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Items: 30

1.

Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus.

Zhang J, Yang Y, Zheng K, Xie M, Feng K, Jawdy SS, Gunter LE, Ranjan P, Singan VR, Engle N, Lindquist E, Barry K, Schmutz J, Zhao N, Tschaplinski TJ, LeBoldus J, Tuskan GA, Chen JG, Muchero W.

New Phytol. 2018 Jul 11. doi: 10.1111/nph.15297. [Epub ahead of print]

PMID:
29992670
2.

A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus.

Xie M, Muchero W, Bryan AC, Yee KL, Guo HB, Zhang J, Tschaplinski T, Singan VR, Lindquist E, Payyavula RS, Barros-Rios J, Dixon RA, Engle N, Sykes RW, Davis M, Jawdy S, Gunter LE, Thompson O, DiFazio SP, Evans LM, Winkler K, Collins C, Schmutz J, Guo H, Kalluri U, Rodriguez M, Feng K, Chen JG, Tuskan GA.

Plant Cell. 2018 Jun 11. pii: tpc.00168.2018. doi: 10.1105/tpc.18.00168. [Epub ahead of print]

3.

Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves.

Abraham PE, Garcia BJ, Gunter LE, Jawdy SS, Engle N, Yang X, Jacobson DA, Hettich RL, Tuskan GA, Tschaplinski TJ.

PLoS One. 2018 Feb 15;13(2):e0190019. doi: 10.1371/journal.pone.0190019. eCollection 2018.

4.

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome.

Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Pelletier DA, Weston DJ.

mSystems. 2018 Jan 23;3(1). pii: e00070-17. doi: 10.1128/mSystems.00070-17. eCollection 2018 Jan-Feb.

5.

Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus.

Yang Y, Yoo CG, Winkeler KA, Collins CM, Hinchee MAW, Jawdy SS, Gunter LE, Engle NL, Pu Y, Yang X, Tschaplinski TJ, Ragauskas AJ, Tuskan GA, Chen JG.

Biotechnol Biofuels. 2017 Dec 27;10:311. doi: 10.1186/s13068-017-0998-3. eCollection 2017.

6.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

PMID:
29237241
7.

Agronomic performance of Populus deltoides trees engineered for biofuel production.

Macaya-Sanz D, Chen JG, Kalluri UC, Muchero W, Tschaplinski TJ, Gunter LE, Simon SJ, Biswal AK, Bryan AC, Payyavula R, Xie M, Yang Y, Zhang J, Mohnen D, Tuskan GA, DiFazio SP.

Biotechnol Biofuels. 2017 Nov 30;10:253. doi: 10.1186/s13068-017-0934-6. eCollection 2017.

8.

Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus.

Yang Y, Yoo CG, Guo HB, Rottmann W, Winkeler KA, Collins CM, Gunter LE, Jawdy SS, Yang X, Guo H, Pu Y, Ragauskas AJ, Tuskan GA, Chen JG.

Biotechnol Biofuels. 2017 Mar 23;10:74. doi: 10.1186/s13068-017-0760-x. eCollection 2017.

9.

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.

Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ.

Front Plant Sci. 2016 Apr 26;7:497. doi: 10.3389/fpls.2016.00497. eCollection 2016.

10.

Scaling nitrogen and carbon interactions: what are the consequences of biological buffering?

Weston DJ, Rogers A, Tschaplinski TJ, Gunter LE, Jawdy SA, Engle NL, Heady LE, Tuskan GA, Wullschleger SD.

Ecol Evol. 2015 Jul;5(14):2839-50. doi: 10.1002/ece3.1565. Epub 2015 Jun 25.

11.

High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.

Muchero W, Guo J, DiFazio SP, Chen JG, Ranjan P, Slavov GT, Gunter LE, Jawdy S, Bryan AC, Sykes R, Ziebell A, Klápště J, Porth I, Skyba O, Unda F, El-Kassaby YA, Douglas CJ, Mansfield SD, Martin J, Schackwitz W, Evans LM, Czarnecki O, Tuskan GA.

BMC Genomics. 2015 Jan 23;16:24. doi: 10.1186/s12864-015-1215-z.

12.

Genome anchored QTLs for biomass productivity in hybrid Populus grown under contrasting environments.

Muchero W, Sewell MM, Ranjan P, Gunter LE, Tschaplinski TJ, Yin T, Tuskan GA.

PLoS One. 2013;8(1):e54468. doi: 10.1371/journal.pone.0054468. Epub 2013 Jan 29.

13.

A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.

Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, Klápště J, Martin J, Schackwitz W, Pennacchio C, Rokhsar D, Friedmann MC, Wasteneys GO, Guy RD, El-Kassaby YA, Mansfield SD, Cronk QC, Ehlting J, Douglas CJ, Tuskan GA.

