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Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development.

Stagaman K, Cepon-Robins TJ, Liebert MA, Gildner TE, Urlacher SS, Madimenos FC, Guillemin K, Snodgrass JJ, Sugiyama LS, Bohannan BJM.

mSystems. 2018 Feb 27;3(1). pii: e00122-17. doi: 10.1128/mSystems.00122-17. eCollection 2018 Jan-Feb.


Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling.

Troll JV, Hamilton MK, Abel ML, Ganz J, Bates JM, Stephens WZ, Melancon E, van der Vaart M, Meijer AH, Distel M, Eisen JS, Guillemin K.

Development. 2018 Feb 23;145(4). pii: dev155317. doi: 10.1242/dev.155317.


The bacterial virulence factor CagA induces microbial dysbiosis that contributes to excessive epithelial cell proliferation in the Drosophila gut.

Jones TA, Hernandez DZ, Wong ZC, Wandler AM, Guillemin K.

PLoS Pathog. 2017 Oct 19;13(10):e1006631. doi: 10.1371/journal.ppat.1006631. eCollection 2017 Oct.


Transmission of a common intestinal neoplasm in zebrafish by cohabitation.

Burns AR, Watral V, Sichel S, Spagnoli S, Banse AV, Mittge E, Sharpton TJ, Guillemin K, Kent ML.

J Fish Dis. 2018 Apr;41(4):569-579. doi: 10.1111/jfd.12743. Epub 2017 Oct 11.


Interhost dispersal alters microbiome assembly and can overwhelm host innate immunity in an experimental zebrafish model.

Burns AR, Miller E, Agarwal M, Rolig AS, Milligan-Myhre K, Seredick S, Guillemin K, Bohannan BJM.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11181-11186. doi: 10.1073/pnas.1702511114. Epub 2017 Oct 2.


The scales of the zebrafish: host-microbiota interactions from proteins to populations.

Burns AR, Guillemin K.

Curr Opin Microbiol. 2017 Aug;38:137-141. doi: 10.1016/j.mib.2017.05.011. Epub 2017 Jun 12. Review.


Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut.

Small CM, Milligan-Myhre K, Bassham S, Guillemin K, Cresko WA.

Genome Biol Evol. 2017 Mar 1;9(3):504-520. doi: 10.1093/gbe/evx014.


The role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish.

Stagaman K, Burns AR, Guillemin K, Bohannan BJ.

ISME J. 2017 Jul;11(7):1630-1639. doi: 10.1038/ismej.2017.28. Epub 2017 Mar 17.


The enteric nervous system promotes intestinal health by constraining microbiota composition.

Rolig AS, Mittge EK, Ganz J, Troll JV, Melancon E, Wiles TJ, Alligood K, Stephens WZ, Eisen JS, Guillemin K.

PLoS Biol. 2017 Feb 16;15(2):e2000689. doi: 10.1371/journal.pbio.2000689. eCollection 2017 Feb.


Best practices for germ-free derivation and gnotobiotic zebrafish husbandry.

Melancon E, Gomez De La Torre Canny S, Sichel S, Kelly M, Wiles TJ, Rawls JF, Eisen JS, Guillemin K.

Methods Cell Biol. 2017;138:61-100. doi: 10.1016/bs.mcb.2016.11.005. Review.


Multiple Acid Sensors Control Helicobacter pylori Colonization of the Stomach.

Huang JY, Goers Sweeney E, Guillemin K, Amieva MR.

PLoS Pathog. 2017 Jan 19;13(1):e1006118. doi: 10.1371/journal.ppat.1006118. eCollection 2017 Jan.


A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development.

Hill JH, Franzosa EA, Huttenhower C, Guillemin K.

Elife. 2016 Dec 13;5. pii: e20145. doi: 10.7554/eLife.20145.


Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota.

Wiles TJ, Jemielita M, Baker RP, Schlomann BH, Logan SL, Ganz J, Melancon E, Eisen JS, Guillemin K, Parthasarathy R.

PLoS Biol. 2016 Jul 26;14(7):e1002517. doi: 10.1371/journal.pbio.1002517. eCollection 2016 Jul.


H. pylori's BabA Embraces Change.

Sweeney EG, Guillemin K.

Cell Host Microbe. 2016 Jan 13;19(1):5-7. doi: 10.1016/j.chom.2015.12.013.


Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations.

Milligan-Myhre K, Small CM, Mittge EK, Agarwal M, Currey M, Cresko WA, Guillemin K.

Dis Model Mech. 2016 Feb;9(2):187-98. doi: 10.1242/dmm.021881. Epub 2015 Dec 17.


Individual Members of the Microbiota Disproportionately Modulate Host Innate Immune Responses.

Rolig AS, Parthasarathy R, Burns AR, Bohannan BJ, Guillemin K.

Cell Host Microbe. 2015 Nov 11;18(5):613-20. doi: 10.1016/j.chom.2015.10.009.


