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Items: 34

1.

Development of a CRISPR/Cas9 System for Methylococcus capsulatus In Vivo Gene Editing.

Tapscott T, Guarnieri MT, Henard CA.

Appl Environ Microbiol. 2019 May 16;85(11). pii: e00340-19. doi: 10.1128/AEM.00340-19. Print 2019 Jun 1.

2.

Direct Writing of Tunable Living Inks for Bioprocess Intensification.

Qian F, Zhu C, Knipe JM, Ruelas S, Stolaroff JK, DeOtte JR, Duoss EB, Spadaccini CM, Henard CA, Guarnieri MT, Baker SE.

Nano Lett. 2019 Sep 11;19(9):5829-5835. doi: 10.1021/acs.nanolett.9b00066. Epub 2019 Feb 20.

PMID:
30702295
3.

Down-Selection and Outdoor Evaluation of Novel, Halotolerant Algal Strains for Winter Cultivation.

Dahlin LR, Van Wychen S, Gerken HG, McGowen J, Pienkos PT, Posewitz MC, Guarnieri MT.

Front Plant Sci. 2018 Oct 29;9:1513. doi: 10.3389/fpls.2018.01513. eCollection 2018.

4.

Biogas Biocatalysis: Methanotrophic Bacterial Cultivation, Metabolite Profiling, and Bioconversion to Lactic Acid.

Henard CA, Franklin TG, Youhenna B, But S, Alexander D, Kalyuzhnaya MG, Guarnieri MT.

Front Microbiol. 2018 Oct 31;9:2610. doi: 10.3389/fmicb.2018.02610. eCollection 2018.

5.

Combined Effects of Carbon and Nitrogen Source to Optimize Growth of Proteobacterial Methanotrophs.

Tays C, Guarnieri MT, Sauvageau D, Stein LY.

Front Microbiol. 2018 Sep 25;9:2239. doi: 10.3389/fmicb.2018.02239. eCollection 2018.

6.

Different Behaviors of a Substrate in P450 Decarboxylase and Hydroxylase Reveal Reactivity-Enabling Actors.

Bharadwaj VS, Kim S, Guarnieri MT, Crowley MF.

Sci Rep. 2018 Aug 27;8(1):12826. doi: 10.1038/s41598-018-31237-4.

7.

Leveraging algal omics to reveal potential targets for augmenting TAG accumulation.

Arora N, Pienkos PT, Pruthi V, Poluri KM, Guarnieri MT.

Biotechnol Adv. 2018 Jul - Aug;36(4):1274-1292. doi: 10.1016/j.biotechadv.2018.04.005. Epub 2018 Apr 18. Review.

8.

Genome Sequence of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395.

Guarnieri MT, Levering J, Henard CA, Boore JL, Betenbaugh MJ, Zengler K, Knoshaug EP.

Front Bioeng Biotechnol. 2018 Apr 5;6:37. doi: 10.3389/fbioe.2018.00037. eCollection 2018. No abstract available.

9.

Phosphoproteome of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395, under Nitrogen-Replete and -Deplete Conditions.

Guarnieri MT, Gerritsen AT, Henard CA, Knoshaug EP.

Front Bioeng Biotechnol. 2018 Mar 6;6:19. doi: 10.3389/fbioe.2018.00019. eCollection 2018. No abstract available.

10.

Author Correction: Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach.

Akberdin IR, Thompson M, Hamilton R, Desai N, Alexander D, Henard CA, Guarnieri MT, Kalyuzhnaya MG.

Sci Rep. 2018 Mar 14;8(1):4753. doi: 10.1038/s41598-018-23088-w.

11.

Conversion and assimilation of furfural and 5-(hydroxymethyl)furfural by Pseudomonas putida KT2440.

Guarnieri MT, Ann Franden M, Johnson CW, Beckham GT.

Metab Eng Commun. 2017 Feb 8;4:22-28. doi: 10.1016/j.meteno.2017.02.001. eCollection 2017 Jun.

12.

Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach.

Akberdin IR, Thompson M, Hamilton R, Desai N, Alexander D, Henard CA, Guarnieri MT, Kalyuzhnaya MG.

Sci Rep. 2018 Feb 6;8(1):2512. doi: 10.1038/s41598-018-20574-z. Erratum in: Sci Rep. 2018 Mar 14;8(1):4753.

13.

Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote Chlorella vulgaris.

Zuñiga C, Levering J, Antoniewicz MR, Guarnieri MT, Betenbaugh MJ, Zengler K.

Plant Physiol. 2018 Jan;176(1):450-462. doi: 10.1104/pp.17.00605. Epub 2017 Sep 26.

14.

Metabolic Engineering of Actinobacillus succinogenes Provides Insights into Succinic Acid Biosynthesis.

Guarnieri MT, Chou YC, Salvachúa D, Mohagheghi A, St John PC, Peterson DJ, Bomble YJ, Beckham GT.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00996-17. doi: 10.1128/AEM.00996-17. Print 2017 Sep 1.

15.

Phosphoketolase overexpression increases biomass and lipid yield from methane in an obligate methanotrophic biocatalyst.

Henard CA, Smith HK, Guarnieri MT.

Metab Eng. 2017 May;41:152-158. doi: 10.1016/j.ymben.2017.03.007. Epub 2017 Apr 2.

PMID:
28377275
16.

Mimicking lichens: incorporation of yeast strains together with sucrose-secreting cyanobacteria improves survival, growth, ROS removal, and lipid production in a stable mutualistic co-culture production platform.

Li T, Li CT, Butler K, Hays SG, Guarnieri MT, Oyler GA, Betenbaugh MJ.

Biotechnol Biofuels. 2017 Mar 21;10:55. doi: 10.1186/s13068-017-0736-x. eCollection 2017.

17.

The Chlorella vulgaris S-Nitrosoproteome under Nitrogen-Replete and -Deplete Conditions.

Henard CA, Guarnieri MT, Knoshaug EP.

Front Bioeng Biotechnol. 2017 Jan 17;4:100. doi: 10.3389/fbioe.2016.00100. eCollection 2016. No abstract available.

18.

Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.

Zuñiga C, Li CT, Huelsman T, Levering J, Zielinski DC, McConnell BO, Long CP, Knoshaug EP, Guarnieri MT, Antoniewicz MR, Betenbaugh MJ, Zengler K.

Plant Physiol. 2016 Sep;172(1):589-602. doi: 10.1104/pp.16.00593. Epub 2016 Jul 2.

19.

Simultaneous production of triacylglycerol and high-value carotenoids by the astaxanthin-producing oleaginous green microalga Chlorella zofingiensis.

Liu J, Mao X, Zhou W, Guarnieri MT.

Bioresour Technol. 2016 Aug;214:319-327. doi: 10.1016/j.biortech.2016.04.112. Epub 2016 Apr 26.

PMID:
27152772
20.

Bioconversion of methane to lactate by an obligate methanotrophic bacterium.

Henard CA, Smith H, Dowe N, Kalyuzhnaya MG, Pienkos PT, Guarnieri MT.

Sci Rep. 2016 Feb 23;6:21585. doi: 10.1038/srep21585.

21.

Comparison of biomass and lipid production under ambient carbon dioxide vigorous aeration and 3% carbon dioxide condition among the lead candidate Chlorella strains screened by various photobioreactor scales.

Kobayashi N, Barnes A, Jensen T, Noel E, Andlay G, Rosenberg JN, Betenbaugh MJ, Guarnieri MT, Oyler GA.

Bioresour Technol. 2015 Dec;198:246-55. doi: 10.1016/j.biortech.2015.08.124. Epub 2015 Sep 1.

PMID:
26398668
22.

Phosphoketolase pathway engineering for carbon-efficient biocatalysis.

Henard CA, Freed EF, Guarnieri MT.

