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Items: 1 to 50 of 157

1.

Syntrophus aciditrophicus uses the same enzymes in a reversible manner to degrade and synthesize aromatic and alicyclic acids.

James KL, Kung JW, Crable BR, Mouttaki H, Sieber JR, Nguyen HH, Yang Y, Xie Y, Erde J, Wofford NQ, Karr EA, Loo JA, Ogorzalek Loo RR, Gunsalus RP, McInerney MJ.

Environ Microbiol. 2019 May;21(5):1833-1846. doi: 10.1111/1462-2920.14601.

PMID:
30895699
2.

Genome Sequence of Acetomicrobium hydrogeniformans OS1.

Cook LE, Gang SS, Ihlan A, Maune M, Tanner RS, McInerney MJ, Weinstock G, Lobos EA, Gunsalus RP.

Genome Announc. 2018 Jun 28;6(26). pii: e00581-18. doi: 10.1128/genomeA.00581-18.

3.

Morphology of the archaellar motor and associated cytoplasmic cone in Thermococcus kodakaraensis.

Briegel A, Oikonomou CM, Chang YW, Kjær A, Huang AN, Kim KW, Ghosal D, Nguyen HH, Kenny D, Ogorzalek Loo RR, Gunsalus RP, Jensen GJ.

EMBO Rep. 2017 Sep;18(9):1660-1670. doi: 10.15252/embr.201744070. Epub 2017 Jul 19.

4.

Corrigendum: CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus.

Poweleit N, Ge P, Nguyen HH, Ogorzalek Loo RR, Gunsalus RP, Zhou ZH.

Nat Microbiol. 2016 Dec 22;2:16264. doi: 10.1038/nmicrobiol.2016.264. No abstract available.

PMID:
28004660
5.

CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus.

Poweleit N, Ge P, Nguyen HH, Loo RR, Gunsalus RP, Zhou ZH.

Nat Microbiol. 2016 Dec 5;2:16222. doi: 10.1038/nmicrobiol.2016.222. Erratum in: Nat Microbiol. 2016 Dec 22;2:16264.

6.

Pyrophosphate-Dependent ATP Formation from Acetyl Coenzyme A in Syntrophus aciditrophicus, a New Twist on ATP Formation.

James KL, Ríos-Hernández LA, Wofford NQ, Mouttaki H, Sieber JR, Sheik CS, Nguyen HH, Yang Y, Xie Y, Erde J, Rohlin L, Karr EA, Loo JA, Ogorzalek Loo RR, Hurst GB, Gunsalus RP, Szweda LI, McInerney MJ.

MBio. 2016 Aug 16;7(4). pii: e01208-16. doi: 10.1128/mBio.01208-16.

7.

Discovery and Characterization of Iron Sulfide and Polyphosphate Bodies Coexisting in Archaeoglobus fulgidus Cells.

Toso DB, Javed MM, Czornyj E, Gunsalus RP, Zhou ZH.

Archaea. 2016 Apr 19;2016:4706532. doi: 10.1155/2016/4706532. eCollection 2016.

8.

Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment.

Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H.

J Mol Microbiol Biotechnol. 2016;26(1-3):5-28. doi: 10.1159/000443997. Epub 2016 Mar 10. Review.

9.

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Gunsalus RP, Cook LE, Crable B, Rohlin L, McDonald E, Mouttaki H, Sieber JR, Poweleit N, Zhou H, Lapidus AL, Daligault HE, Land M, Gilna P, Ivanova N, Kyrpides N, Culley DE, McInerney MJ.

Stand Genomic Sci. 2016 Jan 6;11:2. doi: 10.1186/s40793-015-0124-8. eCollection 2016.

10.

Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces.

Bor B, Poweleit N, Bois JS, Cen L, Bedree JK, Zhou ZH, Gunsalus RP, Lux R, McLean JS, He X, Shi W.

Microb Ecol. 2016 Jan;71(1):243-55. doi: 10.1007/s00248-015-0711-7. Epub 2015 Nov 23.

11.

The Escherichia coli NarL receiver domain regulates transcription through promoter specific functions.

Katsir G, Jarvis M, Phillips M, Ma Z, Gunsalus RP.

BMC Microbiol. 2015 Aug 26;15:174. doi: 10.1186/s12866-015-0502-9.

12.

Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1.

Leon DR, Ytterberg AJ, Boontheung P, Kim U, Loo JA, Gunsalus RP, Ogorzalek Loo RR.

Front Microbiol. 2015 Mar 5;6:149. doi: 10.3389/fmicb.2015.00149. eCollection 2015.

13.

Proteomic analysis reveals metabolic and regulatory systems involved in the syntrophic and axenic lifestyle of Syntrophomonas wolfei.

Sieber JR, Crable BR, Sheik CS, Hurst GB, Rohlin L, Gunsalus RP, McInerney MJ.

Front Microbiol. 2015 Feb 11;6:115. doi: 10.3389/fmicb.2015.00115. eCollection 2015.

