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Items: 36

1.

Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.

Ashwood C, Pratt B, MacLean BX, Gundry RL, Packer NH.

Analyst. 2019 Jun 7;144(11):3601-3612. doi: 10.1039/c9an00486f. Epub 2019 May 8.

PMID:
31065629
2.

SP2: Rapid and Automatable Contaminant Removal from Peptide Samples for Proteomic Analyses.

Waas M, Pereckas M, Jones Lipinski RA, Ashwood C, Gundry RL.

J Proteome Res. 2019 Apr 5;18(4):1644-1656. doi: 10.1021/acs.jproteome.8b00916. Epub 2019 Feb 28.

3.

Are These Cardiomyocytes? Protocol Development Reveals Impact of Sample Preparation on the Accuracy of Identifying Cardiomyocytes by Flow Cytometry.

Waas M, Weerasekera R, Kropp EM, Romero-Tejeda M, Poon EN, Boheler KR, Burridge PW, Gundry RL.

Stem Cell Reports. 2019 Feb 12;12(2):395-410. doi: 10.1016/j.stemcr.2018.12.016. Epub 2019 Jan 24.

4.

Quantitative Top-Down Mass Spectrometry Identifies Proteoforms Differentially Released during Mechanical Stimulation of Mouse Skin.

Moehring F, Waas M, Keppel TR, Rathore D, Cowie AM, Stucky CL, Gundry RL.

J Proteome Res. 2018 Aug 3;17(8):2635-2648. doi: 10.1021/acs.jproteome.8b00109. Epub 2018 Jul 6.

6.

Cell Surface Proteomics of N-Linked Glycoproteins for Typing of Human Lymphocytes.

Haverland NA, Waas M, Ntai I, Keppel T, Gundry RL, Kelleher NL.

Proteomics. 2017 Oct;17(19). doi: 10.1002/pmic.201700156.

7.

Cardiomyocyte Differentiation Promotes Cell Survival During Nicotinamide Phosphoribosyltransferase Inhibition Through Increased Maintenance of Cellular Energy Stores.

Kropp EM, Broniowska KA, Waas M, Nycz A, Corbett JA, Gundry RL.

Stem Cells Transl Med. 2017 Apr;6(4):1191-1201. doi: 10.1002/sctm.16-0151. Epub 2017 Feb 22.

8.

Concise Review: Cell Surface N-Linked Glycoproteins as Potential Stem Cell Markers and Drug Targets.

Boheler KR, Gundry RL.

Stem Cells Transl Med. 2017 Jan;6(1):131-138. doi: 10.5966/sctm.2016-0109. Epub 2016 Jul 28. Review.

9.

N-glycoprotein surfaceome of human induced pluripotent stem cell derived hepatic endoderm.

Mallanna SK, Waas M, Duncan SA, Gundry RL.

Proteomics. 2017 Mar;17(5). doi: 10.1002/pmic.201600397. Epub 2017 Feb 1.

10.

Mapping the Cell-Surface N-Glycoproteome of Human Hepatocytes Reveals Markers for Selecting a Homogeneous Population of iPSC-Derived Hepatocytes.

Mallanna SK, Cayo MA, Twaroski K, Gundry RL, Duncan SA.

Stem Cell Reports. 2016 Sep 13;7(3):543-556. doi: 10.1016/j.stemcr.2016.07.016. Epub 2016 Aug 25.

11.

A mass spectrometric-derived cell surface protein atlas.

Bausch-Fluck D, Hofmann A, Bock T, Frei AP, Cerciello F, Jacobs A, Moest H, Omasits U, Gundry RL, Yoon C, Schiess R, Schmidt A, Mirkowska P, Härtlová A, Van Eyk JE, Bourquin JP, Aebersold R, Boheler KR, Zandstra P, Wollscheid B.

PLoS One. 2015 Apr 20;10(3):e0121314. doi: 10.1371/journal.pone.0121314. eCollection 2015.

12.