Curr Opin Biotechnol. 2015 Dec;36:183-8. doi: 10.1016/j.copbio.2015.08.018. Epub 2015 Sep 8. Review.

PMID:
26360872
23.

Lignin valorization through integrated biological funneling and chemical catalysis.

Linger JG, Vardon DR, Guarnieri MT, Karp EM, Hunsinger GB, Franden MA, Johnson CW, Chupka G, Strathmann TJ, Pienkos PT, Beckham GT.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12013-8. doi: 10.1073/pnas.1410657111. Epub 2014 Aug 4.

24.

Bioconversion of natural gas to liquid fuel: opportunities and challenges.

Fei Q, Guarnieri MT, Tao L, Laurens LM, Dowe N, Pienkos PT.

Biotechnol Adv. 2014 May-Jun;32(3):596-614. doi: 10.1016/j.biotechadv.2014.03.011. Epub 2014 Apr 12. Review.

25.

Algal omics: unlocking bioproduct diversity in algae cell factories.

Guarnieri MT, Pienkos PT.

Photosynth Res. 2015 Mar;123(3):255-63. doi: 10.1007/s11120-014-9989-4. Epub 2014 Mar 14. Review.

PMID:
24627032
26.

De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq.

Yang S, Guarnieri MT, Smolinski S, Ghirardi M, Pienkos PT.

Biotechnol Biofuels. 2013 Aug 23;6(1):118. doi: 10.1186/1754-6834-6-118.

27.

Comparative proteomics lends insight into genotype-specific pathogenicity.

Guarnieri MT.

Proteomics. 2013 Sep;13(17):2544-5. doi: 10.1002/pmic.201300322.

PMID:
23925996
28.

Proteomic analysis of Chlorella vulgaris: potential targets for enhanced lipid accumulation.

Guarnieri MT, Nag A, Yang S, Pienkos PT.

J Proteomics. 2013 Nov 20;93:245-53. doi: 10.1016/j.jprot.2013.05.025. Epub 2013 Jun 5.

PMID:
23748020
29.

Examination of triacylglycerol biosynthetic pathways via de novo transcriptomic and proteomic analyses in an unsequenced microalga.

Guarnieri MT, Nag A, Smolinski SL, Darzins A, Seibert M, Pienkos PT.

PLoS One. 2011;6(10):e25851. doi: 10.1371/journal.pone.0025851. Epub 2011 Oct 17.

30.

A high-throughput TNP-ATP displacement assay for screening inhibitors of ATP-binding in bacterial histidine kinases.

Guarnieri MT, Blagg BS, Zhao R.

Assay Drug Dev Technol. 2011 Apr;9(2):174-83. doi: 10.1089/adt.2010.0289. Epub 2010 Nov 4.

31.

Identical phosphatase mechanisms achieved through distinct modes of binding phosphoprotein substrate.

Pazy Y, Motaleb MA, Guarnieri MT, Charon NW, Zhao R, Silversmith RE.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1924-9. doi: 10.1073/pnas.0911185107. Epub 2010 Jan 14.

32.

The Hsp90 inhibitor radicicol interacts with the ATP-binding pocket of bacterial sensor kinase PhoQ.

Guarnieri MT, Zhang L, Shen J, Zhao R.

J Mol Biol. 2008 May 23;379(1):82-93. doi: 10.1016/j.jmb.2008.03.036. Epub 2008 Mar 26.

PMID:
18440021
33.

Crystal structure of the C-terminal domain of splicing factor Prp8 carrying retinitis pigmentosa mutants.

Zhang L, Shen J, Guarnieri MT, Heroux A, Yang K, Zhao R.

Protein Sci. 2007 Jun;16(6):1024-31. Epub 2007 May 1.

34.

Role of peptide hydrophobicity in the mechanism of action of alpha-helical antimicrobial peptides.

Chen Y, Guarnieri MT, Vasil AI, Vasil ML, Mant CT, Hodges RS.

Antimicrob Agents Chemother. 2007 Apr;51(4):1398-406. Epub 2006 Dec 11.

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