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Items: 1 to 50 of 180

1.

Polymeric "Clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells.

Chen J, Wang J, Li K, Wang Y, Gruebele M, Ferguson AL, Zimmerman SC.

J Am Chem Soc. 2019 Jun 4. doi: 10.1021/jacs.9b04181. [Epub ahead of print]

PMID:
31124359
2.

Dodine as a Kosmo-Chaotropic Agent.

Guin D, Mittal S, Bozymski B, Shukla D, Gruebele M.

J Phys Chem Lett. 2019 May 16;10(10):2600-2605. doi: 10.1021/acs.jpclett.9b00379. Epub 2019 May 8.

PMID:
31026167
3.

Quantifying protein dynamics and stability in a living organism.

Feng R, Gruebele M, Davis CM.

Nat Commun. 2019 Mar 12;10(1):1179. doi: 10.1038/s41467-019-09088-y.

4.

Blue Light Is a Universal Signal for Escherichia coli Chemoreceptors.

Perlova T, Gruebele M, Chemla YR.

J Bacteriol. 2019 May 8;201(11). pii: e00762-18. doi: 10.1128/JB.00762-18. Print 2019 Jun 1.

PMID:
30858302
5.

Fast pressure-jump all-atom simulations and experiments reveal site-specific protein dehydration-folding dynamics.

Prigozhin MB, Zhang Y, Schulten K, Gruebele M, Pogorelov TV.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5356-5361. doi: 10.1073/pnas.1814927116. Epub 2019 Mar 5.

PMID:
30837309
6.

A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy.

Davis CM, Zanetti-Polzi L, Gruebele M, Amadei A, Dyer RB, Daidone I.

Chem Sci. 2018 Oct 3;9(48):9002-9011. doi: 10.1039/c8sc03786h. eCollection 2018 Dec 28.

7.

Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot.

Nguyen D, Wallum A, Nguyen HA, Nguyen NT, Lyding JW, Gruebele M.

ACS Nano. 2019 Feb 26;13(2):1012-1018. doi: 10.1021/acsnano.8b06806. Epub 2019 Jan 29.

PMID:
30605600
8.

Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles.

Yang Z, Loh KY, Chu YT, Feng R, Satyavolu NSR, Xiong M, Nakamata Huynh SM, Hwang K, Li L, Xing H, Zhang X, Chemla YR, Gruebele M, Lu Y.

J Am Chem Soc. 2018 Dec 19;140(50):17656-17665. doi: 10.1021/jacs.8b09867. Epub 2018 Dec 4.

PMID:
30427666
9.

Cell Volume Controls Protein Stability and Compactness of the Unfolded State.

Wang Y, Sukenik S, Davis CM, Gruebele M.

J Phys Chem B. 2018 Dec 13;122(49):11762-11770. doi: 10.1021/acs.jpcb.8b08216. Epub 2018 Oct 26.

PMID:
30289261
10.

Soluble Zwitterionic Poly(sulfobetaine) Destabilizes Proteins.

Kisley L, Serrano KA, Davis CM, Guin D, Murphy EA, Gruebele M, Leckband DE.

Biomacromolecules. 2018 Sep 10;19(9):3894-3901. doi: 10.1021/acs.biomac.8b01120. Epub 2018 Aug 17.

PMID:
30064224
11.

In-Cell Titration of Small Solutes Controls Protein Stability and Aggregation.

Sukenik S, Salam M, Wang Y, Gruebele M.

J Am Chem Soc. 2018 Aug 22;140(33):10497-10503. doi: 10.1021/jacs.8b04809. Epub 2018 Aug 10.

PMID:
30044620
12.

Non-Steric Interactions Predict the Trend and Steric Interactions the Offset of Protein Stability in Cells.

Davis CM, Gruebele M.

Chemphyschem. 2018 Sep 18;19(18):2290-2294. doi: 10.1002/cphc.201800534. Epub 2018 Jun 21.

PMID:
29877016
13.

STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands.

Nguyen HA, Banerjee P, Nguyen D, Lyding JW, Gruebele M, Jain PK.

J Phys Chem Lett. 2018 Apr 19;9(8):1970-1976. doi: 10.1021/acs.jpclett.8b00502. Epub 2018 Apr 5.

PMID:
29609463
14.

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells.

Davis CM, Gruebele M.

Biochemistry. 2018 Apr 3;57(13):1929-1938. doi: 10.1021/acs.biochem.8b00141. Epub 2018 Mar 23. Review.

PMID:
29546761
15.

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking.

Chen T, Dave K, Gruebele M.

FEBS Lett. 2018 Apr;592(8):1357-1365. doi: 10.1002/1873-3468.13025. Epub 2018 Mar 22.

16.

Orientation-dependent imaging of electronically excited quantum dots.

Nguyen D, Goings JJ, Nguyen HA, Lyding J, Li X, Gruebele M.