Mol Ecol Resour. 2013 Mar;13(2):306-23. doi: 10.1111/1755-0998.12056. Epub 2013 Jan 11.

PMID:
23311503
14.

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes.

Karve AA, Jawdy SS, Gunter LE, Allen SM, Yang X, Tuskan GA, Wullschleger SD, Weston DJ.

New Phytol. 2012 Nov;196(3):726-37. doi: 10.1111/j.1469-8137.2012.04288.x. Epub 2012 Sep 3.

15.

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.

Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, Pellegrini M, Mockler TC, Freitag M, Geraldes A, El-Kassaby YA, Mansfield SD, Cronk QC, Douglas CJ, Strauss SH, Rokhsar D, Tuskan GA.

New Phytol. 2012 Nov;196(3):713-25. doi: 10.1111/j.1469-8137.2012.04258.x. Epub 2012 Aug 3.

16.

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar.

Hsu CY, Adams JP, Kim H, No K, Ma C, Strauss SH, Drnevich J, Vandervelde L, Ellis JD, Rice BM, Wickett N, Gunter LE, Tuskan GA, Brunner AM, Page GP, Barakat A, Carlson JE, DePamphilis CW, Luthe DS, Yuceer C.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10756-61. doi: 10.1073/pnas.1104713108. Epub 2011 Jun 8.

17.

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max.

Weston DJ, Karve AA, Gunter LE, Jawdy SS, Yang X, Allen SM, Wullschleger SD.

Plant Cell Environ. 2011 Sep;34(9):1488-506. doi: 10.1111/j.1365-3040.2011.02347.x. Epub 2011 Jun 29.

18.

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA.

Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2.

19.

Cytogenetic analysis of Populus trichocarpa--ribosomal DNA, telomere repeat sequence, and marker-selected BACs.

Islam-Faridi MN, Nelson CD, DiFazio SP, Gunter LE, Tuskan GA.

Cytogenet Genome Res. 2009;125(1):74-80. doi: 10.1159/000218749. Epub 2009 Jul 14.

PMID:
19617699
20.

Microsatellite primer resource for Populus developed from the mapped sequence scaffolds of the Nisqually-1 genome.

Yin TM, Zhang XY, Gunter LE, Li SX, Wullschleger SD, Huang MR, Tuskan GA.

New Phytol. 2009 Jan;181(2):498-503. doi: 10.1111/j.1469-8137.2008.02663.x.

21.

The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.

Yang X, Kalluri UC, Jawdy S, Gunter LE, Yin T, Tschaplinski TJ, Weston DJ, Ranjan P, Tuskan GA.

Plant Physiol. 2008 Nov;148(3):1189-200. doi: 10.1104/pp.108.121921. Epub 2008 Sep 5.

22.

Genome structure and emerging evidence of an incipient sex chromosome in Populus.

Yin T, Difazio SP, Gunter LE, Zhang X, Sewell MM, Woolbright SA, Allan GJ, Kelleher CT, Douglas CJ, Wang M, Tuskan GA.

Genome Res. 2008 Mar;18(3):422-30. doi: 10.1101/gr.7076308. Epub 2008 Feb 6.

23.

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants.

Weston DJ, Gunter LE, Rogers A, Wullschleger SD.

BMC Syst Biol. 2008 Feb 4;2:16. doi: 10.1186/1752-0509-2-16.

24.

Development of AFLP and RAPD markers linked to a locus associated with twisted growth in corkscrew willow (Salix matsudana 'Tortuosa').

Lin J, Gunter LE, Harding SA, Kopp RF, McCord RP, Tsai CJ, Tuskan GA, Smart LB.

Tree Physiol. 2007 Nov;27(11):1575-83.

PMID:
17669747
25.

Large-scale heterospecific segregation distortion in Populus revealed by a dense genetic map.

Yin TM, DiFazio SP, Gunter LE, Riemenschneider D, Tuskan GA.

Theor Appl Genet. 2004 Aug;109(3):451-63. Epub 2004 May 27.

PMID:
15168022
26.

The development of two flanking SCAR markers linked to a sex determination locus in Salix viminalis L.

Gunter LE, Roberts GT, Lee K, Larimer FW, Tuskan GA.

J Hered. 2003 Mar-Apr;94(2):185-9.

PMID:
12721232
27.

Demethylation of satellite I DNA during senescence of bovine adrenocortical cells in culture.

Hornsby PJ, Yang L, Gunter LE.

Mutat Res. 1992 Jan;275(1):13-9.

PMID:
1372683
28.
29.
30.

Carbohydrate involvement in sperm-egg fusion in mice.

Boldt J, Howe AM, Parkerson JB, Gunter LE, Kuehn E.

Biol Reprod. 1989 Apr;40(4):887-96.

PMID:
2752078

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