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Items: 1 to 50 of 169

1.

Non-steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells.

Davis CM, Gruebele M.

Chemphyschem. 2018 Jun 6. doi: 10.1002/cphc.201800534. [Epub ahead of print]

PMID:
29877016
2.

STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands.

Nguyen HA, Banerjee P, Nguyen D, Lyding JW, Gruebele M, Jain PK.

J Phys Chem Lett. 2018 Apr 19;9(8):1970-1976. doi: 10.1021/acs.jpclett.8b00502. Epub 2018 Apr 5.

PMID:
29609463
3.

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells.

Davis CM, Gruebele M.

Biochemistry. 2018 Apr 3;57(13):1929-1938. doi: 10.1021/acs.biochem.8b00141. Epub 2018 Mar 23. Review.

PMID:
29546761
4.

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking.

Chen T, Dave K, Gruebele M.

FEBS Lett. 2018 Apr;592(8):1357-1365. doi: 10.1002/1873-3468.13025. Epub 2018 Mar 22.

PMID:
29520756
5.

Orientation-dependent imaging of electronically excited quantum dots.

Nguyen D, Goings JJ, Nguyen HA, Lyding J, Li X, Gruebele M.

J Chem Phys. 2018 Feb 14;148(6):064701. doi: 10.1063/1.5012784.

PMID:
29448801
6.

Plasmonic support-mediated activation of 1 nm platinum clusters for catalysis.

Wieghold S, Nienhaus L, Knoller FL, Schweinberger FF, Shepherd JJ, Lyding JW, Heiz U, Gruebele M, Esch F.

Phys Chem Chem Phys. 2017 Nov 22;19(45):30570-30577. doi: 10.1039/c7cp04882c.

PMID:
29115312
7.

How does solvation in the cell affect protein folding and binding?

Davis CM, Gruebele M, Sukenik S.

Curr Opin Struct Biol. 2018 Feb;48:23-29. doi: 10.1016/j.sbi.2017.09.003. Epub 2017 Oct 13. Review.

PMID:
29035742
8.

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation.

Zanetti-Polzi L, Davis CM, Gruebele M, Dyer RB, Amadei A, Daidone I.

FEBS Lett. 2017 Oct;591(20):3265-3275. doi: 10.1002/1873-3468.12836. Epub 2017 Sep 21.

PMID:
28881468
9.

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape.

Ghaemi Z, Guzman I, Gnutt D, Luthey-Schulten Z, Gruebele M.

J Phys Chem B. 2017 Sep 14;121(36):8437-8446. doi: 10.1021/acs.jpcb.7b04318. Epub 2017 Aug 31.

10.

The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

Chao SH, Schäfer J, Gruebele M.

Biochemistry. 2017 Oct 24;56(42):5671-5678. doi: 10.1021/acs.biochem.7b00215. Epub 2017 Oct 6.

11.

Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Sukenik S, Ren P, Gruebele M.

Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):6776-6781. doi: 10.1073/pnas.1700818114. Epub 2017 Jun 12.

12.

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels.

Kisley L, Serrano KA, Guin D, Kong X, Gruebele M, Leckband DE.

ACS Appl Mater Interfaces. 2017 Jul 5;9(26):21606-21617. doi: 10.1021/acsami.7b01371. Epub 2017 Jun 23.

PMID:
28553706
13.

Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution.

Nguyen D, Nguyen HA, Lyding JW, Gruebele M.

ACS Nano. 2017 Jun 27;11(6):6328-6335. doi: 10.1021/acsnano.7b02649. Epub 2017 May 30.

PMID:
28525955
14.

Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact.

Kachlishvili K, Dave K, Gruebele M, Scheraga HA, Maisuradze GG.

J Phys Chem B. 2017 Apr 20;121(15):3276-3284. doi: 10.1021/acs.jpcb.6b07250. Epub 2016 Sep 29.

PMID:
27584585
15.

Mechanical approach to chemical transport.

Kocherginsky N, Gruebele M.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11116-11121. Epub 2016 Sep 19.

16.

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State.

Ghaemi Z, Guzman I, Baek JU, Gruebele M, Luthey-Schulten Z.

J Chem Theory Comput. 2016 Sep 13;12(9):4593-9. doi: 10.1021/acs.jctc.6b00418. Epub 2016 Sep 1.

PMID:
27529183
17.

Globular Protein Folding In Vitro and In Vivo.

Gruebele M, Dave K, Sukenik S.

Annu Rev Biophys. 2016 Jul 5;45:233-51. doi: 10.1146/annurev-biophys-062215-011236.