14.

Structural conservation of chemotaxis machinery across Archaea and Bacteria.

Briegel A, Ortega DR, Huang AN, Oikonomou CM, Gunsalus RP, Jensen GJ.

Environ Microbiol Rep. 2015 Jun;7(3):414-9. doi: 10.1111/1758-2229.12265. Epub 2015 Apr 8.

15.

Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)).

Plugge CM, Henstra AM, Worm P, Swarts DC, Paulitsch-Fuchs AH, Scholten JC, Lykidis A, Lapidus AL, Goltsman E, Kim E, McDonald E, Rohlin L, Crable BR, Gunsalus RP, Stams AJ, McInerney MJ.

Stand Genomic Sci. 2012 Oct 10;7(1):91-106. doi: 10.4056/sigs.2996379. Epub 2012 Sep 26.

16.

EcoCyc: fusing model organism databases with systems biology.

Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Schröder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D605-12. doi: 10.1093/nar/gks1027. Epub 2012 Nov 9.

17.

Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation.

Sieber JR, McInerney MJ, Gunsalus RP.

Annu Rev Microbiol. 2012;66:429-52. doi: 10.1146/annurev-micro-090110-102844. Epub 2012 Jul 9. Review.

PMID:
22803797
18.

Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans.

Arbing MA, Chan S, Shin A, Phan T, Ahn CJ, Rohlin L, Gunsalus RP.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11812-7. doi: 10.1073/pnas.1120595109. Epub 2012 Jul 2.

19.

Identification of the major expressed S-layer and cell surface-layer-related proteins in the model methanogenic archaea: Methanosarcina barkeri Fusaro and Methanosarcina acetivorans C2A.

Rohlin L, Leon DR, Kim U, Loo JA, Ogorzalek Loo RR, Gunsalus RP.

Archaea. 2012;2012:873589. doi: 10.1155/2012/873589. Epub 2012 May 15.

20.

Structural, mass and elemental analyses of storage granules in methanogenic archaeal cells.

Toso DB, Henstra AM, Gunsalus RP, Zhou ZH.

Environ Microbiol. 2011 Sep;13(9):2587-99. doi: 10.1111/j.1462-2920.2011.02531.x. Epub 2011 Aug 19.

21.

EcoCyc: a comprehensive database of Escherichia coli biology.

Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, Sarker M, Shearer AG, Mackie A, Paulsen I, Gunsalus RP, Karp PD.

Nucleic Acids Res. 2011 Jan;39(Database issue):D583-90. doi: 10.1093/nar/gkq1143. Epub 2010 Nov 21.

22.

Apo and ligand-bound structures of ModA from the archaeon Methanosarcina acetivorans.

Chan S, Giuroiu I, Chernishof I, Sawaya MR, Chiang J, Gunsalus RP, Arbing MA, Perry LJ.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):242-50. doi: 10.1107/S1744309109055158. Epub 2010 Feb 23.

24.

Syntrophy in anaerobic global carbon cycles.

McInerney MJ, Sieber JR, Gunsalus RP.

Curr Opin Biotechnol. 2009 Dec;20(6):623-32. doi: 10.1016/j.copbio.2009.10.001. Epub 2009 Nov 10. Review.

25.

Reconstruction of the archaeal isoprenoid ether lipid biosynthesis pathway in Escherichia coli through digeranylgeranylglyceryl phosphate.

Lai D, Lluncor B, Schröder I, Gunsalus RP, Liao JC, Monbouquette HG.

Metab Eng. 2009 May;11(3):184-91. doi: 10.1016/j.ymben.2009.01.008. Epub 2009 Feb 12.

26.

S-layer, surface-accessible, and concanavalin A binding proteins of Methanosarcina acetivorans and Methanosarcina mazei.

Francoleon DR, Boontheung P, Yang Y, Kin U, Ytterberg AJ, Denny PA, Denny PC, Loo JA, Gunsalus RP, Loo RR.

J Proteome Res. 2009 Apr;8(4):1972-82. doi: 10.1021/pr800923e.

27.

EcoCyc: a comprehensive view of Escherichia coli biology.

Keseler IM, Bonavides-Martínez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Johnson DA, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD.

Nucleic Acids Res. 2009 Jan;37(Database issue):D464-70. doi: 10.1093/nar/gkn751. Epub 2008 Oct 30.

28.

Physiology, ecology, phylogeny, and genomics of microorganisms capable of syntrophic metabolism.

McInerney MJ, Struchtemeyer CG, Sieber J, Mouttaki H, Stams AJ, Schink B, Rohlin L, Gunsalus RP.

Ann N Y Acad Sci. 2008 Mar;1125:58-72. doi: 10.1196/annals.1419.005. Review.

PMID:
18378587
29.

Identification of genes involved in salt adaptation in the archaeon Methanosarcina mazei Gö1 using genome-wide gene expression profiling.

