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Items: 25

1.

Data on the time of integration of the human mitochondrial pseudogenes (NUMTs) into the nuclear genome.

Gunbin K, Peshkin L, Popadin K, Annis S, Ackermann RR, Khrapko K.

Data Brief. 2017 May 17;13:536-544. doi: 10.1016/j.dib.2017.05.024. eCollection 2017 Aug.

2.

Orthoscape: a cytoscape application for grouping and visualization KEGG based gene networks by taxonomy and homology principles.

Mustafin ZS, Lashin SA, Matushkin YG, Gunbin KV, Afonnikov DA.

BMC Bioinformatics. 2017 Jan 27;18(Suppl 1):1427. doi: 10.1186/s12859-016-1427-5.

3.

Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation.

Gunbin KV, Ponomarenko MP, Suslov VV, Gusev F, Fedonin GG, Rogaev EI.

Mol Neurobiol. 2018 Mar;55(3):1871-1904. doi: 10.1007/s12035-017-0427-4. Epub 2017 Feb 24.

PMID:
28233272
4.

Integration of mtDNA pseudogenes into the nuclear genome coincides with speciation of the human genus. A hypothesis.

Gunbin K, Peshkin L, Popadin K, Annis S, Ackermann RR, Khrapko K.

Mitochondrion. 2017 May;34:20-23. doi: 10.1016/j.mito.2016.12.001. Epub 2016 Dec 12.

PMID:
27979772
5.

Complete Genome Sequences of Two Newcastle Disease Virus Strains Isolated from a Wild Duck and a Pigeon in Russia.

Kabilov MR, Alikina TY, Yurchenko KS, Glushchenko AV, Gunbin KV, Shestopalov AM, Gubanova NV.

Genome Announc. 2016 Dec 8;4(6). pii: e01348-16. doi: 10.1128/genomeA.01348-16.

6.

The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements.

Evtushenko EV, Levitsky VG, Elisafenko EA, Gunbin KV, Belousov AI, Šafář J, Doležel J, Vershinin AV.

BMC Genomics. 2016 May 4;17:337. doi: 10.1186/s12864-016-2667-5.

7.

The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain.

Gunbin KV, Afonnikov DA, Kolchanov NA, Derevianko AP, Rogaev EI.

BMC Genomics. 2015;16 Suppl 13:S4. doi: 10.1186/1471-2164-16-S13-S4. Epub 2015 Dec 16.

8.

Plant auxin biosynthesis did not originate in charophytes.

Turnaev II, Gunbin KV, Afonnikov DA.

Trends Plant Sci. 2015 Aug;20(8):463-5. doi: 10.1016/j.tplants.2015.06.004. Epub 2015 Jul 15. No abstract available.

PMID:
26186977
9.

Divergence and population traits in evolution of the genus Pisum L. as reconstructed using genes of two histone H1 subtypes showing different phylogenetic resolution.

Zaytseva OO, Gunbin KV, Mglinets AV, Kosterin OE.

Gene. 2015 Feb 10;556(2):235-44. doi: 10.1016/j.gene.2014.11.062. Epub 2014 Dec 2.

PMID:
25476028
10.

Mitochondrial DNA mutations and cancer: lessons from the parathyroid.

Popadin K, Gunbin KV, Khrapko K.

Am J Pathol. 2014 Nov;184(11):2852-4. doi: 10.1016/j.ajpath.2014.09.001. Epub 2014 Sep 19. No abstract available.

PMID:
25242389
11.

Abundances of microRNAs in human cells can be estimated as a function of the abundances of YRHB and RHHK tetranucleotides in these microRNAs as an ill-posed inverse problem solution.

Ponomarenko MP, Suslov VV, Ponomarenko PM, Gunbin KV, Stepanenko IL, Vishnevsky OV, Kolchanov NA.

Front Genet. 2013 Jul 1;4:122. doi: 10.3389/fgene.2013.00122. eCollection 2013.

12.

Evolution of general transcription factors.

Gunbin KV, Ruvinsky A.

J Mol Evol. 2013 Feb;76(1-2):28-47. doi: 10.1007/s00239-012-9535-y. Epub 2012 Dec 11.