J Chem Phys. 2018 Feb 14;148(6):064701. doi: 10.1063/1.5012784.

PMID:
29448801
17.

Plasmonic support-mediated activation of 1 nm platinum clusters for catalysis.

Wieghold S, Nienhaus L, Knoller FL, Schweinberger FF, Shepherd JJ, Lyding JW, Heiz U, Gruebele M, Esch F.

Phys Chem Chem Phys. 2017 Nov 22;19(45):30570-30577. doi: 10.1039/c7cp04882c.

PMID:
29115312
18.

How does solvation in the cell affect protein folding and binding?

Davis CM, Gruebele M, Sukenik S.

Curr Opin Struct Biol. 2018 Feb;48:23-29. doi: 10.1016/j.sbi.2017.09.003. Epub 2017 Oct 13. Review.

PMID:
29035742
19.

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation.

Zanetti-Polzi L, Davis CM, Gruebele M, Dyer RB, Amadei A, Daidone I.

FEBS Lett. 2017 Oct;591(20):3265-3275. doi: 10.1002/1873-3468.12836. Epub 2017 Sep 21.

20.

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape.

Ghaemi Z, Guzman I, Gnutt D, Luthey-Schulten Z, Gruebele M.

J Phys Chem B. 2017 Sep 14;121(36):8437-8446. doi: 10.1021/acs.jpcb.7b04318. Epub 2017 Aug 31.

21.

The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure.

Chao SH, Schäfer J, Gruebele M.

Biochemistry. 2017 Oct 24;56(42):5671-5678. doi: 10.1021/acs.biochem.7b00215. Epub 2017 Oct 6.

22.

Weak protein-protein interactions in live cells are quantified by cell-volume modulation.

Sukenik S, Ren P, Gruebele M.

Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):6776-6781. doi: 10.1073/pnas.1700818114. Epub 2017 Jun 12.

23.

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels.

Kisley L, Serrano KA, Guin D, Kong X, Gruebele M, Leckband DE.

ACS Appl Mater Interfaces. 2017 Jul 5;9(26):21606-21617. doi: 10.1021/acsami.7b01371. Epub 2017 Jun 23.

PMID:
28553706
24.

Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution.

Nguyen D, Nguyen HA, Lyding JW, Gruebele M.

ACS Nano. 2017 Jun 27;11(6):6328-6335. doi: 10.1021/acsnano.7b02649. Epub 2017 May 30.

PMID:
28525955
25.

Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact.

Kachlishvili K, Dave K, Gruebele M, Scheraga HA, Maisuradze GG.

J Phys Chem B. 2017 Apr 20;121(15):3276-3284. doi: 10.1021/acs.jpcb.6b07250. Epub 2016 Sep 29.

PMID:
27584585
26.

Mechanical approach to chemical transport.

Kocherginsky N, Gruebele M.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11116-11121. Epub 2016 Sep 19.

27.

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State.

Ghaemi Z, Guzman I, Baek JU, Gruebele M, Luthey-Schulten Z.

J Chem Theory Comput. 2016 Sep 13;12(9):4593-9. doi: 10.1021/acs.jctc.6b00418. Epub 2016 Sep 1.

PMID:
27529183
28.

Globular Protein Folding In Vitro and In Vivo.

Gruebele M, Dave K, Sukenik S.

Annu Rev Biophys. 2016 Jul 5;45:233-51. doi: 10.1146/annurev-biophys-062215-011236.

PMID:
27391927
29.

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics.

Nguyen D, Zhu ZG, Pringle B, Lyding J, Wang WH, Gruebele M.

Phys Chem Chem Phys. 2016 Jun 22;18(25):16856-61. doi: 10.1039/c6cp02654k.

PMID:
27283239
30.

Subcellular modulation of protein VlsE stability and folding kinetics.

Tai J, Dave K, Hahn V, Guzman I, Gruebele M.

FEBS Lett. 2016 May;590(10):1409-16. doi: 10.1002/1873-3468.12193. Epub 2016 May 17.

31.

Disulfide Bridges: Bringing Together Frustrated Structure in a Bioactive Peptide.

Zhang Y, Schulten K, Gruebele M, Bansal PS, Wilson D, Daly NL.

Biophys J. 2016 Apr 26;110(8):1744-1752. doi: 10.1016/j.bpj.2016.03.027.

32.

Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ(6-85) Folding.

Sukenik S, Pogorelov TV, Gruebele M.

J Phys Chem Lett. 2016 Jun 2;7(11):1960-5. doi: 10.1021/acs.jpclett.6b00582. Epub 2016 May 13.

PMID:
27101436
33.

Stochastic Resonance in Protein Folding Dynamics.

Davtyan A, Platkov M, Gruebele M, Papoian GA.

Chemphyschem. 2016 May 4;17(9):1305-13. doi: 10.1002/cphc.201501125. Epub 2016 Apr 28.

