux post-traumatiques.

Guyot R, Arnoux V, Fiard G, Terrier N, Thuillier C, Skowron O, Rambeaud J, Descotes J, Long J.

Prog Urol. 2014 Nov;24(13):826-7. doi: 10.1016/j.purol.2014.08.098. Epub 2014 Oct 30. French. No abstract available.

PMID:
26461623
21.

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses.

Santos FC, Guyot R, do Valle CB, Chiari L, Techio VH, Heslop-Harrison P, Vanzela AL.

Chromosome Res. 2015 Sep;23(3):571-82. doi: 10.1007/s10577-015-9492-6.

PMID:
26386563
22.

Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families.

Dias ES, Hatt C, Hamon S, Hamon P, Rigoreau M, Crouzillat D, Carareto CM, de Kochko A, Guyot R.

Plant Mol Biol. 2015 Sep;89(1-2):83-97. doi: 10.1007/s11103-015-0352-8. Epub 2015 Aug 6.

PMID:
26245353
23.

Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species.

Roncal J, Guyot R, Hamon P, Crouzillat D, Rigoreau M, Konan ON, Rakotomalala JJ, Nowak MD, Davis AP, de Kochko A.

Mol Genet Genomics. 2016 Feb;291(1):155-68. doi: 10.1007/s00438-015-1098-3. Epub 2015 Aug 1.

PMID:
26231981
24.

A Novel Mutation in THRA Gene Associated With an Atypical Phenotype of Resistance to Thyroid Hormone.

Espiard S, Savagner F, Flamant F, Vlaeminck-Guillem V, Guyot R, Munier M, d'Herbomez M, Bourguet W, Pinto G, Rose C, Rodien P, Wémeau JL.

J Clin Endocrinol Metab. 2015 Aug;100(8):2841-8. doi: 10.1210/jc.2015-1120. Epub 2015 Jun 2.

PMID:
26037512
25.

Origin and domestication of papaya Yh chromosome.

VanBuren R, Zeng F, Chen C, Zhang J, Wai CM, Han J, Aryal R, Gschwend AR, Wang J, Na JK, Huang L, Zhang L, Miao W, Gou J, Arro J, Guyot R, Moore RC, Wang ML, Zee F, Charlesworth D, Moore PH, Yu Q, Ming R.

Genome Res. 2015 Apr;25(4):524-33. doi: 10.1101/gr.183905.114. Epub 2015 Mar 11.

26.

Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements.

Chaparro C, Gayraud T, de Souza RF, Domingues DS, Akaffou S, Laforga Vanzela AL, Kochko Ad, Rigoreau M, Crouzillat D, Hamon S, Hamon P, Guyot R.

Genome Biol Evol. 2015 Jan 7;7(2):493-504. doi: 10.1093/gbe/evv001.

27.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

28.

Toxicogenomic analysis of the ability of brominated flame retardants TBBPA and BDE-209 to disrupt thyroid hormone signaling in neural cells.

Guyot R, Chatonnet F, Gillet B, Hughes S, Flamant F.

Toxicology. 2014 Nov 5;325:125-32. doi: 10.1016/j.tox.2014.08.007. Epub 2014 Aug 27.

PMID:
25172293
29.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, Lashermes P.

Plant Mol Biol. 2013 Oct;83(3):177-89. doi: 10.1007/s11103-013-0077-5. Epub 2013 May 25.

PMID:
23708951
30.

Genome-wide analysis of thyroid hormone receptors shared and specific functions in neural cells.

Chatonnet F, Guyot R, Benoît G, Flamant F.

Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):E766-75. doi: 10.1073/pnas.1210626110. Epub 2013 Feb 4.

31.

Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites.

Razafinarivo NJ, Guyot R, Davis AP, Couturon E, Hamon S, Crouzillat D, Rigoreau M, Dubreuil-Tranchant C, Poncet V, De Kochko A, Rakotomalala JJ, Hamon P.

Ann Bot. 2013 Feb;111(2):229-48. doi: 10.1093/aob/mcs283. Epub 2012 Dec 28.

32.

Genome-wide search reveals the existence of a limited number of thyroid hormone receptor alpha target genes in cerebellar neurons.

Chatonnet F, Guyot R, Picou F, Bondesson M, Flamant F.

PLoS One. 2012;7(5):e30703. doi: 10.1371/journal.pone.0030703. Epub 2012 May 7.

33.

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.

BMC Genomics. 2012 Mar 20;13:103. doi: 10.1186/1471-2164-13-103.

34.

Site-Specific Insertion Polymorphism of the MITE Alex-1 in the Genus Coffea Suggests Interspecific Gene Flow.

Dubreuil-Tranchant C, Guyot R, Guellim A, Duret C, de la Mare M, Razafinarivo N, Poncet V, Hamon S, Hamon P, de Kochko A.

Int J Evol Biol. 2011;2011:358412. doi: 10.4061/2011/358412. Epub 2011 Sep 27.

35.

