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Items: 1 to 50 of 81

1.

Research applications of primary biodiversity databases in the digital age.

Ball-Damerow JE, Brenskelle L, Barve N, Soltis PS, Sierwald P, Bieler R, LaFrance R, Ariño AH, Guralnick RP.

PLoS One. 2019 Sep 11;14(9):e0215794. doi: 10.1371/journal.pone.0215794. eCollection 2019.

2.

Ancient DNA from a 2,500-year-old Caribbean fossil places an extinct bird (Caracara creightoni) in a phylogenetic context.

Oswald JA, Allen JM, Witt KE, Folk RA, Albury NA, Steadman DW, Guralnick RP.

Mol Phylogenet Evol. 2019 Nov;140:106576. doi: 10.1016/j.ympev.2019.106576. Epub 2019 Aug 2.

PMID:
31381968
3.

Tracking trends in monarch abundance over the 20th century is currently impossible using museum records.

Ries L, Zipkin EF, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13745-13748. doi: 10.1073/pnas.1904807116. No abstract available.

PMID:
31291704
4.

The next chapter of human-plague science.

McLean BS, Cook JA, Durden LA, Hoberg EP, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14411-14412. doi: 10.1073/pnas.1908836116. Epub 2019 Jun 28. No abstract available.

PMID:
31253701
5.

For common community phylogenetic analyses, go ahead and use synthesis phylogenies.

Li D, Trotta L, Marx HE, Allen JM, Sun M, Soltis DE, Soltis PS, Guralnick RP, Baiser B.

Ecology. 2019 Sep;100(9):e02788. doi: 10.1002/ecy.2788. Epub 2019 Jul 9.

PMID:
31225900
6.

Rates of niche and phenotype evolution lag behind diversification in a temperate radiation.

Folk RA, Stubbs RL, Mort ME, Cellinese N, Allen JM, Soltis PS, Soltis DE, Guralnick RP.

Proc Natl Acad Sci U S A. 2019 May 28;116(22):10874-10882. doi: 10.1073/pnas.1817999116. Epub 2019 May 13.

7.

ZooArchNet: Connecting zooarchaeological specimens to the biodiversity and archaeology data networks.

LeFebvre MJ, Brenskelle L, Wieczorek J, Kansa SW, Kansa EC, Wallis NJ, King JN, Emery KF, Guralnick R.

PLoS One. 2019 Apr 12;14(4):e0215369. doi: 10.1371/journal.pone.0215369. eCollection 2019.

8.

Integrating herbarium specimen observations into global phenology data systems.

Brenskelle L, Stucky BJ, Deck J, Walls R, Guralnick RP.

Appl Plant Sci. 2019 Mar 7;7(3):e01231. doi: 10.1002/aps3.1231. eCollection 2019 Mar.

9.

Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.

Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, Vaidya G, Walls R, Yoder M, Zhang G, Guralnick R.

Biodivers Data J. 2019 Mar 13;7:e33303. doi: 10.3897/BDJ.7.e33303. eCollection 2019.

10.

Using Semistructured Surveys to Improve Citizen Science Data for Monitoring Biodiversity.

Kelling S, Johnston A, Bonn A, Fink D, Ruiz-Gutierrez V, Bonney R, Fernandez M, Hochachka WM, Julliard R, Kraemer R, Guralnick R.

Bioscience. 2019 Mar 1;69(3):170-179. doi: 10.1093/biosci/biz010. Epub 2019 Mar 18.

11.

Connecting data and expertise: a new alliance for biodiversity knowledge.

Hobern D, Baptiste B, Copas K, Guralnick R, Hahn A, van Huis E, Kim ES, McGeoch M, Naicker I, Navarro L, Noesgaard D, Price M, Rodrigues A, Schigel D, Sheffield CA, Wieczorek J.

Biodivers Data J. 2019 Mar 8;7:e33679. doi: 10.3897/BDJ.7.e33679. eCollection 2019.

12.

Essential biodiversity variables for mapping and monitoring species populations.

Jetz W, McGeoch MA, Guralnick R, Ferrier S, Beck J, Costello MJ, Fernandez M, Geller GN, Keil P, Merow C, Meyer C, Muller-Karger FE, Pereira HM, Regan EC, Schmeller DS, Turak E.