Pflüger K, Ehrenreich A, Salmon K, Gunsalus RP, Deppenmeier U, Gottschalk G, Müller V.

FEMS Microbiol Lett. 2007 Dec;277(1):79-89.

30.

Bioluminescence in Vibrio fischeri is controlled by the redox-responsive regulator ArcA.

Bose JL, Kim U, Bartkowski W, Gunsalus RP, Overley AM, Lyell NL, Visick KL, Stabb EV.

Mol Microbiol. 2007 Jul;65(2):538-53. Epub 2007 Jun 21.

31.

The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.

McInerney MJ, Rohlin L, Mouttaki H, Kim U, Krupp RS, Rios-Hernandez L, Sieber J, Struchtemeyer CG, Bhattacharyya A, Campbell JW, Gunsalus RP.

Proc Natl Acad Sci U S A. 2007 May 1;104(18):7600-5. Epub 2007 Apr 18.

32.

Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol.

Li L, Li Q, Rohlin L, Kim U, Salmon K, Rejtar T, Gunsalus RP, Karger BL, Ferry JG.

J Proteome Res. 2007 Feb;6(2):759-71.

33.

Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities.

Veit K, Ehlers C, Ehrenreich A, Salmon K, Hovey R, Gunsalus RP, Deppenmeier U, Schmitz RA.

Mol Genet Genomics. 2006 Jul;276(1):41-55. Epub 2006 Apr 20.

PMID:
16625354
34.

Primary and secondary modes of DNA recognition by the NarL two-component response regulator.

Maris AE, Kaczor-Grzeskowiak M, Ma Z, Kopka ML, Gunsalus RP, Dickerson RE.

Biochemistry. 2005 Nov 8;44(44):14538-52.

PMID:
16262254
35.

Heat shock response of Archaeoglobus fulgidus.

Rohlin L, Trent JD, Salmon K, Kim U, Gunsalus RP, Liao JC.

J Bacteriol. 2005 Sep;187(17):6046-57.

36.

DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates.

Hovey R, Lentes S, Ehrenreich A, Salmon K, Saba K, Gottschalk G, Gunsalus RP, Deppenmeier U.

Mol Genet Genomics. 2005 May;273(3):225-39. Epub 2005 Apr 7.

PMID:
15902489
37.

Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA.

Salmon KA, Hung SP, Steffen NR, Krupp R, Baldi P, Hatfield GW, Gunsalus RP.

J Biol Chem. 2005 Apr 15;280(15):15084-96. Epub 2005 Feb 7.

38.

Defining the Q-site of Escherichia coli fumarate reductase by site-directed mutagenesis, fluorescence quench titrations and EPR spectroscopy.

Rothery RA, Seime AM, Spiers AM, Maklashina E, Schröder I, Gunsalus RP, Cecchini G, Weiner JH.

FEBS J. 2005 Jan;272(2):313-26.

40.

Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.

Salmon K, Hung SP, Mekjian K, Baldi P, Hatfield GW, Gunsalus RP.

J Biol Chem. 2003 Aug 8;278(32):29837-55. Epub 2003 May 15.

41.

Phosphorylation triggers domain separation in the DNA binding response regulator NarL.

Zhang JH, Xiao G, Gunsalus RP, Hubbell WL.

Biochemistry. 2003 Mar 11;42(9):2552-9.

PMID:
12614149
42.

Dimerization allows DNA target site recognition by the NarL response regulator.

Maris AE, Sawaya MR, Kaczor-Grzeskowiak M, Jarvis MR, Bearson SM, Kopka ML, Schröder I, Gunsalus RP, Dickerson RE.

Nat Struct Biol. 2002 Oct;9(10):771-8.

PMID:
12352954
43.

Site-specific DNA cleavage of synthetic NarL sites by an engineered Escherichia coli NarL protein-1,10-phenanthroline cleaving agent.

Xiao G, Cole DL, Gunsalus RP, Sigman DS, Chen CH.

Protein Sci. 2002 Oct;11(10):2427-36. Erratum in: Protein Sci. 2003 Jan;12(1):192..

44.

The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea.

Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, Henne A, Wiezer A, Bäumer S, Jacobi C, Brüggemann H, Lienard T, Christmann A, Bömeke M, Steckel S, Bhattacharyya A, Lykidis A, Overbeek R, Klenk HP, Gunsalus RP, Fritz HJ, Gottschalk G.

J Mol Microbiol Biotechnol. 2002 Jul;4(4):453-61.

PMID:
12125824
47.

A NarX-Tar chimera mediates repellent chemotaxis to nitrate and nitrite.

Ward SM, Delgado A, Gunsalus RP, Manson MD.

Mol Microbiol. 2002 May;44(3):709-19.

48.

Succinate dehydrogenase and fumarate reductase from Escherichia coli.

Cecchini G, Schröder I, Gunsalus RP, Maklashina E.

Biochim Biophys Acta. 2002 Jan 17;1553(1-2):140-57. Review.

50.

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