PMID:
27391927
18.

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics.

Nguyen D, Zhu ZG, Pringle B, Lyding J, Wang WH, Gruebele M.

Phys Chem Chem Phys. 2016 Jun 22;18(25):16856-61. doi: 10.1039/c6cp02654k.

PMID:
27283239
19.

Subcellular modulation of protein VlsE stability and folding kinetics.

Tai J, Dave K, Hahn V, Guzman I, Gruebele M.

FEBS Lett. 2016 May;590(10):1409-16. doi: 10.1002/1873-3468.12193. Epub 2016 May 17.

20.

Disulfide Bridges: Bringing Together Frustrated Structure in a Bioactive Peptide.

Zhang Y, Schulten K, Gruebele M, Bansal PS, Wilson D, Daly NL.

Biophys J. 2016 Apr 26;110(8):1744-1752. doi: 10.1016/j.bpj.2016.03.027.

21.

Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ(6-85) Folding.

Sukenik S, Pogorelov TV, Gruebele M.

J Phys Chem Lett. 2016 Jun 2;7(11):1960-5. doi: 10.1021/acs.jpclett.6b00582. Epub 2016 May 13.

PMID:
27101436
22.

Stochastic Resonance in Protein Folding Dynamics.

Davtyan A, Platkov M, Gruebele M, Papoian GA.

Chemphyschem. 2016 May 4;17(9):1305-13. doi: 10.1002/cphc.201501125. Epub 2016 Apr 28.

PMID:
26992148
23.

ReAsH as a Quantitative Probe of In-Cell Protein Dynamics.

Gelman H, Wirth AJ, Gruebele M.

Biochemistry. 2016 Apr 5;55(13):1968-76. doi: 10.1021/acs.biochem.5b01336. Epub 2016 Mar 18.

PMID:
26959408
24.

Dodine as a transparent protein denaturant for circular dichroism and infrared studies.

Guin D, Sye K, Dave K, Gruebele M.

Protein Sci. 2016 May;25(5):1061-8. doi: 10.1002/pro.2914. Epub 2016 Mar 21.

25.

The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Nonadditive.

Dave K, Gelman H, Thu CT, Guin D, Gruebele M.

J Phys Chem B. 2016 Mar 24;120(11):2878-85. doi: 10.1021/acs.jpcb.5b11915. Epub 2016 Mar 14.

PMID:
26923443
26.

High-Resolution Mapping of the Folding Transition State of a WW Domain.

Dave K, Jäger M, Nguyen H, Kelly JW, Gruebele M.

J Mol Biol. 2016 Apr 24;428(8):1617-36. doi: 10.1016/j.jmb.2016.02.008. Epub 2016 Feb 12.

27.

Environmental Fluctuations and Stochastic Resonance in Protein Folding.

Dave K, Davtyan A, Papoian GA, Gruebele M, Platkov M.

Chemphyschem. 2016 May 4;17(9):1341-8. doi: 10.1002/cphc.201501041. Epub 2016 Jan 20.

28.

Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory.

Nienhaus L, Goings JJ, Nguyen D, Wieghold S, Lyding JW, Li X, Gruebele M.

J Am Chem Soc. 2015 Nov 25;137(46):14743-50. doi: 10.1021/jacs.5b09272. Epub 2015 Nov 13.

PMID:
26518039
29.

Optoelectronic Switching of a Carbon Nanotube Chiral Junction Imaged with Nanometer Spatial Resolution.

Nienhaus L, Wieghold S, Nguyen D, Lyding JW, Scott GE, Gruebele M.

ACS Nano. 2015 Nov 24;9(11):10563-70. doi: 10.1021/acsnano.5b04872. Epub 2015 Sep 15.

PMID:
26348682
30.

Fast-folding proteins under stress.

Dave K, Gruebele M.

Cell Mol Life Sci. 2015 Nov;72(22):4273-85. doi: 10.1007/s00018-015-2002-3. Epub 2015 Aug 1. Review.

31.

The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog.

Girdhar K, Gruebele M, Chemla YR.

PLoS One. 2015 Jul 1;10(7):e0128668. doi: 10.1371/journal.pone.0128668. eCollection 2015.

32.

Sub-nanometer glass surface dynamics induced by illumination.

Nguyen D, Nienhaus L, Haasch RT, Lyding J, Gruebele M.

J Chem Phys. 2015 Jun 21;142(23):234505. doi: 10.1063/1.4922695.

PMID:
26093566
33.

Mapping fast protein folding with multiple-site fluorescent probes.