Nat Ecol Evol. 2019 Apr;3(4):539-551. doi: 10.1038/s41559-019-0826-1. Epub 2019 Mar 11.

PMID:
30858594
13.

Biodiversity synthesis across the green branches of the tree of life.

Allen JM, Folk RA, Soltis PS, Soltis DE, Guralnick RP.

Nat Plants. 2019 Jan;5(1):11-13. doi: 10.1038/s41477-018-0322-7. Epub 2018 Dec 31.

PMID:
30598535
14.

Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates.

Allen JM, Germain-Aubrey CC, Barve N, Neubig KM, Majure LC, Laffan SW, Mishler BD, Owens HL, Smith SA, Whitten WM, Abbott JR, Soltis DE, Guralnick R, Soltis PS.

iScience. 2019 Jan 25;11:57-70. doi: 10.1016/j.isci.2018.12.002. Epub 2018 Dec 8.

15.

Using insect natural history collections to study global change impacts: challenges and opportunities.

Kharouba HM, Lewthwaite JMM, Guralnick R, Kerr JT, Vellend M.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763). pii: 20170405. doi: 10.1098/rstb.2017.0405. Review.

PMID:
30455219
16.

Towards global data products of Essential Biodiversity Variables on species traits.

Kissling WD, Walls R, Bowser A, Jones MO, Kattge J, Agosti D, Amengual J, Basset A, van Bodegom PM, Cornelissen JHC, Denny EG, Deudero S, Egloff W, Elmendorf SC, Alonso García E, Jones KD, Jones OR, Lavorel S, Lear D, Navarro LM, Pawar S, Pirzl R, Rüger N, Sal S, Salguero-Gómez R, Schigel D, Schulz KS, Skidmore A, Guralnick RP.

Nat Ecol Evol. 2018 Oct;2(10):1531-1540. doi: 10.1038/s41559-018-0667-3. Epub 2018 Sep 17. Review.

17.

Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms.

Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP.

Am Nat. 2018 Aug;192(2):171-187. doi: 10.1086/698120. Epub 2018 Jun 20.

PMID:
30016161
18.

aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data.

Allen JM, LaFrance R, Folk RA, Johnson KP, Guralnick RP.

Evol Bioinform Online. 2018 May 8;14:1176934318774546. doi: 10.1177/1176934318774546. eCollection 2018. Review.

19.

The Plant Phenology Ontology: A New Informatics Resource for Large-Scale Integration of Plant Phenology Data.

Stucky BJ, Guralnick R, Deck J, Denny EG, Bolmgren K, Walls R.

Front Plant Sci. 2018 May 1;9:517. doi: 10.3389/fpls.2018.00517. eCollection 2018.

20.

Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants.

Yost JM, Sweeney PW, Gilbert E, Nelson G, Guralnick R, Gallinat AS, Ellwood ER, Rossington N, Willis CG, Blum SD, Walls RL, Haston EM, Denslow MW, Zohner CM, Morris AB, Stucky BJ, Carter JR, Baxter DG, Bolmgren K, Denny EG, Dean E, Pearson KD, Davis CC, Mishler BD, Soltis PS, Mazer SJ.

Appl Plant Sci. 2018 Feb 28;6(2):e1022. doi: 10.1002/aps3.1022. eCollection 2018 Feb.

21.

New prospects in the detection and comparative analysis of hybridization in the tree of life.

Folk RA, Soltis PS, Soltis DE, Guralnick R.

Am J Bot. 2018 Mar;105(3):364-375. doi: 10.1002/ajb2.1018. Epub 2018 Feb 14.

22.

The tempo and mode of the taxonomic correction process: How taxonomists have corrected and recorrected North American bird species over the last 127 years.

Vaidya G, Lepage D, Guralnick R.

PLoS One. 2018 Apr 19;13(4):e0195736. doi: 10.1371/journal.pone.0195736. eCollection 2018.

23.

Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids.

Folk RA, Sun M, Soltis PS, Smith SA, Soltis DE, Guralnick RP.