Identification of Population Bottlenecks and Colonization Factors during Assembly of Bacterial Communities within the Zebrafish Intestine.

Stephens WZ, Wiles TJ, Martinez ES, Jemielita M, Burns AR, Parthasarathy R, Bohannan BJ, Guillemin K.

MBio. 2015 Oct 27;6(6):e01163-15. doi: 10.1128/mBio.01163-15.


Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut.

Wong S, Stephens WZ, Burns AR, Stagaman K, David LA, Bohannan BJ, Guillemin K, Rawls JF.

MBio. 2015 Sep 29;6(5):e00687-15. doi: 10.1128/mBio.00687-15.


The composition of the zebrafish intestinal microbial community varies across development.

Stephens WZ, Burns AR, Stagaman K, Wong S, Rawls JF, Guillemin K, Bohannan BJ.

ISME J. 2016 Mar;10(3):644-54. doi: 10.1038/ismej.2015.140. Epub 2015 Sep 4.


Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development.

Burns AR, Stephens WZ, Stagaman K, Wong S, Rawls JF, Guillemin K, Bohannan BJ.

ISME J. 2016 Mar;10(3):655-64. doi: 10.1038/ismej.2015.142. Epub 2015 Aug 21.


Chemodetection and Destruction of Host Urea Allows Helicobacter pylori to Locate the Epithelium.

Huang JY, Sweeney EG, Sigal M, Zhang HC, Remington SJ, Cantrell MA, Kuo CJ, Guillemin K, Amieva MR.

Cell Host Microbe. 2015 Aug 12;18(2):147-56. doi: 10.1016/j.chom.2015.07.002.


Chemorepulsion from the Quorum Signal Autoinducer-2 Promotes Helicobacter pylori Biofilm Dispersal.

Anderson JK, Huang JY, Wreden C, Sweeney EG, Goers J, Remington SJ, Guillemin K.

MBio. 2015 Jul 7;6(4):e00379. doi: 10.1128/mBio.00379-15.


Immigrants in immunology: the benefits of lax borders.

Stagaman K, Martinez ES, Guillemin K.

Trends Immunol. 2015 May;36(5):286-9. doi: 10.1016/ Epub 2015 Apr 9. Review.


Spatial and temporal features of the growth of a bacterial species colonizing the zebrafish gut.

Jemielita M, Taormina MJ, Burns AR, Hampton JS, Rolig AS, Guillemin K, Parthasarathy R.

MBio. 2014 Dec 16;5(6). pii: e01751-14. doi: 10.1128/mBio.01751-14.


Intestinal alkaline phosphatase deficiency leads to lipopolysaccharide desensitization and faster weight gain.

Yang Y, Millán JL, Mecsas J, Guillemin K.

Infect Immun. 2015 Jan;83(1):247-58. doi: 10.1128/IAI.02520-14. Epub 2014 Oct 27.


Tending a complex microbiota requires major immune complexity.

Stagaman K, Guillemin K, Milligan-Myhre K.

Mol Ecol. 2014 Oct;23(19):4679-81. doi: 10.1111/mec.12895.


A twist in the tail.

Guillemin K, Rolig AS.

Elife. 2014 Mar 4;3:e02386. doi: 10.7554/eLife.02386.


Draft Genome Sequence of Aeromonas veronii Hm21, a Symbiotic Isolate from the Medicinal Leech Digestive Tract.

Bomar L, Stephens WZ, Nelson MC, Velle K, Guillemin K, Graf J.

Genome Announc. 2013 Oct 3;1(5). pii: e00800-13. doi: 10.1128/genomeA.00800-13.


A retrospective study of the prevalence and classification of intestinal neoplasia in zebrafish (Danio rerio).

Paquette CE, Kent ML, Buchner C, Tanguay RL, Guillemin K, Mason TJ, Peterson TS.

Zebrafish. 2013 Jun;10(2):228-36. doi: 10.1089/zeb.2012.0828. Epub 2013 Apr 1.


H. pylori virulence factor CagA increases intestinal cell proliferation by Wnt pathway activation in a transgenic zebrafish model.

Neal JT, Peterson TS, Kent ML, Guillemin K.

Dis Model Mech. 2013 May;6(3):802-10. doi: 10.1242/dmm.011163. Epub 2013 Mar 1.


Transgenic expression of the Helicobacter pylori virulence factor CagA promotes apoptosis or tumorigenesis through JNK activation in Drosophila.

Wandler AM, Guillemin K.

PLoS Pathog. 2012;8(10):e1002939. doi: 10.1371/journal.ppat.1002939. Epub 2012 Oct 18.


Dynamic Evolution of the LPS-Detoxifying Enzyme Intestinal Alkaline Phosphatase in Zebrafish and Other Vertebrates.

Yang Y, Wandler AM, Postlethwait JH, Guillemin K.

Front Immunol. 2012 Oct 12;3:314. doi: 10.3389/fimmu.2012.00314. eCollection 2012.


