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Items: 40

1.

Genomic Epidemiology as a Public Health Tool to Combat Mosquito-Borne Virus Outbreaks.

Pollett S, Fauver JR, Maljkovic Berry I, Melendrez M, Morrison A, Gillis LD, Johansson MA, Jarman RG, Grubaugh ND.

J Infect Dis. 2019 Nov 10. pii: jiz302. doi: 10.1093/infdis/jiz302. [Epub ahead of print]

PMID:
31711190
2.

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain.

Hadfield J, Brito AF, Swetnam DM, Vogels CBF, Tokarz RE, Andersen KG, Smith RC, Bedford T, Grubaugh ND.

PLoS Pathog. 2019 Oct 31;15(10):e1008042. doi: 10.1371/journal.ppat.1008042. eCollection 2019 Oct. Review.

3.

Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning Epidemic.

Grubaugh ND, Saraf S, Gangavarapu K, Watts A, Tan AL, Oidtman RJ, Ladner JT, Oliveira G, Matteson NL, Kraemer MUG, Vogels CBF, Hentoff A, Bhatia D, Stanek D, Scott B, Landis V, Stryker I, Cone MR, Kopp EW 4th, Cannons AC, Heberlein-Larson L, White S, Gillis LD, Ricciardi MJ, Kwal J, Lichtenberger PK, Magnani DM, Watkins DI, Palacios G, Hamer DH; GeoSentinel Surveillance Network, Gardner LM, Perkins TA, Baele G, Khan K, Morrison A, Isern S, Michael SF, Andersen KG.

Cell. 2019 Aug 22;178(5):1057-1071.e11. doi: 10.1016/j.cell.2019.07.018.

PMID:
31442400
4.

Endless Forms: Within-Host Variation in the Structure of the West Nile Virus RNA Genome during Serial Passage in Bird Hosts.

Scroggs SLP, Grubaugh ND, Sena JA, Sundararajan A, Schilkey FD, Smith DR, Ebel GD, Hanley KA.

mSphere. 2019 Jun 26;4(3). pii: e00291-19. doi: 10.1128/mSphere.00291-19.

5.

Small RNA responses of Culex mosquitoes and cell lines during acute and persistent virus infection.

Rückert C, Prasad AN, Garcia-Luna SM, Robison A, Grubaugh ND, Weger-Lucarelli J, Ebel GD.

Insect Biochem Mol Biol. 2019 Jun;109:13-23. doi: 10.1016/j.ibmb.2019.04.008. Epub 2019 Apr 5.

6.

Misperceived Risks of Zika-related Microcephaly in India.

Grubaugh ND, Ishtiaq F, Setoh YX, Ko AI.

Trends Microbiol. 2019 May;27(5):381-383. doi: 10.1016/j.tim.2019.02.004. Epub 2019 Feb 27.

PMID:
30826180
7.

Precision epidemiology for infectious disease control.

Ladner JT, Grubaugh ND, Pybus OG, Andersen KG.

Nat Med. 2019 Feb;25(2):206-211. doi: 10.1038/s41591-019-0345-2. Epub 2019 Feb 6. Review.

PMID:
30728537
8.

Arbovirus coinfection and co-transmission: A neglected public health concern?

Vogels CBF, Rückert C, Cavany SM, Perkins TA, Ebel GD, Grubaugh ND.

PLoS Biol. 2019 Jan 22;17(1):e3000130. doi: 10.1371/journal.pbio.3000130. eCollection 2019 Jan.

9.

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.

Grubaugh ND, Gangavarapu K, Quick J, Matteson NL, De Jesus JG, Main BJ, Tan AL, Paul LM, Brackney DE, Grewal S, Gurfield N, Van Rompay KKA, Isern S, Michael SF, Coffey LL, Loman NJ, Andersen KG.

Genome Biol. 2019 Jan 8;20(1):8. doi: 10.1186/s13059-018-1618-7.

10.