[Thyroid hormone and cerebellum development: direct and indirect effects?].

Chatonnet F, Fauquier T, Picou F, Guyot R, Flamant F.

Ann Endocrinol (Paris). 2011 Apr;72(2):99-102. doi: 10.1016/j.ando.2011.03.012. Epub 2011 Apr 20. Review. French.

PMID:
21511240
36.

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

Hamon P, Duroy PO, Dubreuil-Tranchant C, Mafra D'Almeida Costa P, Duret C, Razafinarivo NJ, Couturon E, Hamon S, de Kochko A, Poncet V, Guyot R.

Mol Genet Genomics. 2011 Jun;285(6):447-60. doi: 10.1007/s00438-011-0617-0. Epub 2011 Apr 20.

PMID:
21505885
37.

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea).

Yu Q, Guyot R, de Kochko A, Byers A, Navajas-Pérez R, Langston BJ, Dubreuil-Tranchant C, Paterson AH, Poncet V, Nagai C, Ming R.

Plant J. 2011 Jul;67(2):305-17. doi: 10.1111/j.1365-313X.2011.04590.x. Epub 2011 May 12.

38.

Patterns of sequence divergence and evolution of the S orthologous regions between Asian and African cultivated rice species.

Guyot R, Garavito A, Gavory F, Samain S, Tohme J, Ghesquière A, Lorieux M.

PLoS One. 2011 Mar 10;6(3):e17726. doi: 10.1371/journal.pone.0017726.

39.

Life and death among plant lysophosphatidic acid acyltransferases.

Maisonneuve S, Guyot R, Roscoe T.

Plant Signal Behav. 2010 Jul;5(7):913-5. doi: 10.4161/psb.5.7.12101. Epub 2010 Jul 1.

40.

In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1.

Soto-Suárez M, Bernal D, González C, Szurek B, Guyot R, Tohme J, Verdier V.

BMC Microbiol. 2010 Jun 11;10:170. doi: 10.1186/1471-2180-10-170.

41.

A genetic model for the female sterility barrier between Asian and African cultivated rice species.

Garavito A, Guyot R, Lozano J, Gavory F, Samain S, Panaud O, Tohme J, Ghesquière A, Lorieux M.

Genetics. 2010 Aug;185(4):1425-40. doi: 10.1534/genetics.110.116772. Epub 2010 May 10.

42.

The transforming acidic coiled coil (TACC1) protein modulates the transcriptional activity of the nuclear receptors TR and RAR.

Guyot R, Vincent S, Bertin J, Samarut J, Ravel-Chapuis P.

BMC Mol Biol. 2010 Jan 15;11:3. doi: 10.1186/1471-2199-11-3.

43.

Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Guyot R, de la Mare M, Viader V, Hamon P, Coriton O, Bustamante-Porras J, Poncet V, Campa C, Hamon S, de Kochko A.

BMC Plant Biol. 2009 Feb 25;9:22. doi: 10.1186/1471-2229-9-22.

44.

Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice.

Bourgis F, Guyot R, Gherbi H, Tailliez E, Amabile I, Salse J, Lorieux M, Delseny M, Ghesquière A.

Theor Appl Genet. 2008 Aug;117(3):353-68. doi: 10.1007/s00122-008-0780-9. Epub 2008 May 20.

45.

A combined approach identifies a limited number of new thyroid hormone target genes in post-natal mouse cerebellum.

Quignodon L, Grijota-Martinez C, Compe E, Guyot R, Allioli N, Laperrière D, Walker R, Meltzer P, Mader S, Samarut J, Flamant F.

J Mol Endocrinol. 2007 Jul;39(1):17-28.

PMID:
17601882
46.

RetrOryza: a database of the rice LTR-retrotransposons.

Chaparro C, Guyot R, Zuccolo A, Piégu B, Panaud O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D66-70. Epub 2006 Oct 28.

47.

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.

Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O.

Genome Res. 2006 Oct;16(10):1262-9. Epub 2006 Sep 8. Erratum in: Genome Res. 2011 Jul;21(7):1201. Saniyal, Abhijit [corrected to Sanyal, Abhijit].

48.

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations.

Sabot F, Guyot R, Wicker T, Chantret N, Laubin B, Chalhoub B, Leroy P, Sourdille P, Bernard M.

Mol Genet Genomics. 2005 Sep;274(2):119-30. Epub 2005 Oct 11.

PMID:
16034625
49.

Complex organization and evolution of the tomato pericentromeric region at the FER gene locus.

Guyot R, Cheng X, Su Y, Cheng Z, Schlagenhauf E, Keller B, Ling HQ.

Plant Physiol. 2005 Jul;138(3):1205-15.

50.

Basal membrane remodeling during follicle histogenesis in the rat ovary: contribution of proteinases of the MMP and PA families.

Mazaud S, Guyot R, Guigon CJ, Coudouel N, Le Magueresse-Battistoni B, Magre S.

Dev Biol. 2005 Jan 15;277(2):403-16.

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