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Items: 1 to 50 of 106

1.

Population Genomics of an Obligately Halophilic Basidiomycete Wallemia ichthyophaga.

Gostinčar C, Sun X, Zajc J, Fang C, Hou Y, Luo Y, Gunde-Cimerman N, Song Z.

Front Microbiol. 2019 Sep 4;10:2019. doi: 10.3389/fmicb.2019.02019. eCollection 2019.

2.

Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola.

Sun X, Gostinčar C, Fang C, Zajc J, Hou Y, Song Z, Gunde-Cimerman N.

Genes (Basel). 2019 Jun 4;10(6). pii: E427. doi: 10.3390/genes10060427.

3.

Fifty Aureobasidium pullulans genomes reveal a recombining polyextremotolerant generalist.

Gostinčar C, Turk M, Zajc J, Gunde-Cimerman N.

Environ Microbiol. 2019 Oct;21(10):3638-3652. doi: 10.1111/1462-2920.14693. Epub 2019 Jun 18.

PMID:
31112354
4.

Biogenic Sources of Ice Nucleating Particles at the High Arctic Site Villum Research Station.

Šantl-Temkiv T, Lange R, Beddows D, Rauter U, Pilgaard S, Dall'Osto M, Gunde-Cimerman N, Massling A, Wex H.

Environ Sci Technol. 2019 Sep 17;53(18):10580-10590. doi: 10.1021/acs.est.9b00991. Epub 2019 Aug 28.

PMID:
31094516
5.

Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom.

Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N.

Front Microbiol. 2019 Mar 21;10:557. doi: 10.3389/fmicb.2019.00557. eCollection 2019.

6.

Reviewing the taxonomy of Podaxis: Opportunities for understanding extreme fungal lifestyles.

Conlon BH, Aanen DK, Beemelmanns C, de Beer ZW, De Fine Licht HH, Gunde-Cimerman N, Schiøtt M, Poulsen M.

Fungal Biol. 2019 Mar;123(3):183-187. doi: 10.1016/j.funbio.2019.01.001. Epub 2019 Jan 11. Review.

7.

First demonstration that ascomycetous halophilic fungi (Aspergillus sydowii and Aspergillus destruens) are useful in xenobiotic mycoremediation under high salinity conditions.

González-Abradelo D, Pérez-Llano Y, Peidro-Guzmán H, Sánchez-Carbente MDR, Folch-Mallol JL, Aranda E, Vaidyanathan VK, Cabana H, Gunde-Cimerman N, Batista-García RA.

Bioresour Technol. 2019 May;279:287-296. doi: 10.1016/j.biortech.2019.02.002. Epub 2019 Feb 2.

PMID:
30738355
8.

Stress-Tolerant Yeasts: Opportunistic Pathogenicity Versus Biocontrol Potential.

Zajc J, Gostinčar C, Černoša A, Gunde-Cimerman N.

Genes (Basel). 2019 Jan 14;10(1). pii: E42. doi: 10.3390/genes10010042.

9.

Opportunistic Water-Borne Human Pathogenic Filamentous Fungi Unreported from Food.

Novak Babič M, Zupančič J, Brandão J, Gunde-Cimerman N.

Microorganisms. 2018 Aug 3;6(3). pii: E79. doi: 10.3390/microorganisms6030079. Review.

10.

Global Molecular Diversity of the Halotolerant Fungus Hortaea werneckii.

Marchetta A, Gerrits van den Ende B, Al-Hatmi AMS, Hagen F, Zalar P, Sudhadham M, Gunde-Cimerman N, Urzì C, de Hoog S, De Leo F.

Life (Basel). 2018 Jul 23;8(3). pii: E31. doi: 10.3390/life8030031.

11.

Opportunistic fungal pathogens isolated from a captive individual of the European blind cave salamander Proteus anguinus.

Bizjak-Mali L, Zalar P, Turk M, Babicč MN, Kostanjšek R, Gunde-Cimerman N.

Dis Aquat Organ. 2018 Jun 19;129(1):15-30. doi: 10.3354/dao03229.

PMID:
29916389
12.

The Genus Wallemia-From Contamination of Food to Health Threat.

Zajc J, Gunde-Cimerman N.

Microorganisms. 2018 May 21;6(2). pii: E46. doi: 10.3390/microorganisms6020046. Review.

13.

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast.

Gostinčar C, Stajich JE, Zupančič J, Zalar P, Gunde-Cimerman N.

BMC Genomics. 2018 May 15;19(1):364. doi: 10.1186/s12864-018-4751-5.

14.

Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from European Cold Environments and Arctic Region.