Am J Bot. 2018 Mar;105(3):433-445. doi: 10.1002/ajb2.1059. Epub 2018 Apr 17.

24.

Worldwide Engagement for Digitizing Biocollections (WeDigBio): The Biocollections Community's Citizen-Science Space on the Calendar.

Ellwood ER, Kimberly P, Guralnick R, Flemons P, Love K, Ellis S, Allen JM, Best JH, Carter R, Chagnoux S, Costello R, Denslow MW, Dunckel BA, Ferriter MM, Gilbert EE, Goforth C, Groom Q, Krimmel ER, LaFrance R, Martinec JL, Miller AN, Minnaert-Grote J, Nash T, Oboyski P, Paul DL, Pearson KD, Pentcheff ND, Roberts MA, Seltzer CE, Soltis PS, Stephens R, Sweeney PW, von Konrat M, Wall A, Wetzer R, Zimmerman C, Mast AR.

Bioscience. 2018 Feb 1;68(2):112-124. doi: 10.1093/biosci/bix143. Epub 2018 Jan 17.

25.

Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems.

Muller-Karger FE, Hestir E, Ade C, Turpie K, Roberts DA, Siegel D, Miller RJ, Humm D, Izenberg N, Keller M, Morgan F, Frouin R, Dekker AG, Gardner R, Goodman J, Schaeffer B, Franz BA, Pahlevan N, Mannino AG, Concha JA, Ackleson SG, Cavanaugh KC, Romanou A, Tzortziou M, Boss ES, Pavlick R, Freeman A, Rousseaux CS, Dunne J, Long MC, Klein E, McKinley GA, Goes J, Letelier R, Kavanaugh M, Roffer M, Bracher A, Arrigo KR, Dierssen H, Zhang X, Davis FW, Best B, Guralnick R, Moisan J, Sosik HM, Kudela R, Mouw CB, Barnard AH, Palacios S, Roesler C, Drakou EG, Appeltans W, Jetz W.

Ecol Appl. 2018 Apr;28(3):749-760. doi: 10.1002/eap.1682. Epub 2018 Mar 6.

26.

A Comprehensive and Dated Phylogenomic Analysis of Butterflies.

Espeland M, Breinholt J, Willmott KR, Warren AD, Vila R, Toussaint EFA, Maunsell SC, Aduse-Poku K, Talavera G, Eastwood R, Jarzyna MA, Guralnick R, Lohman DJ, Pierce NE, Kawahara AY.

Curr Biol. 2018 Mar 5;28(5):770-778.e5. doi: 10.1016/j.cub.2018.01.061. Epub 2018 Feb 15.

27.

No general relationship between mass and temperature in endothermic species.

Riemer K, Guralnick RP, White EP.

Elife. 2018 Jan 9;7. pii: e27166. doi: 10.7554/eLife.27166.

28.

Chronic anthropogenic noise disrupts glucocorticoid signaling and has multiple effects on fitness in an avian community.

Kleist NJ, Guralnick RP, Cruz A, Lowry CA, Francis CD.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E648-E657. doi: 10.1073/pnas.1709200115. Epub 2018 Jan 8. Erratum in: Proc Natl Acad Sci U S A. 2018 Feb 20;:.

29.

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale.

Kissling WD, Ahumada JA, Bowser A, Fernandez M, Fernández N, García EA, Guralnick RP, Isaac NJB, Kelling S, Los W, McRae L, Mihoub JB, Obst M, Santamaria M, Skidmore AK, Williams KJ, Agosti D, Amariles D, Arvanitidis C, Bastin L, De Leo F, Egloff W, Elith J, Hobern D, Martin D, Pereira HM, Pesole G, Peterseil J, Saarenmaa H, Schigel D, Schmeller DS, Segata N, Turak E, Uhlir PF, Wee B, Hardisty AR.

Biol Rev Camb Philos Soc. 2018 Feb;93(1):600-625. doi: 10.1111/brv.12359. Epub 2017 Aug 2. Review.

PMID:
28766908
30.

Increasing phenological asynchrony between spring green-up and arrival of migratory birds.