PMID:
26992148
34.

ReAsH as a Quantitative Probe of In-Cell Protein Dynamics.

Gelman H, Wirth AJ, Gruebele M.

Biochemistry. 2016 Apr 5;55(13):1968-76. doi: 10.1021/acs.biochem.5b01336. Epub 2016 Mar 18.

PMID:
26959408
35.

Dodine as a transparent protein denaturant for circular dichroism and infrared studies.

Guin D, Sye K, Dave K, Gruebele M.

Protein Sci. 2016 May;25(5):1061-8. doi: 10.1002/pro.2914. Epub 2016 Mar 21.

36.

The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Nonadditive.

Dave K, Gelman H, Thu CT, Guin D, Gruebele M.

J Phys Chem B. 2016 Mar 24;120(11):2878-85. doi: 10.1021/acs.jpcb.5b11915. Epub 2016 Mar 14.

PMID:
26923443
37.

High-Resolution Mapping of the Folding Transition State of a WW Domain.

Dave K, Jäger M, Nguyen H, Kelly JW, Gruebele M.

J Mol Biol. 2016 Apr 24;428(8):1617-36. doi: 10.1016/j.jmb.2016.02.008. Epub 2016 Feb 12.

38.

Environmental Fluctuations and Stochastic Resonance in Protein Folding.

Dave K, Davtyan A, Papoian GA, Gruebele M, Platkov M.

Chemphyschem. 2016 May 4;17(9):1341-8. doi: 10.1002/cphc.201501041. Epub 2016 Jan 20.

39.

Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory.

Nienhaus L, Goings JJ, Nguyen D, Wieghold S, Lyding JW, Li X, Gruebele M.

J Am Chem Soc. 2015 Nov 25;137(46):14743-50. doi: 10.1021/jacs.5b09272. Epub 2015 Nov 13.

PMID:
26518039
40.

Optoelectronic Switching of a Carbon Nanotube Chiral Junction Imaged with Nanometer Spatial Resolution.

Nienhaus L, Wieghold S, Nguyen D, Lyding JW, Scott GE, Gruebele M.

ACS Nano. 2015 Nov 24;9(11):10563-70. doi: 10.1021/acsnano.5b04872. Epub 2015 Sep 15.

PMID:
26348682
41.

Fast-folding proteins under stress.

Dave K, Gruebele M.

Cell Mol Life Sci. 2015 Nov;72(22):4273-85. doi: 10.1007/s00018-015-2002-3. Epub 2015 Aug 1. Review.

42.

The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog.

Girdhar K, Gruebele M, Chemla YR.

PLoS One. 2015 Jul 1;10(7):e0128668. doi: 10.1371/journal.pone.0128668. eCollection 2015.

43.

Sub-nanometer glass surface dynamics induced by illumination.

Nguyen D, Nienhaus L, Haasch RT, Lyding J, Gruebele M.

J Chem Phys. 2015 Jun 21;142(23):234505. doi: 10.1063/1.4922695.

PMID:
26093566
44.

Mapping fast protein folding with multiple-site fluorescent probes.

Prigozhin MB, Chao SH, Sukenik S, Pogorelov TV, Gruebele M.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):7966-71. doi: 10.1073/pnas.1422683112. Epub 2015 Jun 15.

45.

Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.

Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M.

J Am Chem Soc. 2015 Jun 10;137(22):7152-7159. doi: 10.1021/jacs.5b02474. Epub 2015 Jun 2.

46.

Native conformational dynamics of the spliceosomal U1A protein.

Guzman I, Ghaemi Z, Baranger A, Luthey-Schulten Z, Gruebele M.

J Phys Chem B. 2015 Mar 5;119(9):3651-61. doi: 10.1021/jp511760m. Epub 2015 Feb 24.

PMID:
25659967
47.

On readout of vibrational qubits using quantum beats.

Shyshlov D, Berrios E, Gruebele M, Babikov D.

J Chem Phys. 2014 Dec 14;141(22):224306. doi: 10.1063/1.4903055.

PMID:
25494748
48.

Protein dynamics in simulation and experiment.

Gruebele M.

J Am Chem Soc. 2014 Dec 3;136(48):16695-7. doi: 10.1021/ja510614s. No abstract available.

PMID:
25465034
49.

Coupled protein diffusion and folding in the cell.

Guo M, Gelman H, Gruebele M.

PLoS One. 2014 Dec 1;9(12):e113040. doi: 10.1371/journal.pone.0113040. eCollection 2014.

50.

The energy landscape of glassy dynamics on the amorphous hafnium diboride surface.

Nguyen D, Mallek J, Cloud AN, Abelson JR, Girolami GS, Lyding J, Gruebele M.

J Chem Phys. 2014 Nov 28;141(20):204501. doi: 10.1063/1.4901132.

PMID:
25429948

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