Tracking virus outbreaks in the twenty-first century.

Grubaugh ND, Ladner JT, Lemey P, Pybus OG, Rambaut A, Holmes EC, Andersen KG.

Nat Microbiol. 2019 Jan;4(1):10-19. doi: 10.1038/s41564-018-0296-2. Epub 2018 Dec 13. Review.

11.

Adventitious viruses persistently infect three commonly used mosquito cell lines.

Weger-Lucarelli J, Rückert C, Grubaugh ND, Misencik MJ, Armstrong PM, Stenglein MD, Ebel GD, Brackney DE.

Virology. 2018 Aug;521:175-180. doi: 10.1016/j.virol.2018.06.007. Epub 2018 Jun 26.

12.

Fetal demise and failed antibody therapy during Zika virus infection of pregnant macaques.

Magnani DM, Rogers TF, Maness NJ, Grubaugh ND, Beutler N, Bailey VK, Gonzalez-Nieto L, Gutman MJ, Pedreño-Lopez N, Kwal JM, Ricciardi MJ, Myers TA, Julander JG, Bohm RP, Gilbert MH, Schiro F, Aye PP, Blair RV, Martins MA, Falkenstein KP, Kaur A, Curry CL, Kallas EG, Desrosiers RC, Goldschmidt-Clermont PJ, Whitehead SS, Andersen KG, Bonaldo MC, Lackner AA, Panganiban AT, Burton DR, Watkins DI.

Nat Commun. 2018 Apr 24;9(1):1624. doi: 10.1038/s41467-018-04056-4.

13.

Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection.

Ma S, Cahalan S, LaMonte G, Grubaugh ND, Zeng W, Murthy SE, Paytas E, Gamini R, Lukacs V, Whitwam T, Loud M, Lohia R, Berry L, Khan SM, Janse CJ, Bandell M, Schmedt C, Wengelnik K, Su AI, Honore E, Winzeler EA, Andersen KG, Patapoutian A.

Cell. 2018 Apr 5;173(2):443-455.e12. doi: 10.1016/j.cell.2018.02.047. Epub 2018 Mar 22.

14.

Genomic Insights into Zika Virus Emergence and Spread.

Grubaugh ND, Faria NR, Andersen KG, Pybus OG.

Cell. 2018 Mar 8;172(6):1160-1162. doi: 10.1016/j.cell.2018.02.027.

15.

Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas.

Gardner LM, Bóta A, Gangavarapu K, Kraemer MUG, Grubaugh ND.

PLoS Negl Trop Dis. 2018 Jan 18;12(1):e0006194. doi: 10.1371/journal.pntd.0006194. eCollection 2018 Jan.

16.

Ontogeny of the B- and T-cell response in a primary Zika virus infection of a dengue-naïve individual during the 2016 outbreak in Miami, FL.

Ricciardi MJ, Magnani DM, Grifoni A, Kwon YC, Gutman MJ, Grubaugh ND, Gangavarapu K, Sharkey M, Silveira CGT, Bailey VK, Pedreño-Lopez N, Gonzalez-Nieto L, Maxwell HS, Domingues A, Martins MA, Pham J, Weiskopf D, Altman J, Kallas EG, Andersen KG, Stevenson M, Lichtenberger P, Choe H, Whitehead SS, Sette A, Watkins DI.

PLoS Negl Trop Dis. 2017 Dec 21;11(12):e0006000. doi: 10.1371/journal.pntd.0006000. eCollection 2017 Dec.

17.

Neutralizing human monoclonal antibodies prevent Zika virus infection in macaques.

Magnani DM, Rogers TF, Beutler N, Ricciardi MJ, Bailey VK, Gonzalez-Nieto L, Briney B, Sok D, Le K, Strubel A, Gutman MJ, Pedreño-Lopez N, Grubaugh ND, Silveira CGT, Maxwell HS, Domingues A, Martins MA, Lee DE, Okwuazi EE, Jean S, Strobert EA, Chahroudi A, Silvestri G, Vanderford TH, Kallas EG, Desrosiers RC, Bonaldo MC, Whitehead SS, Burton DR, Watkins DI.