Turchetti B, Selbmann L, Gunde-Cimerman N, Buzzini P, Sampaio JP, Zalar P.

Life (Basel). 2018 May 5;8(2). pii: E9. doi: 10.3390/life8020009.

15.

Strategies of adaptation of microorganisms of the three domains of life to high salt concentrations.

Gunde-Cimerman N, Plemenitaš A, Oren A.

FEMS Microbiol Rev. 2018 May 1;42(3):353-375. doi: 10.1093/femsre/fuy009. Review.

PMID:
29529204
16.

Overview of Oxidative Stress Response Genes in Selected Halophilic Fungi.

Gostinčar C, Gunde-Cimerman N.

Genes (Basel). 2018 Mar 6;9(3). pii: E143. doi: 10.3390/genes9030143.

17.

Genome mining for peptidases in heat-tolerant and mesophilic fungi and putative adaptations for thermostability.

de Oliveira TB, Gostinčar C, Gunde-Cimerman N, Rodrigues A.

BMC Genomics. 2018 Feb 20;19(1):152. doi: 10.1186/s12864-018-4549-5.

18.

Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers.

Zupančič J, Raghupathi PK, Houf K, Burmølle M, Sørensen SJ, Gunde-Cimerman N.

Front Microbiol. 2018 Jan 30;9:21. doi: 10.3389/fmicb.2018.00021. eCollection 2018.

19.

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.

Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, Malfatti SA, Rubinfeld B, Courtot M, Singh J, Dalgard CL, Hamilton T, Frey KG, Gunde-Cimerman N, Dugan L, Daly MJ.

Front Microbiol. 2018 Jan 8;8:2528. doi: 10.3389/fmicb.2017.02528. eCollection 2017.

20.

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities.

Raghupathi PK, Zupančič J, Brejnrod AD, Jacquiod S, Houf K, Burmølle M, Gunde-Cimerman N, Sørensen SJ.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02755-17. doi: 10.1128/AEM.02755-17. Print 2018 Mar 1.

21.

Phylogeny of xerophilic aspergilli (subgenus Aspergillus) and taxonomic revision of section Restricti.

Sklenář F, Jurjević Ž, Zalar P, Frisvad JC, Visagie CM, Kolařík M, Houbraken J, Chen AJ, Yilmaz N, Seifert KA, Coton M, Déniel F, Gunde-Cimerman N, Samson RA, Peterson SW, Hubka V.

Stud Mycol. 2017 Sep;88:161-236. doi: 10.1016/j.simyco.2017.09.002. Epub 2017 Sep 27.

22.

Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance.

Sharma A, Gaidamakova EK, Grichenko O, Matrosova VY, Hoeke V, Klimenkova P, Conze IH, Volpe RP, Tkavc R, Gostinčar C, Gunde-Cimerman N, DiRuggiero J, Shuryak I, Ozarowski A, Hoffman BM, Daly MJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9253-E9260. doi: 10.1073/pnas.1713608114. Epub 2017 Oct 17.

23.

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

Matrosova VY, Gaidamakova EK, Makarova KS, Grichenko O, Klimenkova P, Volpe RP, Tkavc R, Ertem G, Conze IH, Brambilla E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Daligault H, Davenport K, Erkkila T, Goodwin LA, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woolbert M, Gunde-Cimerman N, Wolf YI, Grebenc T, Gostinčar C, Daly MJ.

Stand Genomic Sci. 2017 Jul 28;12:46. doi: 10.1186/s40793-017-0258-y. eCollection 2017.

24.

Aspergillus atacamensis and A. salisburgensis: two new halophilic species from hypersaline/arid habitats with a phialosimplex-like morphology.

Martinelli L, Zalar P, Gunde-Cimerman N, Azua-Bustos A, Sterflinger K, Piñar G.

Extremophiles. 2017 Jul;21(4):755-773. doi: 10.1007/s00792-017-0941-3. Epub 2017 May 12.

PMID:
28500388
25.

Ecology of the Human Opportunistic Black Yeast Exophiala dermatitidis Indicates Preference for Human-Made Habitats.

Babič MN, Zupančič J, Gunde-Cimerman N, de Hoog S, Zalar P.

Mycopathologia. 2018 Feb;183(1):201-212. doi: 10.1007/s11046-017-0134-8. Epub 2017 Apr 26. Review.

PMID:
28447292
26.

Candida parapsilosis in domestic laundry machines.

Dögen A, Sav H, Gonca S, Kaplan E, Ilkit M, Novak Babic M, Gunde-Cimerman N, de Hoog GS.

