Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 29

1.

Addition of antibacterial agent effect on color stability of composites after immersion of different beverages.

Tuncdemir MT, Gulbahce N.

J Esthet Restor Dent. 2019 Sep;31(5):508-513. doi: 10.1111/jerd.12513. Epub 2019 Jul 18.

PMID:
31318131
2.

Advanced Whole-Genome Sequencing and Analysis of Fetal Genomes from Amniotic Fluid.

Mao Q, Chin R, Xie W, Deng Y, Zhang W, Xu H, Zhang RY, Shi Q, Peters EE, Gulbahce N, Li Z, Chen F, Drmanac R, Peters BA.

Clin Chem. 2018 Apr;64(4):715-725. doi: 10.1373/clinchem.2017.281220. Epub 2018 Mar 15.

3.

Quantitative Whole Genome Sequencing of Circulating Tumor Cells Enables Personalized Combination Therapy of Metastatic Cancer.

Gulbahce N, Magbanua MJM, Chin R, Agarwal MR, Luo X, Liu J, Hayden DM, Mao Q, Ciotlos S, Li Z, Chen Y, Chen X, Li Y, Zhang RY, Lee K, Tearle R, Park E, Drmanac S, Rugo HS, Park JW, Drmanac R, Peters BA.

Cancer Res. 2017 Aug 15;77(16):4530-4541. doi: 10.1158/0008-5472.CAN-17-0688.

4.

Extensive sequencing of seven human genomes to characterize benchmark reference materials.

Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M.

Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25.

5.

Whole genome sequence analysis of BT-474 using complete Genomics' standard and long fragment read technologies.

Ciotlos S, Mao Q, Zhang RY, Li Z, Chin R, Gulbahce N, Liu SJ, Drmanac R, Peters BA.

Gigascience. 2016 Feb 9;5:8. doi: 10.1186/s13742-016-0113-x. eCollection 2016.

6.

Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection.

Mirrashidi KM, Elwell CA, Verschueren E, Johnson JR, Frando A, Von Dollen J, Rosenberg O, Gulbahce N, Jang G, Johnson T, Jäger S, Gopalakrishnan AM, Sherry J, Dunn JD, Olive A, Penn B, Shales M, Cox JS, Starnbach MN, Derre I, Valdivia R, Krogan NJ, Engel J.

Cell Host Microbe. 2015 Jul 8;18(1):109-21. doi: 10.1016/j.chom.2015.06.004. Epub 2015 Jun 25.

7.

Scoring Large-Scale Affinity Purification Mass Spectrometry Datasets with MiST.

Verschueren E, Von Dollen J, Cimermancic P, Gulbahce N, Sali A, Krogan NJ.

Curr Protoc Bioinformatics. 2015 Mar 9;49:8.19.1-8.19.16. doi: 10.1002/0471250953.bi0819s49.

8.

Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing.

Peters BA, Kermani BG, Alferov O, Agarwal MR, McElwain MA, Gulbahce N, Hayden DM, Tang YT, Zhang RY, Tearle R, Crain B, Prates R, Berkeley A, Munné S, Drmanac R.

Genome Res. 2015 Mar;25(3):426-34. doi: 10.1101/gr.181255.114. Epub 2015 Feb 11.

9.

A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma.

Sharma A, Menche J, Huang CC, Ort T, Zhou X, Kitsak M, Sahni N, Thibault D, Voung L, Guo F, Ghiassian SD, Gulbahce N, Baribaud F, Tocker J, Dobrin R, Barnathan E, Liu H, Panettieri RA Jr, Tantisira KG, Qiu W, Raby BA, Silverman EK, Vidal M, Weiss ST, Barabási AL.

Hum Mol Genet. 2015 Jun 1;24(11):3005-20. doi: 10.1093/hmg/ddv001. Epub 2015 Jan 12.

10.

Network-based analysis of genome wide association data provides novel candidate genes for lipid and lipoprotein traits.

Sharma A, Gulbahce N, Pevzner SJ, Menche J, Ladenvall C, Folkersen L, Eriksson P, Orho-Melander M, Barabási AL.

Mol Cell Proteomics. 2013 Nov;12(11):3398-408. doi: 10.1074/mcp.M112.024851. Epub 2013 Jul 23.

11.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.

Rozenblatt-Rosen O, Deo RC, Padi M, Adelmant G, Calderwood MA, Rolland T, Grace M, Dricot A, Askenazi M, Tavares M, Pevzner SJ, Abderazzaq F, Byrdsong D, Carvunis AR, Chen AA, Cheng J, Correll M, Duarte M, Fan C, Feltkamp MC, Ficarro SB, Franchi R, Garg BK, Gulbahce N, Hao T, Holthaus AM, James R, Korkhin A, Litovchick L, Mar JC, Pak TR, Rabello S, Rubio R, Shen Y, Singh S, Spangle JM, Tasan M, Wanamaker S, Webber JT, Roecklein-Canfield J, Johannsen E, Barabási AL, Beroukhim R, Kieff E, Cusick ME, Hill DE, Münger K, Marto JA, Quackenbush J, Roth FP, DeCaprio JA, Vidal M.

Nature. 2012 Jul 26;487(7408):491-5. doi: 10.1038/nature11288.

12.

Viral perturbations of host networks reflect disease etiology.

