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Items: 29

1.

A Pine Enhanced Biochar Does Not Decrease Enteric CH4 Emissions, but Alters the Rumen Microbiota.

Terry SA, Ribeiro GO, Gruninger RJ, Chaves AV, Beauchemin KA, Okine E, McAllister TA.

Front Vet Sci. 2019 Sep 17;6:308. doi: 10.3389/fvets.2019.00308. eCollection 2019.

2.

Invited review: Application of meta-omics to understand the dynamic nature of the rumen microbiome and how it responds to diet in ruminants.

Gruninger RJ, Ribeiro GO, Cameron A, McAllister TA.

Animal. 2019 Sep;13(9):1843-1854. doi: 10.1017/S1751731119000752. Epub 2019 May 7. Review.

PMID:
31062682
3.

Characterization of the rumen and fecal microbiome in bloated and non-bloated cattle grazing alfalfa pastures and subjected to bloat prevention strategies.

Azad E, Derakhshani H, Forster RJ, Gruninger RJ, Acharya S, McAllister TA, Khafipour E.

Sci Rep. 2019 Mar 12;9(1):4272. doi: 10.1038/s41598-019-41017-3.

4.

Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future.

Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Muñoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yáñez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, McAllister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, do Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, McEwan NR, Morrisson S, Mayorga OL, Elliott C, Morgavi DP.

Front Microbiol. 2018 Sep 25;9:2161. doi: 10.3389/fmicb.2018.02161. eCollection 2018. Review.

5.

Effect of humic substances on rumen fermentation, nutrient digestibility, methane emissions, and rumen microbiota in beef heifers1.

Terry SA, Ribeiro GO, Gruninger RJ, Hunerberg M, Ping S, Chaves AV, Burlet J, Beauchemin KA, McAllister TA.

J Anim Sci. 2018 Sep 7;96(9):3863-3877. doi: 10.1093/jas/sky265.

6.

Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates.

Gruninger RJ, Nguyen TTM, Reid ID, Yanke JL, Wang P, Abbott DW, Tsang A, McAllister T.

Front Microbiol. 2018 Jul 16;9:1581. doi: 10.3389/fmicb.2018.01581. eCollection 2018.

7.

Enhanced Surveillance for Coccidioidomycosis, 14 US States, 2016.

Benedict K, Ireland M, Weinberg MP, Gruninger RJ, Weigand J, Chen L, Perez-Lockett K, Bledsoe C, Denny L, Cibulskas K, Gibbons-Burgener S, Kocharian A, DeBess E, Miller TK, Lepp A, Cronquist L, Warren K, Serrano JA, Loveland C, Turabelidze G, McCotter O, Jackson BR.

Emerg Infect Dis. 2018 Jul;24(8):1444-1452. doi: 10.3201/eid2408.171595.

8.

Isolation of High Quality RNA for Metatranscriptomic Analysis of Lignocellulose Digestion in the Rumen.

Gruninger RJ, Forster RJ, McAllister TA.

Methods Mol Biol. 2018;1775:75-82. doi: 10.1007/978-1-4939-7804-5_7.

PMID:
29876810
9.

A Novel aadA Aminoglycoside Resistance Gene in Bovine and Porcine Pathogens.

Cameron A, Klima CL, Ha R, Gruninger RJ, Zaheer R, McAllister TA.

mSphere. 2018 Feb 28;3(1). pii: e00568-17. doi: 10.1128/mSphere.00568-17. eCollection 2018 Jan-Feb.

10.

Bacterial PhyA protein-tyrosine phosphatase-like myo-inositol phosphatases in complex with the Ins(1,3,4,5)P4 and Ins(1,4,5)P3 second messengers.

Bruder LM, Gruninger RJ, Cleland CP, Mosimann SC.

J Biol Chem. 2017 Oct 20;292(42):17302-17311. doi: 10.1074/jbc.M117.787853. Epub 2017 Aug 27.

11.

Socioeconomic Determinants of Cipro-floxacin-Resistant Shigella Infections in Bangladeshi Children.

Gruninger RJ, Johnson RA, Das SK, Nelson EJ, Spivak ES, Contreras JR, Faruque ASG, Leung DT.

Pathog Immun. 2017;2(1):89-101. doi: 10.20411/pai.v2i1.174. Epub 2017 Mar 25.

12.

Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates.

Jones DR, Uddin MS, Gruninger RJ, Pham TTM, Thomas D, Boraston AB, Briggs J, Pluvinage B, McAllister TA, Forster RJ, Tsang A, Selinger LB, Abbott DW.

J Biol Chem. 2017 Jul 28;292(30):12606-12620. doi: 10.1074/jbc.M117.789008. Epub 2017 Jun 6.

13.

Repeated inoculation of cattle rumen with bison rumen contents alters the rumen microbiome and improves nitrogen digestibility in cattle.

Ribeiro GO, Oss DB, He Z, Gruninger RJ, Elekwachi C, Forster RJ, Yang W, Beauchemin KA, McAllister TA.

Sci Rep. 2017 Apr 28;7(1):1276. doi: 10.1038/s41598-017-01269-3.

14.

Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry.

Gruninger RJ, Tsang A, McAllister TA.

Methods Mol Biol. 2017;1588:299-308. doi: 10.1007/978-1-4939-6899-2_22.

PMID:
28417377
15.

Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics.

Gruninger RJ, Reid I, Forster RJ, Tsang A, McAllister TA.

Methods Mol Biol. 2017;1588:279-298. doi: 10.1007/978-1-4939-6899-2_21.

PMID:
28417376
16.

Immune Responses to an Oral Cholera Vaccine in Internally Displaced Persons in South Sudan.

Iyer AS, Bouhenia M, Rumunu J, Abubakar A, Gruninger RJ, Pita J, Lino RL, Deng LL, Wamala JF, Ryan ET, Martin S, Legros D, Lessler J, Sack DA, Luquero FJ, Leung DT, Azman AS.

Sci Rep. 2016 Oct 24;6:35742. doi: 10.1038/srep35742.

17.

Bacterial and Archaeal Diversity in the Gastrointestinal Tract of the North American Beaver (Castor canadensis).

Gruninger RJ, McAllister TA, Forster RJ.

PLoS One. 2016 May 26;11(5):e0156457. doi: 10.1371/journal.pone.0156457. eCollection 2016.

18.

Contributions of a unique β-clamp to substrate recognition illuminates the molecular basis of exolysis in ferulic acid esterases.

Gruninger RJ, Cote C, McAllister TA, Abbott DW.

Biochem J. 2016 Apr 1;473(7):839-49. doi: 10.1042/BJ20151153.

PMID:
27026397
19.

Structure and mechanism of Staphylococcus aureus TarM, the wall teichoic acid α-glycosyltransferase.

Sobhanifar S, Worrall LJ, Gruninger RJ, Wasney GA, Blaukopf M, Baumann L, Lameignere E, Solomonson M, Brown ED, Withers SG, Strynadka NC.

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):E576-85. doi: 10.1073/pnas.1418084112. Epub 2015 Jan 26.

20.

Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential.

Gruninger RJ, Puniya AK, Callaghan TM, Edwards JE, Youssef N, Dagar SS, Fliegerova K, Griffith GW, Forster R, Tsang A, McAllister T, Elshahed MS.

FEMS Microbiol Ecol. 2014 Oct;90(1):1-17. doi: 10.1111/1574-6941.12383. Epub 2014 Aug 11. Review.

21.

Structural and biochemical analysis of a unique phosphatase from Bdellovibrio bacteriovorus reveals its structural and functional relationship with the protein tyrosine phosphatase class of phytase.

Gruninger RJ, Thibault J, Capeness MJ, Till R, Mosimann SC, Sockett RE, Selinger BL, Lovering AL.

PLoS One. 2014 Apr 9;9(4):e94403. doi: 10.1371/journal.pone.0094403. eCollection 2014.

22.

Diversity of rumen bacteria in canadian cervids.

Gruninger RJ, Sensen CW, McAllister TA, Forster RJ.

PLoS One. 2014 Feb 27;9(2):e89682. doi: 10.1371/journal.pone.0089682. eCollection 2014.

23.

Biochemical and kinetic characterization of the multifunctional β-glucosidase/β-xylosidase/α-arabinosidase, Bgxa1.

Gruninger RJ, Gong X, Forster RJ, McAllister TA.

Appl Microbiol Biotechnol. 2014 Apr;98(7):3003-12. doi: 10.1007/s00253-013-5191-4. Epub 2013 Aug 31.

PMID:
23995226
24.

Structure of the mycosin-1 protease from the mycobacterial ESX-1 protein type VII secretion system.

Solomonson M, Huesgen PF, Wasney GA, Watanabe N, Gruninger RJ, Prehna G, Overall CM, Strynadka NC.

J Biol Chem. 2013 Jun 14;288(24):17782-90. doi: 10.1074/jbc.M113.462036. Epub 2013 Apr 25.

25.

Cloning and identification of novel hydrolase genes from a dairy cow rumen metagenomic library and characterization of a cellulase gene.

Gong X, Gruninger RJ, Qi M, Paterson L, Forster RJ, Teather RM, McAllister TA.

BMC Res Notes. 2012 Oct 13;5:566. doi: 10.1186/1756-0500-5-566.

26.

Substrate binding in protein-tyrosine phosphatase-like inositol polyphosphatases.

Gruninger RJ, Dobing S, Smith AD, Bruder LM, Selinger LB, Wieden HJ, Mosimann SC.

J Biol Chem. 2012 Mar 23;287(13):9722-30. doi: 10.1074/jbc.M111.309872. Epub 2011 Dec 2.

27.

Structural analysis of a multifunctional, tandemly repeated inositol polyphosphatase.

Gruninger RJ, Selinger LB, Mosimann SC.

J Mol Biol. 2009 Sep 11;392(1):75-86. doi: 10.1016/j.jmb.2009.05.079. Epub 2009 Jun 3.

PMID:
19500593
28.

Effect of ionic strength and oxidation on the P-loop conformation of the protein tyrosine phosphatase-like phytase, PhyAsr.

Gruninger RJ, Selinger LB, Mosimann SC.

FEBS J. 2008 Aug;275(15):3783-92. doi: 10.1111/j.1742-4658.2008.06524.x.

29.

Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase.

Puhl AA, Gruninger RJ, Greiner R, Janzen TW, Mosimann SC, Selinger LB.

Protein Sci. 2007 Jul;16(7):1368-78. Epub 2007 Jun 13.

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