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Items: 48

1.

Modeling Hybridization Kinetics of Gene Probes in a DNA Biochip Using FEMLAB.

Munir A, Waseem H, Williams MR, Stedtfeld RD, Gulari E, Tiedje JM, Hashsham SA.

Microarrays (Basel). 2017 May 29;6(2). pii: E9. doi: 10.3390/microarrays6020009.

2.

Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.

Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2017 Aug;139:15-21. doi: 10.1016/j.mimet.2017.04.009. Epub 2017 Apr 23.

3.

Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens.

Stedtfeld RD, Liu YC, Stedtfeld TM, Kostic T, Kronlein M, Srivannavit O, Khalife WT, Tiedje JM, Gulari E, Hughes M, Etchebarne B, Hashsham SA.

Biomed Microdevices. 2015 Oct;17(5):89. doi: 10.1007/s10544-015-9994-1.

4.

Secretory expression and characterization of two hemicellulases, xylanase, and β-xylosidase, isolated from Bacillus subtilis M015.

Banka AL, Guralp SA, Gulari E.

Appl Biochem Biotechnol. 2014 Dec;174(8):2702-10. doi: 10.1007/s12010-014-1219-1. Epub 2014 Sep 16.

5.

Methods for the preparation of large quantities of complex single-stranded oligonucleotide libraries.

Murgha YE, Rouillard JM, Gulari E.

PLoS One. 2014 Apr 14;9(4):e94752. doi: 10.1371/journal.pone.0094752. eCollection 2014.

6.

Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries.

Murgha Y, Beliveau B, Semrau K, Schwartz D, Wu CT, Gulari E, Rouillard JM.

Biotechniques. 2015 Jun 1;58(6):301-7. doi: 10.2144/000114298. eCollection 2015 Jun.

7.

Detection and characterization of human pathogenic viruses circulating in community wastewater using multi target microarrays and polymerase chain reaction.

Wong MV, Hashsham SA, Gulari E, Rouillard JM, Aw TG, Rose JB.

J Water Health. 2013 Dec;11(4):659-70. doi: 10.2166/wh.2013.322.

PMID:
24334840
8.

A conjugated polymer-peptide hybrid system for prostate-specific antigen (PSA) detection.

Lee K, Mandal S, Morry J, Srivannavit O, Gulari E, Kim J.

Chem Commun (Camb). 2013 May 18;49(40):4528-30. doi: 10.1039/c3cc00280b. Epub 2013 Apr 11.

PMID:
23577344
9.

From design to screening: a new antimicrobial peptide discovery pipeline.

Guralp SA, Murgha YE, Rouillard JM, Gulari E.

PLoS One. 2013;8(3):e59305. doi: 10.1371/journal.pone.0059305. Epub 2013 Mar 19.

10.

Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves.

Baushke SW, Stedtfeld RD, Tourlousse DM, Ahmad F, Wick LM, Gulari E, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2012 Jul;90(1):29-35. doi: 10.1016/j.mimet.2012.04.003. Epub 2012 Apr 17.

11.

Gene-Z: a device for point of care genetic testing using a smartphone.

Stedtfeld RD, Tourlousse DM, Seyrig G, Stedtfeld TM, Kronlein M, Price S, Ahmad F, Gulari E, Tiedje JM, Hashsham SA.

Lab Chip. 2012 Apr 21;12(8):1454-62. doi: 10.1039/c2lc21226a. Epub 2012 Feb 29.

PMID:
22374412
12.

Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli.

Minty JJ, Lesnefsky AA, Lin F, Chen Y, Zaroff TA, Veloso AB, Xie B, McConnell CA, Ward RJ, Schwartz DR, Rouillard JM, Gao Y, Gulari E, Lin XN.

Microb Cell Fact. 2011 Mar 25;10:18. doi: 10.1186/1475-2859-10-18.

13.

Microfluidic Reactor Array Device for Massively Parallel In-situ Synthesis of Oligonucleotides.

Srivannavit O, Gulari M, Hua Z, Gao X, Zhou X, Hong A, Zhou T, Gulari E.