Investigating bacterial-animal symbioses with light sheet microscopy.

Taormina MJ, Jemielita M, Stephens WZ, Burns AR, Troll JV, Parthasarathy R, Guillemin K.

Biol Bull. 2012 Aug;223(1):7-20.


Identification of genetic modifiers of CagA-induced epithelial disruption in Drosophila.

Reid DW, Muyskens JB, Neal JT, Gaddini GW, Cho LY, Wandler AM, Botham CM, Guillemin K.

Front Cell Infect Microbiol. 2012 Mar 13;2:24. doi: 10.3389/fcimb.2012.00024. eCollection 2012.


Structure and proposed mechanism for the pH-sensing Helicobacter pylori chemoreceptor TlpB.

Goers Sweeney E, Henderson JN, Goers J, Wreden C, Hicks KG, Foster JK, Parthasarathy R, Remington SJ, Guillemin K.

Structure. 2012 Jul 3;20(7):1177-88. doi: 10.1016/j.str.2012.04.021. Epub 2012 Jun 14.


Study of host-microbe interactions in zebrafish.

Milligan-Myhre K, Charette JR, Phennicie RT, Stephens WZ, Rawls JF, Guillemin K, Kim CH.

Methods Cell Biol. 2011;105:87-116. doi: 10.1016/B978-0-12-381320-6.00004-7.


A gastric pathogen moves chemotaxis in a new direction.

Sweeney EG, Guillemin K.

MBio. 2011 Sep 20;2(5). pii: e00201-11. doi: 10.1128/mBio.00201-11. Print 2011.


Helicobacter pylori perceives the quorum-sensing molecule AI-2 as a chemorepellent via the chemoreceptor TlpB.

Rader BA, Wreden C, Hicks KG, Sweeney EG, Ottemann KM, Guillemin K.

Microbiology. 2011 Sep;157(Pt 9):2445-55. doi: 10.1099/mic.0.049353-0. Epub 2011 May 20.


Evidence for a core gut microbiota in the zebrafish.

Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K, Rawls JF.

ISME J. 2011 Oct;5(10):1595-608. doi: 10.1038/ismej.2011.38. Epub 2011 Apr 7.


Helicobacter pylori CagA disrupts epithelial patterning by activating myosin light chain.

Muyskens JB, Guillemin K.

PLoS One. 2011 Mar 21;6(3):e17856. doi: 10.1371/journal.pone.0017856.


Epithelial cell proliferation in the developing zebrafish intestine is regulated by the Wnt pathway and microbial signaling via Myd88.

Cheesman SE, Neal JT, Mittge E, Seredick BM, Guillemin K.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4570-7. doi: 10.1073/pnas.1000072107. Epub 2010 Oct 4.


A greasy foothold for Helicobacter pylori.

Wandler AM, Parthasarathy R, Guillemin K.

Cell Host Microbe. 2010 May 20;7(5):338-9. doi: 10.1016/j.chom.2010.05.001.


Helicobacter pylori Genome Plasticity.

Baltrus DA, Blaser MJ, Guillemin K.

Genome Dyn. 2009;6:75-90. doi: 10.1159/000235764. Epub 2009 Aug 19.


The complete genome sequence of Helicobacter pylori strain G27.

Baltrus DA, Amieva MR, Covacci A, Lowe TM, Merrell DS, Ottemann KM, Stein M, Salama NR, Guillemin K.

J Bacteriol. 2009 Jan;191(1):447-8. doi: 10.1128/JB.01416-08. Epub 2008 Oct 24.


A transgenic Drosophila model demonstrates that the Helicobacter pylori CagA protein functions as a eukaryotic Gab adaptor.

Botham CM, Wandler AM, Guillemin K.

PLoS Pathog. 2008 May 16;4(5):e1000064. doi: 10.1371/journal.ppat.1000064.


Bugs inside Bugs: what the fruit fly can teach us about immune and microbial balance in the gut.

Muyskens JB, Guillemin K.

Cell Host Microbe. 2008 Mar 13;3(3):117-8. doi: 10.1016/j.chom.2008.02.011.


Natural transformation increases the rate of adaptation in the human pathogen Helicobacter pylori.

Baltrus DA, Guillemin K, Phillips PC.

Evolution. 2008 Jan;62(1):39-49. Epub 2007 Nov 1.


Early developmental pathology due to cytochrome c oxidase deficiency is revealed by a new zebrafish model.

Baden KN, Murray J, Capaldi RA, Guillemin K.

J Biol Chem. 2007 Nov 30;282(48):34839-49. Epub 2007 Aug 30.


The quorum-sensing molecule autoinducer 2 regulates motility and flagellar morphogenesis in Helicobacter pylori.

Rader BA, Campagna SR, Semmelhack MF, Bassler BL, Guillemin K.

J Bacteriol. 2007 Sep;189(17):6109-17. Epub 2007 Jun 22.

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