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Items: 10


The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.

Guerrero FD, Bendele KG, Ghaffari N, Guhlin J, Gedye KR, Lawrence KE, Dearden PK, Harrop TWR, Heath ACG, Lun Y, Metz RP, Teel P, Perez de Leon A, Biggs PJ, Pomroy WE, Johnson CD, Blood PD, Bellgard SE, Tompkins DM.

Data Brief. 2019 Oct 4;27:104602. doi: 10.1016/j.dib.2019.104602. eCollection 2019 Dec.


Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti.

Epstein B, Abou-Shanab RAI, Shamseldin A, Taylor MR, Guhlin J, Burghardt LT, Nelson M, Sadowsky MJ, Tiffin P.

mSphere. 2018 Oct 24;3(5). pii: e00386-18. doi: 10.1128/mSphere.00386-18.


The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements.

Nelson M, Guhlin J, Epstein B, Tiffin P, Sadowsky MJ.

Microb Genom. 2018 May;4(5). doi: 10.1099/mgen.0.000174. Epub 2018 Apr 19.


Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments.

Burghardt LT, Epstein B, Guhlin J, Nelson MS, Taylor MR, Young ND, Sadowsky MJ, Tiffin P.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):2425-2430. doi: 10.1073/pnas.1714246115. Epub 2018 Feb 16.


ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding.

Guhlin J, Silverstein KAT, Zhou P, Tiffin P, Young ND.

BMC Bioinformatics. 2017 Aug 10;18(1):367. doi: 10.1186/s12859-017-1777-7.


Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism.

Burghardt LT, Guhlin J, Chun CL, Liu J, Sadowsky MJ, Stupar RM, Young ND, Tiffin P.

Mol Ecol. 2017 Nov;26(21):6122-6135. doi: 10.1111/mec.14285. Epub 2017 Sep 5.


Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.

Zhou P, Silverstein KA, Ramaraj T, Guhlin J, Denny R, Liu J, Farmer AD, Steele KP, Stupar RM, Miller JR, Tiffin P, Mudge J, Young ND.

BMC Genomics. 2017 Mar 27;18(1):261. doi: 10.1186/s12864-017-3654-1.


Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation.

Curtin SJ, Tiffin P, Guhlin J, Trujillo DI, Burghart LT, Atkins P, Baltes NJ, Denny R, Voytas DF, Stupar RM, Young ND.

Plant Physiol. 2017 Feb;173(2):921-931. doi: 10.1104/pp.16.01923. Epub 2017 Jan 5.


Draft Genome Sequences of Four Novel Thermal- and Alkaline-Tolerant Egyptian Rhizobium Strains Nodulating Berseem Clover.

Shamseldin A, Nelson MS, Staley C, Guhlin J, Sadowsky MJ.

Genome Announc. 2016 Sep 15;4(5). pii: e00988-16. doi: 10.1128/genomeA.00988-16.


Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application).

Zhou P, Silverstein KA, Gao L, Walton JD, Nallu S, Guhlin J, Young ND.

BMC Bioinformatics. 2013 Nov 20;14:335. doi: 10.1186/1471-2105-14-335.

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