Sens Actuators B Chem. 2009 Jul;140(2):473-481.

14.

High-throughput screening of nanoparticle catalysts made by flame spray pyrolysis as hydrocarbon/NO oxidation catalysts.

Weidenhof B, Reiser M, Stöwe K, Maier WF, Kim M, Azurdia J, Gulari E, Seker E, Barks A, Laine RM.

J Am Chem Soc. 2009 Jul 8;131(26):9207-19. doi: 10.1021/ja809134s.

PMID:
19566095
15.

OligoArrayDb: pangenomic oligonucleotide microarray probe sets database.

Rouillard JM, Gulari E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D938-41. doi: 10.1093/nar/gkn761. Epub 2008 Oct 23.

16.

Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platform.

Stedtfeld RD, Baushke SW, Tourlousse DM, Miller SM, Stedtfeld TM, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2008 Jun;74(12):3831-8. doi: 10.1128/AEM.02743-07. Epub 2008 Apr 18.

17.

A light writable microfluidic "flash memory": optically addressed actuator array with latched operation for microfluidic applications.

Hua Z, Pal R, Srivannavit O, Burns MA, Gulari E.

Lab Chip. 2008 Mar;8(3):488-91. doi: 10.1039/b712983a. Epub 2008 Jan 14.

PMID:
18305870
18.

In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.

Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2008 Apr;74(7):2200-9. doi: 10.1128/AEM.01962-07. Epub 2008 Feb 1.

19.

microParaflo biochip for nucleic acid and protein analysis.

Zhu Q, Hong A, Sheng N, Zhang X, Matejko A, Jun KY, Srivannavit O, Gulari E, Gao X, Zhou X.

Methods Mol Biol. 2007;382:287-312.

PMID:
18220239
20.

Cytophobic surface modification of microfluidic arrays for in situ parallel peptide synthesis and cell adhesion assays.

Mandal S, Rouillard JM, Srivannavit O, Gulari E.

Biotechnol Prog. 2007 Jul-Aug;23(4):972-8. Epub 2007 Jul 3.

21.

Colloids with high-definition surface structures.

Chen HY, Rouillard JM, Gulari E, Lahann J.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11173-8. Epub 2007 Jun 25.

22.

Signal-amplifying conjugated polymer-DNA hybrid chips.

Lee K, Rouillard JM, Pham T, Gulari E, Kim J.

Angew Chem Int Ed Engl. 2007;46(25):4667-70. No abstract available.

23.

Simulation and visualization of flow pattern in microarrays for liquid phase oligonucleotide and peptide synthesis.

O-Charoen S, Srivannavit O, Gulari E.

Biotechnol Prog. 2007 May-Jun;23(3):755-61. Epub 2007 May 5.

24.

Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays.

Stedtfeld RD, Wick LM, Baushke SW, Tourlousse DM, Herzog AB, Xia Y, Rouillard JM, Klappenbach JA, Cole JR, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2007 Jan;73(2):380-9. Epub 2006 Nov 17.

25.

An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes.

Le Brigand K, Russell R, Moreilhon C, Rouillard JM, Jost B, Amiot F, Magnone V, Bole-Feysot C, Rostagno P, Virolle V, Defamie V, Dessen P, Williams G, Lyons P, Rios G, Mari B, Gulari E, Kastner P, Gidrol X, Freeman TC, Barbry P.

Nucleic Acids Res. 2006 Jul 19;34(12):e87.

26.
27.

On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes.

Wick LM, Rouillard JM, Whittam TS, Gulari E, Tiedje JM, Hashsham SA.

Nucleic Acids Res. 2006 Feb 13;34(3):e26.

28.

Layer-by-layer assembly of nacre-like nanostructured composites with antimicrobial properties.

Podsiadlo P, Paternel S, Rouillard JM, Zhang Z, Lee J, Lee JW, Gulari E, Kotov NA.

Langmuir. 2005 Dec 6;21(25):11915-21.

PMID:
16316133
29.

Accurate multiplex gene synthesis from programmable DNA microchips.

