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Items: 23


Landscape genomics provides evidence of climate-associated genetic variation in Mexican populations of Quercus rugosa.

Martins K, Gugger PF, Llanderal-Mendoza J, González-Rodríguez A, Fitz-Gibbon ST, Zhao JL, Rodríguez-Correa H, Oyama K, Sork VL.

Evol Appl. 2018 Aug 31;11(10):1842-1858. doi: 10.1111/eva.12684. eCollection 2018 Dec.


Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus).

Oney-Birol S, Fitz-Gibbon S, Chen JM, Gugger PF, Sork VL.

BMC Genet. 2018 Oct 1;19(1):88. doi: 10.1186/s12863-018-0677-9.


RADseq data reveal ancient, but not pervasive, introgression between Californian tree and scrub oak species (Quercus sect. Quercus: Fagaceae).

Kim BY, Wei X, Fitz-Gibbon S, Lohmueller KE, Ortego J, Gugger PF, Sork VL.

Mol Ecol. 2018 Nov;27(22):4556-4571. doi: 10.1111/mec.14869. Epub 2018 Oct 12.


Dendroecology meets genomics in the common garden: new insights into climate adaptation.

Evans MEK, Gugger PF, Lynch AM, Guiterman CH, Fowler JC, Klesse S, Riordan EC.

New Phytol. 2018 Apr;218(2):401-403. doi: 10.1111/nph.15094. No abstract available.


Investigating the molecular basis for heterophylly in the aquatic plant Potamogeton octandrus (Potamogetonaceae) with comparative transcriptomics.

He D, Guo P, Gugger PF, Guo Y, Liu X, Chen J.

PeerJ. 2018 Feb 28;6:e4448. doi: 10.7717/peerj.4448. eCollection 2018.


Applying landscape genomic tools to forest management and restoration of Hawaiian koa (Acacia koa) in a changing environment.

Gugger PF, Liang CT, Sork VL, Hodgskiss P, Wright JW.

Evol Appl. 2017 Sep 6;11(2):231-242. doi: 10.1111/eva.12534. eCollection 2018 Feb.


Genomic data reveal cryptic lineage diversification and introgression in Californian golden cup oaks (section Protobalanus).

Ortego J, Gugger PF, Sork VL.

New Phytol. 2018 Apr;218(2):804-818. doi: 10.1111/nph.14951. Epub 2017 Dec 23.


Whole-transcriptome response to water stress in a California endemic oak, Quercus lobata.

Gugger PF, Peñaloza-Ramírez JM, Wright JW, Sork VL.

Tree Physiol. 2017 May 1;37(5):632-644. doi: 10.1093/treephys/tpw122.


First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae).

Sork VL, Fitz-Gibbon ST, Puiu D, Crepeau M, Gugger PF, Sherman R, Stevens K, Langley CH, Pellegrini M, Salzberg SL.

G3 (Bethesda). 2016 Nov 8;6(11):3485-3495. doi: 10.1534/g3.116.030411.


Impacts of human-induced environmental disturbances on hybridization between two ecologically differentiated Californian oak species.

Ortego J, Gugger PF, Sork VL.

New Phytol. 2017 Jan;213(2):942-955. doi: 10.1111/nph.14182. Epub 2016 Sep 13.


Evolutionary lessons from California plant phylogeography.

Sork VL, Gugger PF, Chen JM, Werth S.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8064-71. doi: 10.1073/pnas.1602675113.


Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients.

Gugger PF, Fitz-Gibbon S, PellEgrini M, Sork VL.

Mol Ecol. 2016 Apr;25(8):1665-80. doi: 10.1111/mec.13563. Epub 2016 Mar 14.


Association of genetic and phenotypic variability with geography and climate in three southern California oaks.

Riordan EC, Gugger PF, Ortego J, Smith C, Gaddis K, Thompson P, Sork VL.

Am J Bot. 2016 Jan;103(1):73-85. doi: 10.3732/ajb.1500135. Epub 2016 Jan 12.


Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata.

Sork VL, Squire K, Gugger PF, Steele SE, Levy ED, Eckert AJ.

Am J Bot. 2016 Jan;103(1):33-46. doi: 10.3732/ajb.1500162. Epub 2016 Jan 7.


Evolutionary and demographic history of the Californian scrub white oak species complex: an integrative approach.

Ortego J, Noguerales V, Gugger PF, Sork VL.

Mol Ecol. 2015 Dec;24(24):6188-208. doi: 10.1111/mec.13457. Epub 2015 Dec 7.


Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks.

Cokus SJ, Gugger PF, Sork VL.

BMC Genomics. 2015 Jul 28;16:552. doi: 10.1186/s12864-015-1761-4.


Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations.

Platt A, Gugger PF, Pellegrini M, Sork VL.

Mol Ecol. 2015 Aug;24(15):3823-30. doi: 10.1111/mec.13230. Epub 2015 Jun 5.


Climate refugia: joint inference from fossil records, species distribution models and phylogeography.

Gavin DG, Fitzpatrick MC, Gugger PF, Heath KD, Rodríguez-Sánchez F, Dobrowski SZ, Hampe A, Hu FS, Ashcroft MB, Bartlein PJ, Blois JL, Carstens BC, Davis EB, de Lafontaine G, Edwards ME, Fernandez M, Henne PD, Herring EM, Holden ZA, Kong WS, Liu J, Magri D, Matzke NJ, McGlone MS, Saltré F, Stigall AL, Tsai YH, Williams JW.

New Phytol. 2014 Oct;204(1):37-54. doi: 10.1111/nph.12929. Epub 2014 Jul 16. Review.


Influence of late Quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata Née.

Gugger PF, Ikegami M, Sork VL.

Mol Ecol. 2013 Jul;22(13):3598-612. doi: 10.1111/mec.12317.


Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak.

Ortego J, Riordan EC, Gugger PF, Sork VL.

Mol Ecol. 2012 Jul;21(13):3210-23. doi: 10.1111/j.1365-294X.2012.05591.x. Epub 2012 Apr 30.


Southward Pleistocene migration of Douglas-fir into Mexico: phylogeography, ecological niche modeling, and conservation of 'rear edge' populations.

Gugger PF, González-Rodríguez A, Rodríguez-Correa H, Sugita S, Cavender-Bares J.

New Phytol. 2011 Mar;189(4):1185-99. doi: 10.1111/j.1469-8137.2010.03559.x. Epub 2010 Nov 30.


Phylogeography of Douglas-fir based on mitochondrial and chloroplast DNA sequences: testing hypotheses from the fossil record.

Gugger PF, Sugita S, Cavender-Bares J.

Mol Ecol. 2010 May;19(9):1877-97. doi: 10.1111/j.1365-294X.2010.04622.x. Epub 2010 Mar 30.


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