Med Mycol. 2017 Nov 1;55(8):813-819. doi: 10.1093/mmy/myx008.

PMID:
28204594
27.

Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions.

Jančič S, Frisvad JC, Kocev D, Gostinčar C, Džeroski S, Gunde-Cimerman N.

PLoS One. 2016 Dec 30;11(12):e0169116. doi: 10.1371/journal.pone.0169116. eCollection 2016.

28.

Aerobiology Over Antarctica - A New Initiative for Atmospheric Ecology.

Pearce DA, Alekhina IA, Terauds A, Wilmotte A, Quesada A, Edwards A, Dommergue A, Sattler B, Adams BJ, Magalhães C, Chu WL, Lau MC, Cary C, Smith DJ, Wall DH, Eguren G, Matcher G, Bradley JA, de Vera JP, Elster J, Hughes KA, Cuthbertson L, Benning LG, Gunde-Cimerman N, Convey P, Hong SG, Pointing SB, Pellizari VH, Vincent WF.

Front Microbiol. 2016 Feb 16;7:16. doi: 10.3389/fmicb.2016.00016. eCollection 2016.

29.

The Black Yeast Exophiala dermatitidis and Other Selected Opportunistic Human Fungal Pathogens Spread from Dishwashers to Kitchens.

Zupančič J, Novak Babič M, Zalar P, Gunde-Cimerman N.

PLoS One. 2016 Feb 11;11(2):e0148166. doi: 10.1371/journal.pone.0148166. eCollection 2016.

30.

Polygenic analysis and targeted improvement of the complex trait of high acetic acid tolerance in the yeast Saccharomyces cerevisiae.

Meijnen JP, Randazzo P, Foulquié-Moreno MR, van den Brink J, Vandecruys P, Stojiljkovic M, Dumortier F, Zalar P, Boekhout T, Gunde-Cimerman N, Kokošar J, Štajdohar M, Curk T, Petrovič U, Thevelein JM.

Biotechnol Biofuels. 2016 Jan 6;9:5. doi: 10.1186/s13068-015-0421-x. eCollection 2016.

31.

A Taxonomic Revision of the Wallemia sebi Species Complex.

Jančič S, Nguyen HD, Frisvad JC, Zalar P, Schroers HJ, Seifert KA, Gunde-Cimerman N.

PLoS One. 2015 May 27;10(5):e0125933. doi: 10.1371/journal.pone.0125933. eCollection 2015.

32.

Application of the phylogenetic species concept to Wallemia sebi from house dust and indoor air revealed by multi-locus genealogical concordance.

Nguyen HD, Jančič S, Meijer M, Tanney JB, Zalar P, Gunde-Cimerman N, Seifert KA.

PLoS One. 2015 Mar 23;10(3):e0120894. doi: 10.1371/journal.pone.0120894. eCollection 2015. Erratum in: PLoS One. 2015;10(5):e0129752.

33.

Candida and Fusarium species known as opportunistic human pathogens from customer-accessible parts of residential washing machines.

Babič MN, Zalar P, Ženko B, Schroers HJ, Džeroski S, Gunde-Cimerman N.

Fungal Biol. 2015 Mar;119(2-3):95-113. doi: 10.1016/j.funbio.2014.10.007. Epub 2015 Jan 8.

PMID:
25749362
34.

Chaophilic or chaotolerant fungi: a new category of extremophiles?

Zajc J, Džeroski S, Kocev D, Oren A, Sonjak S, Tkavc R, Gunde-Cimerman N.

Front Microbiol. 2014 Dec 23;5:708. doi: 10.3389/fmicb.2014.00708. eCollection 2014.

35.

Is there a common water-activity limit for the three domains of life?

Stevenson A, Cray JA, Williams JP, Santos R, Sahay R, Neuenkirchen N, McClure CD, Grant IR, Houghton JD, Quinn JP, Timson DJ, Patil SV, Singhal RS, Antón J, Dijksterhuis J, Hocking AD, Lievens B, Rangel DE, Voytek MA, Gunde-Cimerman N, Oren A, Timmis KN, McGenity TJ, Hallsworth JE.

ISME J. 2015 Jun;9(6):1333-51. doi: 10.1038/ismej.2014.219. Epub 2014 Dec 12.

36.

Increased diversity in the genus Debaryomyces from Arctic glacier samples.

Jacques N, Zenouche A, Gunde-Cimerman N, Casaregola S.

Antonie Van Leeuwenhoek. 2015 Feb;107(2):487-501. doi: 10.1007/s10482-014-0345-7. Epub 2014 Dec 6.

