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The Paf1 complex and P-TEFb have reciprocal and antagonist roles in maintaining multipotent neural crest progenitors.

Jurynec MJ, Bai X, Bisgrove BW, Jackson H, Nechiporuk A, Palu RAS, Grunwald HA, Su YC, Hoshijima K, Yost HJ, Zon LI, Grunwald DJ.

Development. 2019 Dec 16;146(24). pii: dev180133. doi: 10.1242/dev.180133.


Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish.

Hoshijima K, Jurynec MJ, Klatt Shaw D, Jacobi AM, Behlke MA, Grunwald DJ.

Dev Cell. 2019 Dec 2;51(5):645-657.e4. doi: 10.1016/j.devcel.2019.10.004. Epub 2019 Nov 7.


The rhg1-a (Rhg1 low-copy) nematode resistance source harbors a copia-family retrotransposon within the Rhg1-encoded α-SNAP gene.

Bayless AM, Zapotocny RW, Han S, Grunwald DJ, Amundson KK, Bent AF.

Plant Direct. 2019 Aug 28;3(8):e00164. doi: 10.1002/pld3.164. eCollection 2019 Aug.


Live-Cell Imaging of mRNP-NPC Interactions in Budding Yeast.

Lari A, Farzam F, Bensidoun P, Oeffinger M, Zenklusen D, Grunwald D, Montpetit B.

Methods Mol Biol. 2019;2038:131-150. doi: 10.1007/978-1-4939-9674-2_9.


Interactions among ryanodine receptor isotypes contribute to muscle fiber type development and function.

Chagovetz AA, Klatt Shaw D, Ritchie E, Hoshijima K, Grunwald DJ.

Dis Model Mech. 2019 Sep 18;13(2). pii: dmm038844. doi: 10.1242/dmm.038844.


Fluorescence Polarization Control for On-Off Switching of Single Molecules at Cryogenic Temperatures.

Hulleman CN, Huisman M, Moerland RJ, Grünwald D, Stallinga S, Rieger B.

Small Methods. 2018 Sep 11;2(9). pii: 1700323. doi: 10.1002/smtd.201700323. Epub 2018 Apr 30.


GABARAPs and LC3s have opposite roles in regulating ULK1 for autophagy induction.

Grunwald DS, Otto NM, Park JM, Song D, Kim DH.

Autophagy. 2020 Apr;16(4):600-614. doi: 10.1080/15548627.2019.1632620. Epub 2019 Jun 28.


Cell cycle- and genomic distance-dependent dynamics of a discrete chromosomal region.

Ma H, Tu LC, Chung YC, Naseri A, Grunwald D, Zhang S, Pederson T.

J Cell Biol. 2019 May 6;218(5):1467-1477. doi: 10.1083/jcb.201807162. Epub 2019 Mar 7.


An automated Bayesian pipeline for rapid analysis of single-molecule binding data.

Smith CS, Jouravleva K, Huisman M, Jolly SM, Zamore PD, Grunwald D.

Nat Commun. 2019 Jan 17;10(1):272. doi: 10.1038/s41467-018-08045-5.


Deconstructing transport-distribution reconstruction in the nuclear-pore complex.

Tu LC, Huisman M, Chung YC, Smith CS, Grunwald D.

Nat Struct Mol Biol. 2018 Dec;25(12):1061-1062. doi: 10.1038/s41594-018-0161-2. Epub 2018 Dec 5. No abstract available.


Impact of optical aberrations on axial position determination by photometry.

Thorsen RØ, Hulleman CN, Hammer M, Grünwald D, Stallinga S, Rieger B.

Nat Methods. 2018 Dec;15(12):989-990. doi: 10.1038/s41592-018-0227-4. No abstract available.


CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging.

Ma H, Tu LC, Naseri A, Chung YC, Grunwald D, Zhang S, Pederson T.

Nat Methods. 2018 Nov;15(11):928-931. doi: 10.1038/s41592-018-0174-0. Epub 2018 Oct 30.


Advanced 3D Analysis and Optimization of Single-Molecule FISH in Drosophila Muscle.

Noma A, Smith CS, Huisman M, Martin RM, Moore MJ, Grunwald D.