Mayor SJ, Guralnick RP, Tingley MW, Otegui J, Withey JC, Elmendorf SC, Andrew ME, Leyk S, Pearse IS, Schneider DC.

Sci Rep. 2017 May 15;7(1):1902. doi: 10.1038/s41598-017-02045-z.

31.

Digest: Imperfect convergence in butterfly wing patterns.

Earl C, Guralnick RP, Kawahara AY.

Evolution. 2017 Apr;71(4):1118-1119. doi: 10.1111/evo.13215. Epub 2017 Mar 17. No abstract available.

PMID:
28240773
32.

Sound settlement: noise surpasses land cover in explaining breeding habitat selection of secondary cavity-nesting birds.

Kleist NJ, Guralnick RP, Cruz A, Francis CD.

Ecol Appl. 2017 Jan;27(1):260-273. doi: 10.1002/eap.1437.

PMID:
28052511
33.

The importance of digitized biocollections as a source of trait data and a new VertNet resource.

Guralnick RP, Zermoglio PF, Wieczorek J, LaFrance R, Bloom D, Russell L.

Database (Oxford). 2016 Dec 26;2016. pii: baw158. doi: 10.1093/database/baw158. Print 2016.

34.

Monitoring plant functional diversity from space.

Jetz W, Cavender-Bares J, Pavlick R, Schimel D, Davis FW, Asner GP, Guralnick R, Kattge J, Latimer AM, Moorcroft P, Schaepman ME, Schildhauer MP, Schneider FD, Schrodt F, Stahl U, Ustin SL.

Nat Plants. 2016 Mar 2;2:16024. doi: 10.1038/nplants.2016.24. No abstract available.

PMID:
27249357
35.

The geospatial data quality REST API for primary biodiversity data.

Otegui J, Guralnick RP.

Bioinformatics. 2016 Jun 1;32(11):1755-7. doi: 10.1093/bioinformatics/btw057. Epub 2016 Feb 1.

36.

A Standardized Reference Data Set for Vertebrate Taxon Name Resolution.

Zermoglio PF, Guralnick RP, Wieczorek JR.

PLoS One. 2016 Jan 13;11(1):e0146894. doi: 10.1371/journal.pone.0146894. eCollection 2016.

37.

Global priorities for an effective information basis of biodiversity distributions.

Meyer C, Kreft H, Guralnick R, Jetz W.

Nat Commun. 2015 Sep 8;6:8221. doi: 10.1038/ncomms9221.

38.

Community next steps for making globally unique identifiers work for biocollections data.

Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD.

Zookeys. 2015 Apr 6;(494):133-54. doi: 10.3897/zookeys.494.9352. eCollection 2015.

39.

The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices.

Guralnick R, Conlin T, Deck J, Stucky BJ, Cellinese N.

PLoS One. 2014 Dec 3;9(12):e114069. doi: 10.1371/journal.pone.0114069. eCollection 2014.

40.

The GBIF integrated publishing toolkit: facilitating the efficient publishing of biodiversity data on the internet.

Robertson T, Döring M, Guralnick R, Bloom D, Wieczorek J, Braak K, Otegui J, Russell L, Desmet P.

PLoS One. 2014 Aug 6;9(8):e102623. doi: 10.1371/journal.pone.0102623. eCollection 2014.

41.

The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web.

Stucky BJ, Deck J, Conlin T, Ziemba L, Cellinese N, Guralnick R.

BMC Bioinformatics. 2014 Jul 29;15:257. doi: 10.1186/1471-2105-15-257.

42.

Avibase - a database system for managing and organizing taxonomic concepts.

Lepage D, Vaidya G, Guralnick R.

Zookeys. 2014 Jun 25;(420):117-35. doi: 10.3897/zookeys.420.7089. eCollection 2014.

43.

Specimen collection: an essential tool.