PMID:
25480727
37.

Penicillium salamii, a new species occurring during seasoning of dry-cured meat.

Perrone G, Samson RA, Frisvad JC, Susca A, Gunde-Cimerman N, Epifani F, Houbraken J.

Int J Food Microbiol. 2015 Jan 16;193:91-8. doi: 10.1016/j.ijfoodmicro.2014.10.023. Epub 2014 Oct 23.

PMID:
25462928
38.

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.

Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N.

BMC Genomics. 2014 Jul 1;15:549. doi: 10.1186/1471-2164-15-549.

39.

Salty sisters: The women of halophiles.

Baxter BK, Gunde-Cimerman N, Oren A.

Front Microbiol. 2014 Jun 4;5:192. doi: 10.3389/fmicb.2014.00192. eCollection 2014.

40.

Adaptation to high salt concentrations in halotolerant/halophilic fungi: a molecular perspective.

Plemenitaš A, Lenassi M, Konte T, Kejžar A, Zajc J, Gostinčar C, Gunde-Cimerman N.

Front Microbiol. 2014 May 5;5:199. doi: 10.3389/fmicb.2014.00199. eCollection 2014. Review.

41.

Biological activities of organic extracts of four Aureobasidium pullulans varieties isolated from extreme marine and terrestrial habitats.

Botić T, Kralj-Kunčič M, Sepčić K, Batista U, Zalar P, Knez Ž, Gunde-Cimerman N.

Nat Prod Res. 2014;28(12):874-82. doi: 10.1080/14786419.2014.888554. Epub 2014 Feb 28.

PMID:
24579879
42.

Insertion of a specific fungal 3'-phosphoadenosine-5'-phosphatase motif into a plant homologue improves halotolerance and drought tolerance of plants.

Gašparič MB, Lenassi M, Gostinčar C, Rotter A, Plemenitaš A, Gunde-Cimerman N, Gruden K, Zel J.

PLoS One. 2013 Dec 9;8(12):e81872. doi: 10.1371/journal.pone.0081872. eCollection 2013.

43.

Osmoadaptation strategy of the most halophilic fungus, Wallemia ichthyophaga, growing optimally at salinities above 15% NaCl.

Zajc J, Kogej T, Galinski EA, Ramos J, Gunde-Cimerman N.

Appl Environ Microbiol. 2014 Jan;80(1):247-56. doi: 10.1128/AEM.02702-13. Epub 2013 Oct 25.

44.

Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent.

Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N.

BMC Genomics. 2013 Sep 13;14:617. doi: 10.1186/1471-2164-14-617.

45.

Morphological responses to high sugar concentrations differ from adaptation to high salt concentrations in the xerophilic fungi Wallemia spp.

Kralj Kunčič M, Zajc J, Drobne D, Pipan Tkalec Z, Gunde-Cimerman N.

Fungal Biol. 2013 Jul-Aug;117(7-8):466-78. doi: 10.1016/j.funbio.2013.04.003. Epub 2013 Apr 17.

PMID:
23931114
46.

Fungal communities of young and mature hypersaline microbial mats.

Cantrell SA, Tkavc R, Gunde-Cimerman N, Zalar P, Acevedo M, Báez-Félix C.

Mycologia. 2013 Jul-Aug;105(4):827-36. doi: 10.3852/12-288. Epub 2013 May 24.

PMID:
23709488
47.

Antibacterial and antimycotic activities of Slovenian honeys.

Kuncic MK, Jaklic D, Lapanje A, Gunde-Cimerman N.

Br J Biomed Sci. 2012;69(4):154-8.

PMID:
23304790
48.

Polar and alpine microbiology.

Gunde-Cimerman N, Wagner D, Häggblom M.

FEMS Microbiol Ecol. 2012 Nov;82(2):215-6. doi: 10.1111/1574-6941.12004. No abstract available.

49.

Cryptococcus species (Tremellales) from glacial biomes in the southern (Patagonia) and northern (Svalbard) hemispheres.

de Garcia V, Zalar P, Brizzio S, Gunde-Cimerman N, van Broock M.

FEMS Microbiol Ecol. 2012 Nov;82(2):523-39. doi: 10.1111/j.1574-6941.2012.01465.x. Epub 2012 Aug 21.

50.

Genetic resources of extremotolerant fungi: a method for identification of genes conferring stress tolerance.

Gostinčar C, Gunde-Cimerman N, Turk M.

Bioresour Technol. 2012 May;111:360-7. doi: 10.1016/j.biortech.2012.02.039. Epub 2012 Feb 17.

PMID:
22386631

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