Small Methods. 2018 Sep 11;2(9). pii: 1700324. doi: 10.1002/smtd.201700324. Epub 2018 May 27.


Further Defining the 2012 Multi-Society Task Force Guidelines for Surveillance of High-risk Adenomas: Is a 3-Year Interval Needed for All Patients?

Grunwald D, Landau A, Jiang ZG, Liu JJ, Najarian R, Sheth SG.

J Clin Gastroenterol. 2019 Oct;53(9):673-679. doi: 10.1097/MCG.0000000000001097.


A hyperactivating proinflammatory RIPK2 allele associated with early-onset osteoarthritis.

Jurynec MJ, Sawitzke AD, Beals TC, Redd MJ, Stevens J, Otterud B, Leppert MF, Grunwald DJ.

Hum Mol Genet. 2018 Jul 1;27(13):2406. doi: 10.1093/hmg/ddy196. No abstract available.


Intracellular Calcium Mobilization Is Required for Sonic Hedgehog Signaling.

Klatt Shaw D, Gunther D, Jurynec MJ, Chagovetz AA, Ritchie E, Grunwald DJ.

Dev Cell. 2018 May 21;45(4):512-525.e5. doi: 10.1016/j.devcel.2018.04.013. Epub 2018 May 10.


An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans.

Bayless AM, Zapotocny RW, Grunwald DJ, Amundson KK, Diers BW, Bent AF.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4512-E4521. doi: 10.1073/pnas.1717070115. Epub 2018 Apr 25.


A hyperactivating proinflammatory RIPK2 allele associated with early-onset osteoarthritis.

Jurynec MJ, Sawitzke AD, Beals TC, Redd MJ, Stevens J, Otterud B, Leppert MF, Grunwald DJ.

Hum Mol Genet. 2018 Jul 1;27(13):2383-2391. doi: 10.1093/hmg/ddy132. Erratum in: Hum Mol Genet. 2018 Jul 1;27(13):2406.


ULK1 phosphorylates Ser30 of BECN1 in association with ATG14 to stimulate autophagy induction.

Park JM, Seo M, Jung CH, Grunwald D, Stone M, Otto NM, Toso E, Ahn Y, Kyba M, Griffin TJ, Higgins L, Kim DH.

Autophagy. 2018;14(4):584-597. doi: 10.1080/15548627.2017.1422851. Epub 2018 Feb 21.


Diatrack particle tracking software: Review of applications and performance evaluation.

Vallotton P, van Oijen AM, Whitchurch CB, Gelfand V, Yeo L, Tsiavaliaris G, Heinrich S, Dultz E, Weis K, Grünwald D.

Traffic. 2017 Dec;18(12):840-852. doi: 10.1111/tra.12530. Epub 2017 Oct 23. Review.


Down-regulation of NOX2 activity in phagocytes mediated by ATM-kinase dependent phosphorylation.

Beaumel S, Picciocchi A, Debeurme F, Vivès C, Hesse AM, Ferro M, Grunwald D, Stieglitz H, Thepchatri P, Smith SME, Fieschi F, Stasia MJ.

Free Radic Biol Med. 2017 Dec;113:1-15. doi: 10.1016/j.freeradbiomed.2017.09.007. Epub 2017 Sep 13.


tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis.

Morrow ZT, Maxwell AM, Hoshijima K, Talbot JC, Grunwald DJ, Amacher SL.

Dev Dyn. 2017 Oct;246(10):759-769. doi: 10.1002/dvdy.24547. Epub 2017 Aug 30.


Defining Lipoprotein Localisation by Fluorescence Microscopy.

Casabona MG, Robert-Genthon M, Grunwald D, Attrée I.

Methods Mol Biol. 2017;1615:65-74. doi: 10.1007/978-1-4939-7033-9_4.


Pseudomembranous Collagenous Colitis: A Case of Not-so-Microscopic Colitis.

Grunwald D, Mehta M, Sheth SG.

ACG Case Rep J. 2016 Dec 21;3(4):e187. doi: 10.14309/crj.2016.160. eCollection 2016 Aug.


Comparison of Vascular Plugs and Pushable Coils for Variceal Embolization After TIPS.