Rocha LA, Aleixo A, Allen G, Almeda F, Baldwin CC, Barclay MV, Bates JM, Bauer AM, Benzoni F, Berns CM, Berumen ML, Blackburn DC, Blum S, Bolaños F, Bowie RC, Britz R, Brown RM, Cadena CD, Carpenter K, Ceríaco LM, Chakrabarty P, Chaves G, Choat JH, Clements KD, Collette BB, Collins A, Coyne J, Cracraft J, Daniel T, de Carvalho MR, de Queiroz K, Di Dario F, Drewes R, Dumbacher JP, Engilis A Jr, Erdmann MV, Eschmeyer W, Feldman CR, Fisher BL, Fjeldså J, Fritsch PW, Fuchs J, Getahun A, Gill A, Gomon M, Gosliner T, Graves GR, Griswold CE, Guralnick R, Hartel K, Helgen KM, Ho H, Iskandar DT, Iwamoto T, Jaafar Z, James HF, Johnson D, Kavanaugh D, Knowlton N, Lacey E, Larson HK, Last P, Leis JM, Lessios H, Liebherr J, Lowman M, Mahler DL, Mamonekene V, Matsuura K, Mayer GC, Mays H Jr, McCosker J, McDiarmid RW, McGuire J, Miller MJ, Mooi R, Mooi RD, Moritz C, Myers P, Nachman MW, Nussbaum RA, Foighil DÓ, Parenti LR, Parham JF, Paul E, Paulay G, Pérez-Emán J, Pérez-Matus A, Poe S, Pogonoski J, Rabosky DL, Randall JE, Reimer JD, Robertson DR, Rödel MO, Rodrigues MT, Roopnarine P, Rüber L, Ryan MJ, Sheldon F, Shinohara G, Short A, Simison WB, Smith-Vaniz WF, Springer VG, Stiassny M, Tello JG, Thompson CW, Trnski T, Tucker P, Valqui T, Vecchione M, Verheyen E, Wainwright PC, Wheeler TA, White WT, Will K, Williams JT, Williams G, Wilson EO, Winker K, Winterbottom R, Witt CC.

Science. 2014 May 23;344(6186):814-5. doi: 10.1126/science.344.6186.814. No abstract available.

PMID:
24855245
44.

Determinants of pika population density vs. occupancy in the Southern Rocky Mountains.

Erb LP, Ray C, Guralnick R.

Ecol Appl. 2014 Apr;24(3):429-35.

PMID:
24834730
45.

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.

Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, Midford P, Morrison N, Ó Tuama É, Schildhauer M, Smith B, Stucky BJ, Thomer A, Wieczorek J, Whitacre J, Wooley J.

PLoS One. 2014 Mar 3;9(3):e89606. doi: 10.1371/journal.pone.0089606. eCollection 2014.

46.

Integrating multiple lines of evidence into historical biogeography hypothesis testing: a Bison bison case study.

Metcalf JL, Prost S, Nogués-Bravo D, DeChaine EG, Anderson C, Batra P, Araújo MB, Cooper A, Guralnick RP.

Proc Biol Sci. 2014 Jan 8;281(1777):20132782. doi: 10.1098/rspb.2013.2782. Print 2014 Feb 22.

47.

Clarifying concepts and terms in biodiversity informatics.

Deck J, Barker K, Beaman R, Buttigieg PL, Dröge G, Guralnick R, Miller C, Tuama EÓ, Murrell Z, Parr C, Robbins B, Schigel D, Stucky B, Walls R, Wieczorek J, Morrison N, Wooley J.

Stand Genomic Sci. 2013 May 31;8(2):352-9. doi: 10.4056/sigs.3907833. eCollection 2013. No abstract available.

48.

Losing ground: past history and future fate of Arctic small mammals in a changing climate.

Prost S, Guralnick RP, Waltari E, Fedorov VB, Kuzmina E, Smirnov N, van Kolfschoten T, Hofreiter M, Vrieling K.

Glob Chang Biol. 2013 Jun;19(6):1854-64. doi: 10.1111/gcb.12157. Epub 2013 Mar 25.

PMID:
23505210
49.

Effects of late quaternary climate change on Palearctic shrews.

Prost S, Klietmann J, van Kolfschoten T, Guralnick RP, Waltari E, Vrieling K, Stiller M, Nagel D, Rabeder G, Hofreiter M, Sommer RS.

Glob Chang Biol. 2013 Jun;19(6):1865-74. doi: 10.1111/gcb.12153. Epub 2013 Mar 9.

PMID:
23505017
50.

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