Bacterial expression of the phosphodiester-binding site of the cation-independent mannose 6-phosphate receptor for crystallographic and NMR studies.

Olson LJ, Jensen DR, Volkman BF, Kim JJ, Peterson FC, Gundry RL, Dahms NM.

Protein Expr Purif. 2015 Jul;111:91-7. doi: 10.1016/j.pep.2015.04.002. Epub 2015 Apr 8.

13.

Inhibition of an NAD⁺ salvage pathway provides efficient and selective toxicity to human pluripotent stem cells.

Kropp EM, Oleson BJ, Broniowska KA, Bhattacharya S, Chadwick AC, Diers AR, Hu Q, Sahoo D, Hogg N, Boheler KR, Corbett JA, Gundry RL.

Stem Cells Transl Med. 2015 May;4(5):483-93. doi: 10.5966/sctm.2014-0163. Epub 2015 Apr 1.

14.

Structure-function analysis of CCL28 in the development of post-viral asthma.

Thomas MA, Buelow BJ, Nevins AM, Jones SE, Peterson FC, Gundry RL, Grayson MH, Volkman BF.

J Biol Chem. 2015 Feb 13;290(7):4528-36. doi: 10.1074/jbc.M114.627786. Epub 2015 Jan 2.

15.

Hold or fold--proteins in advanced heart failure and myocardial recovery.

Mahr C, Gundry RL.

Proteomics Clin Appl. 2015 Feb;9(1-2):121-33. doi: 10.1002/prca.201400100. Epub 2015 Jan 2. Review.

16.

High efficiency differentiation of human pluripotent stem cells to cardiomyocytes and characterization by flow cytometry.

Bhattacharya S, Burridge PW, Kropp EM, Chuppa SL, Kwok WM, Wu JC, Boheler KR, Gundry RL.

J Vis Exp. 2014 Sep 23;(91):52010. doi: 10.3791/52010.

17.

A human pluripotent stem cell surface N-glycoproteome resource reveals markers, extracellular epitopes, and drug targets.

Boheler KR, Bhattacharya S, Kropp EM, Chuppa S, Riordon DR, Bausch-Fluck D, Burridge PW, Wu JC, Wersto RP, Chan GC, Rao S, Wollscheid B, Gundry RL.

Stem Cell Reports. 2014 Jun 6;3(1):185-203. doi: 10.1016/j.stemcr.2014.05.002. eCollection 2014 Jul 8.

18.

N-glycoprotein surfaceomes of four developmentally distinct mouse cell types.

Kropp EM, Bhattacharya S, Waas M, Chuppa SL, Hadjantonakis AK, Boheler KR, Gundry RL.

Proteomics Clin Appl. 2014 Aug;8(7-8):603-9. doi: 10.1002/prca.201400021.

19.

Combine and conquer: surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins.

Waas M, Bhattacharya S, Chuppa S, Wu X, Jensen DR, Omasits U, Wollscheid B, Volkman BF, Noon KR, Gundry RL.

Anal Chem. 2014 Feb 4;86(3):1551-9. doi: 10.1021/ac403185a. Epub 2014 Jan 21.

20.

A cell surfaceome map for immunophenotyping and sorting pluripotent stem cells.

Gundry RL, Riordon DR, Tarasova Y, Chuppa S, Bhattacharya S, Juhasz O, Wiedemeier O, Milanovich S, Noto FK, Tchernyshyov I, Raginski K, Bausch-Fluck D, Tae HJ, Marshall S, Duncan SA, Wollscheid B, Wersto RP, Rao S, Van Eyk JE, Boheler KR.

Mol Cell Proteomics. 2012 Aug;11(8):303-16. doi: 10.1074/mcp.M112.018135. Epub 2012 Apr 6.

21.

Human ESC/iPSC-based "Omics" and Bioinformatics for Translational Research.

Müller G, Tarasov KV, Gundry RL, Boheler KR.

Drug Discov Today Dis Models. 2012;9(4):e161-e170.

22.