Sarwar A, Esparaz AM, Tapper EB, Brook OR, Grunwald D, Malik R, Ahmed M.

AJR Am J Roentgenol. 2017 Mar;208(3):650-655. doi: 10.2214/AJR.16.16012. Epub 2016 Dec 13.


An Analysis of Factors Predicting Successful Transition From Pancreatology Abstracts to Full Publications.

Grunwald D, Feuerstein JD, Maier IM, Sheth SG.

Pancreas. 2017 Jan;46(1):131-134.


A National Survey of the Prevalence and Impact of Cytomegalovirus Infection Among Hospitalized Patients With Ulcerative Colitis.

Grossberg LB, Ezaz G, Grunwald D, Cohen J, Falchuk KR, Feuerstein JD.

J Clin Gastroenterol. 2018 Mar;52(3):241-245. doi: 10.1097/MCG.0000000000000736.


The location of obstruction predicts stent occlusion in malignant gastric outlet obstruction.

Grunwald D, Cohen J, Bartley A, Sheridan J, Chuttani R, Sawhney MS, Pleskow DK, Berzin TM, Mizrahi M.

Therap Adv Gastroenterol. 2016 Nov;9(6):815-822. Epub 2016 Sep 12.


Functional Characterization and Rescue of a Deep Intronic Mutation in OCRL Gene Responsible for Lowe Syndrome.

Rendu J, Montjean R, Coutton C, Suri M, Chicanne G, Petiot A, Brocard J, Grunwald D, Pietri Rouxel F, Payrastre B, Lunardi J, Dorseuil O, Marty I, Fauré J.

Hum Mutat. 2017 Feb;38(2):152-159. doi: 10.1002/humu.23139. Epub 2016 Nov 21.


The Effect of Right Colon Retroflexion on Adenoma Detection: A Systematic Review and Meta-analysis.

Cohen J, Grunwald D, Grossberg LB, Sawhney MS.

J Clin Gastroenterol. 2017 Oct;51(9):818-824. doi: 10.1097/MCG.0000000000000695. Review.


CRISPR-Cas9 nuclear dynamics and target recognition in living cells.

Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T.

J Cell Biol. 2016 Aug 29;214(5):529-37. doi: 10.1083/jcb.201604115. Epub 2016 Aug 22.


Precise genome editing by homologous recombination.

Hoshijima K, Jurynec MJ, Grunwald DJ.

Methods Cell Biol. 2016;135:121-47. doi: 10.1016/bs.mcb.2016.04.008. Epub 2016 May 2.


An expanded role for mTORC1 in autophagy.

Kim YM, Park JM, Grunwald D, Kim DH.

Mol Cell Oncol. 2015 Feb 3;3(1):e1010958. doi: 10.1080/23723556.2015.1010958. eCollection 2016 Jan.


Endoscopic Image After Subselective Embolization of a Bleeding Colonic Diverticulum.

Grunwald D, Feuerstein JD.

Am J Gastroenterol. 2016 Jun;111(6):766. doi: 10.1038/ajg.2016.206. No abstract available.


Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow.

Ma H, Tu LC, Naseri A, Huisman M, Zhang S, Grunwald D, Pederson T.

Nat Biotechnol. 2016 May;34(5):528-30. doi: 10.1038/nbt.3526. Epub 2016 Apr 18.


The ULK1 complex mediates MTORC1 signaling to the autophagy initiation machinery via binding and phosphorylating ATG14.

Park JM, Jung CH, Seo M, Otto NM, Grunwald D, Kim KH, Moriarity B, Kim YM, Starker C, Nho RS, Voytas D, Kim DH.

Autophagy. 2016;12(3):547-64. doi: 10.1080/15548627.2016.1140293.


Precise Editing of the Zebrafish Genome Made Simple and Efficient.

Hoshijima K, Jurynec MJ, Grunwald DJ.

Dev Cell. 2016 Mar 21;36(6):654-67. doi: 10.1016/j.devcel.2016.02.015.


Simultaneous measurement of emission color and 3D position of single molecules.

Smith C, Huisman M, Siemons M, Grünwald D, Stallinga S.