Gulbahce N, Yan H, Dricot A, Padi M, Byrdsong D, Franchi R, Lee DS, Rozenblatt-Rosen O, Mar JC, Calderwood MA, Baldwin A, Zhao B, Santhanam B, Braun P, Simonis N, Huh KW, Hellner K, Grace M, Chen A, Rubio R, Marto JA, Christakis NA, Kieff E, Roth FP, Roecklein-Canfield J, Decaprio JA, Cusick ME, Quackenbush J, Hill DE, Münger K, Vidal M, Barabási AL.

PLoS Comput Biol. 2012;8(6):e1002531. doi: 10.1371/journal.pcbi.1002531. Epub 2012 Jun 28.

13.

Emergent criticality through adaptive information processing in boolean networks.

Goudarzi A, Teuscher C, Gulbahce N, Rohlf T.

Phys Rev Lett. 2012 Mar 23;108(12):128702. Epub 2012 Mar 23.

PMID:
22540628
14.

MicroRNA-21 integrates pathogenic signaling to control pulmonary hypertension: results of a network bioinformatics approach.

Parikh VN, Jin RC, Rabello S, Gulbahce N, White K, Hale A, Cottrill KA, Shaik RS, Waxman AB, Zhang YY, Maron BA, Hartner JC, Fujiwara Y, Orkin SH, Haley KJ, Barabási AL, Loscalzo J, Chan SY.

Circulation. 2012 Mar 27;125(12):1520-32. doi: 10.1161/CIRCULATIONAHA.111.060269. Epub 2012 Feb 27.

15.

Global landscape of HIV-human protein complexes.

Jäger S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, Stephens M, D'Orso I, Fernandes J, Fahey M, Mahon C, O'Donoghue AJ, Todorovic A, Morris JH, Maltby DA, Alber T, Cagney G, Bushman FD, Young JA, Chanda SK, Sundquist WI, Kortemme T, Hernandez RD, Craik CS, Burlingame A, Sali A, Frankel AD, Krogan NJ.

Nature. 2011 Dec 21;481(7381):365-70. doi: 10.1038/nature10719.

16.

Network-based methods for human disease gene prediction.

Wang X, Gulbahce N, Yu H.

Brief Funct Genomics. 2011 Sep;10(5):280-93. doi: 10.1093/bfgp/elr024. Epub 2011 Jul 15. Review.

PMID:
21764832
17.

Network medicine: a network-based approach to human disease.

Barabási AL, Gulbahce N, Loscalzo J.

Nat Rev Genet. 2011 Jan;12(1):56-68. doi: 10.1038/nrg2918. Review.

18.

Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia.

Kahle JJ, Gulbahce N, Shaw CA, Lim J, Hill DE, Barabási AL, Zoghbi HY.

Hum Mol Genet. 2011 Feb 1;20(3):510-27. doi: 10.1093/hmg/ddq496. Epub 2010 Nov 15.

19.

Purification and characterization of HIV-human protein complexes.

Jäger S, Gulbahce N, Cimermancic P, Kane J, He N, Chou S, D'Orso I, Fernandes J, Jang G, Frankel AD, Alber T, Zhou Q, Krogan NJ.

Methods. 2011 Jan;53(1):13-9. doi: 10.1016/j.ymeth.2010.08.007. Epub 2010 Aug 12. Review.

20.

Mapping the evolution of scientific fields.

Herrera M, Roberts DC, Gulbahce N.

PLoS One. 2010 May 4;5(5):e10355. doi: 10.1371/journal.pone.0010355.

21.

Spontaneous reaction silencing in metabolic optimization.

Nishikawa T, Gulbahce N, Motter AE.

PLoS Comput Biol. 2008 Dec;4(12):e1000236. doi: 10.1371/journal.pcbi.1000236. Epub 2008 Dec 5.

22.

The art of community detection.

Gulbahce N, Lehmann S.

Bioessays. 2008 Oct;30(10):934-8. doi: 10.1002/bies.20820.

PMID:
18800363
23.

Local structure of directed networks.

Bianconi G, Gulbahce N, Motter AE.

Phys Rev Lett. 2008 Mar 21;100(11):118701. Epub 2008 Mar 20.

PMID:
18517837
24.

Predicting synthetic rescues in metabolic networks.

Motter AE, Gulbahce N, Almaas E, Barabási AL.

Mol Syst Biol. 2008;4:168. doi: 10.1038/msb.2008.1. Epub 2008 Feb 12.

25.

Damage spreading and criticality in finite random dynamical networks.

Rohlf T, Gulbahce N, Teuscher C.

Phys Rev Lett. 2007 Dec 14;99(24):248701. Epub 2007 Dec 13.

PMID:
18233497
26.

Optimization in gradient networks.

Gulbahce N.

Chaos. 2007 Jun;17(2):026105.

PMID:
17614692
27.

Structure of fluctuations near mean-field critical points and spinodals and its implication for physical processes.

Klein W, Gould H, Gulbahce N, Rundle JB, Tiampo K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031114. Epub 2007 Mar 22.

PMID:
17500675
28.

Statistical mechanics of histories: a cluster Monte Carlo algorithm.

Gulbahce N, Alexander FJ, Johnson G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Feb;73(2 Pt 2):026701. Epub 2006 Feb 6.

PMID:
16605477
29.

Zeros of the partition function and pseudospinodals in long-range Ising models.

Gulbahce N, Gould H, Klein W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Mar;69(3 Pt 2):036119. Epub 2004 Mar 31.

PMID:
15089373

Supplemental Content

Loading ...
Support Center