Prigozhin MB, Chao SH, Sukenik S, Pogorelov TV, Gruebele M.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):7966-71. doi: 10.1073/pnas.1422683112. Epub 2015 Jun 15.

34.

Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.

Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M.

J Am Chem Soc. 2015 Jun 10;137(22):7152-7159. doi: 10.1021/jacs.5b02474. Epub 2015 Jun 2.

35.

Native conformational dynamics of the spliceosomal U1A protein.

Guzman I, Ghaemi Z, Baranger A, Luthey-Schulten Z, Gruebele M.

J Phys Chem B. 2015 Mar 5;119(9):3651-61. doi: 10.1021/jp511760m. Epub 2015 Feb 24.

PMID:
25659967
36.

On readout of vibrational qubits using quantum beats.

Shyshlov D, Berrios E, Gruebele M, Babikov D.

J Chem Phys. 2014 Dec 14;141(22):224306. doi: 10.1063/1.4903055.

PMID:
25494748
37.

Protein dynamics in simulation and experiment.

Gruebele M.

J Am Chem Soc. 2014 Dec 3;136(48):16695-7. doi: 10.1021/ja510614s. No abstract available.

PMID:
25465034
38.

Coupled protein diffusion and folding in the cell.

Guo M, Gelman H, Gruebele M.

PLoS One. 2014 Dec 1;9(12):e113040. doi: 10.1371/journal.pone.0113040. eCollection 2014.

39.

The energy landscape of glassy dynamics on the amorphous hafnium diboride surface.

Nguyen D, Mallek J, Cloud AN, Abelson JR, Girolami GS, Lyding J, Gruebele M.

J Chem Phys. 2014 Nov 28;141(20):204501. doi: 10.1063/1.4901132.

PMID:
25429948
40.

Periodic and stochastic thermal modulation of protein folding kinetics.

Platkov M, Gruebele M.

J Chem Phys. 2014 Jul 21;141(3):035103. doi: 10.1063/1.4887360.

41.

CARPe diem.

Gruebele M.

Biophys J. 2014 Jul 1;107(1):3-4. doi: 10.1016/j.bpj.2014.04.059. No abstract available.

42.

Protein folding dynamics in the cell.

Guzman I, Gruebele M.

J Phys Chem B. 2014 Jul 24;118(29):8459-70. doi: 10.1021/jp501866v. Epub 2014 Jun 17. Review.

43.

Two structural scenarios for protein stabilization by PEG.

Chao SH, Matthews SS, Paxman R, Aksimentiev A, Gruebele M, Price JL.

J Phys Chem B. 2014 Jul 17;118(28):8388-95. doi: 10.1021/jp502234s. Epub 2014 Jun 2.

PMID:
24821319
44.

Fast protein folding kinetics.

Gelman H, Gruebele M.

Q Rev Biophys. 2014 May;47(2):95-142. doi: 10.1017/S003358351400002X. Epub 2014 Mar 18. Review.

45.

Filling up the heme pocket stabilizes apomyoglobin and speeds up its folding.

Goodman JS, Chao SH, Pogorelov TV, Gruebele M.

J Phys Chem B. 2014 Jun 19;118(24):6511-8. doi: 10.1021/jp412459z. Epub 2014 Feb 10.

46.

Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment.

Liu Y, Prigozhin MB, Schulten K, Gruebele M.

J Am Chem Soc. 2014 Mar 19;136(11):4265-72. doi: 10.1021/ja412639u. Epub 2014 Feb 3.

47.

The Gold Nanorod-Biology Interface: From Proteins to Cells to Tissue.

Boulos SP, Prigozhin MB, Liu Y, Wirth AJ, Boppart SA, Gruebele M, Murphy CJ.

Curr Phys Chem. 2013 Apr 1;3(2). doi: 10.2174/1877946811303020002.

48.

Temporal variation of a protein folding energy landscape in the cell.

Wirth AJ, Platkov M, Gruebele M.

J Am Chem Soc. 2013 Dec 26;135(51):19215-21. doi: 10.1021/ja4087165. Epub 2013 Dec 13.

PMID:
24304346
49.

Tribute to Peter G. Wolynes.

Eaton WA, Gruebele M, Lubchenko V, Onuchic JN.

J Phys Chem B. 2013 Oct 24;117(42):12669-71. doi: 10.1021/jp406995z. No abstract available.

PMID:
24152073
50.

Perspective: Reaches of chemical physics in biology.

Gruebele M, Thirumalai D.

J Chem Phys. 2013 Sep 28;139(12):121701. doi: 10.1063/1.4820139.

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