Embryonic stem cell-derived cardiomyocyte heterogeneity and the isolation of immature and committed cells for cardiac remodeling and regeneration.

Boheler KR, Joodi RN, Qiao H, Juhasz O, Urick AL, Chuppa SL, Gundry RL, Wersto RP, Zhou R.

Stem Cells Int. 2011;2011:214203. doi: 10.4061/2011/214203. Epub 2011 Sep 6.

23.

Pluripotent stem cell heterogeneity and the evolving role of proteomic technologies in stem cell biology.

Gundry RL, Burridge PW, Boheler KR.

Proteomics. 2011 Oct;11(20):3947-61. doi: 10.1002/pmic.201100100. Epub 2011 Sep 8. Review.

24.
25.

Expanding the mouse embryonic stem cell proteome: combining three proteomic approaches.

Gundry RL, Tchernyshyov I, Sheng S, Tarasova Y, Raginski K, Boheler KR, Van Eyk JE.

Proteomics. 2010 Jul;10(14):2728-32. doi: 10.1002/pmic.201000039.

26.

Preparation of proteins and peptides for mass spectrometry analysis in a bottom-up proteomics workflow.

Gundry RL, White MY, Murray CI, Kane LA, Fu Q, Stanley BA, Van Eyk JE.

Curr Protoc Mol Biol. 2009 Oct;Chapter 10:Unit10.25. doi: 10.1002/0471142727.mb1025s88. Review.

27.

The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation.

Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, Elliott ST, Boheler KR, Van Eyk JE, Wollscheid B.

Mol Cell Proteomics. 2009 Nov;8(11):2555-69. doi: 10.1074/mcp.M900195-MCP200. Epub 2009 Aug 4.

28.

A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface.

Gundry RL, Boheler KR, Van Eyk JE, Wollscheid B.

Proteomics Clin Appl. 2008 Jun 12;2(6):892-903.

29.

Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samples.

Gundry RL, White MY, Nogee J, Tchernyshyov I, Van Eyk JE.

Proteomics. 2009 Apr;9(7):2021-8. doi: 10.1002/pmic.200800686.

30.

Unraveling the complexity of circulating forms of brain natriuretic peptide.

Gundry RL, Van Eyk JE.

Clin Chem. 2007 Jul;53(7):1181-2. No abstract available.

31.

Mitochondrial DNA analysis of the domestic dog: control region variation within and among breeds.

Gundry RL, Allard MW, Moretti TR, Honeycutt RL, Wilson MR, Monson KL, Foran DR.

J Forensic Sci. 2007 May;52(3):562-72.

PMID:
17456083
32.

Investigation of an albumin-enriched fraction of human serum and its albuminome.

Gundry RL, Fu Q, Jelinek CA, Van Eyk JE, Cotter RJ.

Proteomics Clin Appl. 2007 Jan 1;1(1):73-88.

33.

When does a fingerprint constitute a diagnostic?

White MY, Gundry RL, Cordwell SJ.

Lancet. 2006 Sep 16;368(9540):971-3. No abstract available.

PMID:
16980095
34.

Disposable hydrophobic surface on MALDI targets for enhancing MS and MS/MS data of peptides.

Gundry RL, Edward R, Kole TP, Sutton C, Cotter RJ.

Anal Chem. 2005 Oct 15;77(20):6609-17.

PMID:
16223247
35.

Heart disease, clinical proteomics and mass spectrometry.

Stanley BA, Gundry RL, Cotter RJ, Van Eyk JE.

Dis Markers. 2004;20(3):167-78. Review.

36.

4-Aminopiperidine-4-carboxylic Acid: A Cyclic alpha,alpha-Disubstituted Amino Acid for Preparation of Water-Soluble Highly Helical Peptides.

Wysong CL, Yokum TS, Morales GA, Gundry RL, McLaughlin ML, Hammer RP.

J Org Chem. 1996 Nov 1;61(22):7650-7651. No abstract available.

PMID:
11667711

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