Tian J, Gong H, Sheng N, Zhou X, Gulari E, Gao X, Church G.

Nature. 2004 Dec 23;432(7020):1050-4.

30.

Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs.

Hashsham SA, Wick LM, Rouillard JM, Gulari E, Tiedje JM.

Biosens Bioelectron. 2004 Nov 1;20(4):668-83. Review.

PMID:
15522582
31.

Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences.

Zhou X, Cai S, Hong A, You Q, Yu P, Sheng N, Srivannavit O, Muranjan S, Rouillard JM, Xia Y, Zhang X, Xiang Q, Ganesh R, Zhu Q, Matejko A, Gulari E, Gao X.

Nucleic Acids Res. 2004 Oct 11;32(18):5409-17. Print 2004.

32.

High density peptide microarrays. In situ synthesis and applications.

Gao X, Pellois JP, Na Y, Kim Y, Gulari E, Zhou X.

Mol Divers. 2004;8(3):177-87.

33.

Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM.

Appl Environ Microbiol. 2004 Aug;70(8):4961-70.

34.

Gene2Oligo: oligonucleotide design for in vitro gene synthesis.

Rouillard JM, Lee W, Truan G, Gao X, Zhou X, Gulari E.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W176-80.

35.

In situ synthesis of oligonucleotide microarrays.

Gao X, Gulari E, Zhou X.

Biopolymers. 2004 Apr 5;73(5):579-96. Review.

PMID:
15048782
36.

Light directed massively parallel on-chip synthesis of peptide arrays with t-Boc chemistry.

Gao X, Zhou X, Gulari E.

Proteomics. 2003 Nov;3(11):2135-41.

PMID:
14595812
37.

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach.

Rouillard JM, Zuker M, Gulari E.

Nucleic Acids Res. 2003 Jun 15;31(12):3057-62.

38.

Individually addressable parallel peptide synthesis on microchips.

Pellois JP, Zhou X, Srivannavit O, Zhou T, Gulari E, Gao X.

Nat Biotechnol. 2002 Sep;20(9):922-6. Epub 2002 Jul 22.

PMID:
12134169
39.

Light-directed simultaneous synthesis of oligopeptides on microarray substrate using a photogenerated acid.

Komolpis K, Srivannavit O, Gulari E.

Biotechnol Prog. 2002 May-Jun;18(3):641-6.

PMID:
12052085
40.

A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids.

Gao X, LeProust E, Zhang H, Srivannavit O, Gulari E, Yu P, Nishiguchi C, Xiang Q, Zhou X.

Nucleic Acids Res. 2001 Nov 15;29(22):4744-50.

41.

Digital light-directed synthesis. A microarray platform that permits rapid reaction optimization on a combinatorial basis.

LeProust E, Pellois JP, Yu P, Zhang H, Gao X, Srivannavit O, Gulari E, Zhou X.

J Comb Chem. 2000 Jul-Aug;2(4):349-54.

PMID:
10891102
42.

Design engineering of a bioartificial renal tubule cell therapy device.

Nikolovski J, Gulari E, Humes HD.

Cell Transplant. 1999 Jul-Aug;8(4):351-64.

PMID:
10478715
43.
44.

Formation of polyol-fatty acid esters by lipases in reverse micellar media.

Hayes DG, Gulari E.

Biotechnol Bioeng. 1992 Jun 5;40(1):110-8.

45.
46.

Esterification reactions of lipase in reverse micelles.

Hayes DG, Gulari E.

Biotechnol Bioeng. 1990 Apr 5;35(8):793-801.

47.

Noise-induced bistability in a Monte Carlo surface-reaction model.

Fichthorn K, Gulari E, Ziff R.

Phys Rev Lett. 1989 Oct 2;63(14):1527-1530. No abstract available.

PMID:
10040595
48.

Kinetic phase transitions in an irreversible surface-reaction model.

Ziff RM, Gulari E, Barshad Y.

Phys Rev Lett. 1986 Jun 16;56(24):2553-2556. No abstract available.

PMID:
10033028

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