PMID:
23229069
13.

Computer and statistical analysis of transcription factor binding and chromatin modifications by ChIP-seq data in embryonic stem cell.

Orlov Y, Xu H, Afonnikov D, Lim B, Heng JC, Yuan P, Chen M, Yan J, Clarke N, Orlova N, Huss M, Gunbin K, Podkolodnyy N, Ng HH.

J Integr Bioinform. 2012 Sep 18;9(2):211. doi: 10.2390/biecoll-jib-2012-211.

PMID:
22987856
14.

Detection of mitochondrial DNA from domestic cattle in European bison (Bison bonasus) from the Altai Republic in Russia.

Yudin NS, Kulikov IV, Gunbin KV, Aitnazarov RB, Kushnir AV, Sipko TP, Moshkin MP.

Anim Genet. 2012 Jun;43(3):362. doi: 10.1111/j.1365-2052.2011.02261.x. Epub 2011 Oct 10. No abstract available.

PMID:
22486514
15.

Molecular evolution of cyclin proteins in animals and fungi.

Gunbin KV, Suslov VV, Turnaev II, Afonnikov DA, Kolchanov NA.

BMC Evol Biol. 2011 Jul 28;11:224. doi: 10.1186/1471-2148-11-224.

16.

Important role of hydrophobic interactions in high-pressure adaptation of proteins.

Afonnikov DA, Medvedev KE, Gunbin KV, Kolchanov NA.

Dokl Biochem Biophys. 2011 May-Jun;438:113-6. doi: 10.1134/S160767291103001X. Epub 2011 Jul 3. No abstract available.

PMID:
21725885
17.

Computer System for Analysis of Molecular Evolution Modes (SAMEM): analysis of molecular evolution modes at deep inner branches of the phylogenetic tree.

Gunbin KV, Suslov VV, Genaev MA, Afonnikov DA.

In Silico Biol. 2011-2012;11(3-4):109-23. doi: 10.3233/ISB-2012-0446.

PMID:
22935965
18.

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Gunbin KV, Afonnikov DA, Kolchanov NA.

BMC Genomics. 2009 Dec 30;10:639. doi: 10.1186/1471-2164-10-639.

19.

The evolution of key cell cycle proteins correlates with an increase in the complexity of eukaryotic organisms.

Turnaev II, Gunbin KV, Kolchanov NA.

Dokl Biochem Biophys. 2009 May-Jun;426:147-51. No abstract available.

PMID:
19650308
20.

Adaptive evolution of genes of archaea belonging to the genus Pyrococcus associated with adaptation to life under high-pressure conditions.

Gunbin KV, Afonnikov DA, Boldyreva EV, Kolchanov NA.

Dokl Biochem Biophys. 2009 Mar-Apr;425:91-3. No abstract available.

PMID:
19496330
21.

The evolution of the Hh-signaling pathway genes: a computer-assisted study.

Gunbin KV, Afonnikov DA, Kolchanov NA.

In Silico Biol. 2007;7(3):333-54.

PMID:
18415981
22.

Molecular-genetic systems of development: functional dynamics and molecular evolution.

Gunbin KV, Suslov VV, Kolchanov NA.

Biochemistry (Mosc). 2008 Feb;73(2):219-30.

PMID:
18298379
23.

Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals.

Popadin K, Polishchuk LV, Mamirova L, Knorre D, Gunbin K.

Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13390-5. Epub 2007 Aug 6.

24.

Model of the reception of hedgehog morphogen concentration gradient: comparison with an extended range of experimental data.

Gunbin KV, Omelyanchuk LV, Kogai VV, Fadeev SI, Kolchanov NA.

J Bioinform Comput Biol. 2007 Apr;5(2B):491-506.

PMID:
17636857
25.

vasa-related genes and their expression in stem cells of colonial parasitic rhizocephalan barnacle Polyascus polygenea (Arthropoda: Crustacea: Cirripedia: Rhizocephala).

Shukalyuk AI, Golovnina KA, Baiborodin SI, Gunbin KV, Blinov AG, Isaeva VV.

Cell Biol Int. 2007 Feb;31(2):97-108. Epub 2006 Sep 23.

PMID:
17085060

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