Opt Express. 2016 Mar 7;24(5):4996-5013. doi: 10.1364/OE.24.004996.


Deciphering the Structure and Function of Nuclear Pores Using Single-Molecule Fluorescence Approaches.

Musser SM, Grünwald D.

J Mol Biol. 2016 May 22;428(10 Pt A):2091-119. doi: 10.1016/j.jmb.2016.02.023. Epub 2016 Mar 2. Review.


Use of Endoscopy to Strengthen a Diagnosis.

Grunwald D, Najarian R, Feuerstein JD.

Gastroenterology. 2016 Apr;150(4):825-6. doi: 10.1053/j.gastro.2015.11.051. No abstract available.


Structurally distinct Arabidopsis thaliana NLR immune receptors recognize tandem WY domains of an oomycete effector.

Goritschnig S, Steinbrenner AD, Grunwald DJ, Staskawicz BJ.

New Phytol. 2016 May;210(3):984-96. doi: 10.1111/nph.13823. Epub 2016 Jan 4.


HIV-1 RNA genome dimerizes on the plasma membrane in the presence of Gag protein.

Chen J, Rahman SA, Nikolaitchik OA, Grunwald D, Sardo L, Burdick RC, Plisov S, Liang E, Tai S, Pathak VK, Hu WS.

Proc Natl Acad Sci U S A. 2016 Jan 12;113(2):E201-8. doi: 10.1073/pnas.1518572113. Epub 2015 Dec 28.


In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p.

Smith C, Lari A, Derrer CP, Ouwehand A, Rossouw A, Huisman M, Dange T, Hopman M, Joseph A, Zenklusen D, Weis K, Grunwald D, Montpetit B.

J Cell Biol. 2015 Dec 21;211(6):1121-30. doi: 10.1083/jcb.201503135.


Probability-based particle detection that enables threshold-free and robust in vivo single-molecule tracking.

Smith CS, Stallinga S, Lidke KA, Rieger B, Grunwald D.

Mol Biol Cell. 2015 Nov 5;26(22):4057-62. doi: 10.1091/mbc.E15-06-0448. Epub 2015 Sep 30.


Hemodynamic Variation and Intravenous Fluids Administered During ERCP and the Association With Post-ERCP Pancreatitis.

Grunwald D, Wadhwa V, Sawhney MS.

Pancreas. 2016 Feb;45(2):293-7. doi: 10.1097/MPA.0000000000000454.


A 4D view on mRNA.

Smith C, Tu LC, Grunwald D.

Oncotarget. 2015 Oct 6;6(30):28515-6. doi: 10.18632/oncotarget.5121. No abstract available.


Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking.

Smith CS, Preibisch S, Joseph A, Abrahamsson S, Rieger B, Myers E, Singer RH, Grunwald D.

J Cell Biol. 2015 May 25;209(4):609-19. doi: 10.1083/jcb.201411032.


A Standardized Assessment of Functional Disability Predicts 1-year Mortality in Patients Undergoing Transjugular Intrahepatic Portosystemic Shunt for Refractory Ascites.

Grunwald D, Tapper EB, Jiang ZG, Ahmed M, Malik R.

J Clin Gastroenterol. 2016 Jan;50(1):75-9. doi: 10.1097/MCG.0000000000000339.


Optimized Generation of Functional Neutrophils and Macrophages from Patient-Specific Induced Pluripotent Stem Cells: Ex Vivo Models of X(0)-Linked, AR22(0)- and AR47(0)- Chronic Granulomatous Diseases.

Brault J, Goutagny E, Telugu N, Shao K, Baquié M, Satre V, Coutton C, Grunwald D, Brion JP, Barlogis V, Stephan JL, Plantaz D, Hescheler J, Krause KH, Sarić T, Stasia MJ.

Biores Open Access. 2014 Dec 1;3(6):311-26. doi: 10.1089/biores.2014.0045.


Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein.

Chen J, Grunwald D, Sardo L, Galli A, Plisov S, Nikolaitchik OA, Chen D, Lockett S, Larson DR, Pathak VK, Hu WS.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):E5205-13. doi: 10.1073/pnas.1413169111. Epub 2014 Nov 17.

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