Sci Transl Med. 2017 Oct 4;9(410). pii: eaan8184. doi: 10.1126/scitranslmed.aan8184.

18.

The Use of Xenosurveillance to Detect Human Bacteria, Parasites, and Viruses in Mosquito Bloodmeals.

Fauver JR, Gendernalik A, Weger-Lucarelli J, Grubaugh ND, Brackney DE, Foy BD, Ebel GD.

Am J Trop Med Hyg. 2017 Aug;97(2):324-329. doi: 10.4269/ajtmh.17-0063. Epub 2017 Jul 19.

19.

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ.

Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24.

20.

Zika virus evolution and spread in the Americas.

Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes KG, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Nature. 2017 Jun 15;546(7658):411-415. doi: 10.1038/nature22402. Epub 2017 May 24.

21.

Establishment and cryptic transmission of Zika virus in Brazil and the Americas.

Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET Jr, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG.

Nature. 2017 Jun 15;546(7658):406-410. doi: 10.1038/nature22401. Epub 2017 May 24.

22.

Genomic epidemiology reveals multiple introductions of Zika virus into the United States.

Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Nature. 2017 Jun 15;546(7658):401-405. doi: 10.1038/nature22400. Epub 2017 May 24.

23.

Mosquitoes Transmit Unique West Nile Virus Populations during Each Feeding Episode.

Grubaugh ND, Fauver JR, Rückert C, Weger-Lucarelli J, Garcia-Luna S, Murrieta RA, Gendernalik A, Smith DR, Brackney DE, Ebel GD.

Cell Rep. 2017 Apr 25;19(4):709-718. doi: 10.1016/j.celrep.2017.03.076.

24.

Experimental Evolution to Study Virus Emergence.

Grubaugh ND, Andersen KG.

Cell. 2017 Mar 23;169(1):1-3. doi: 10.1016/j.cell.2017.03.018.

25.

Transmission bottlenecks and RNAi collectively influence tick-borne flavivirus evolution.

Grubaugh ND, Rückert C, Armstrong PM, Bransfield A, Anderson JF, Ebel GD, Brackney DE.

Virus Evol. 2016 Oct 26;2(2):vew033. doi: 10.1093/ve/vew033. eCollection 2016 Jul.

26.

Ebola Virus Glycoprotein with Increased Infectivity Dominated the 2013-2016 Epidemic.

Diehl WE, Lin AE, Grubaugh ND, Carvalho LM, Kim K, Kyawe PP, McCauley SM, Donnard E, Kucukural A, McDonel P, Schaffner SF, Garber M, Rambaut A, Andersen KG, Sabeti PC, Luban J.

Cell. 2016 Nov 3;167(4):1088-1098.e6. doi: 10.1016/j.cell.2016.10.014.

27.

Dynamics of West Nile virus evolution in mosquito vectors.

Grubaugh ND, Ebel GD.

Curr Opin Virol. 2016 Dec;21:132-138. doi: 10.1016/j.coviro.2016.09.007. Epub 2016 Oct 24. Review.

28.

Navigating the Zika panic.

Grubaugh ND, Andersen KG.

F1000Res. 2016 Aug 4;5:1914. eCollection 2016.

29.

West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses.

Fauver JR, Grubaugh ND, Krajacich BJ, Weger-Lucarelli J, Lakin SM, Fakoli LS 3rd, Bolay FK, Diclaro JW 2nd, Dabiré KR, Foy BD, Brackney DE, Ebel GD, Stenglein MD.

Virology. 2016 Nov;498:288-299. doi: 10.1016/j.virol.2016.07.031. Epub 2016 Sep 15.

30.

Genetic Drift during Systemic Arbovirus Infection of Mosquito Vectors Leads to Decreased Relative Fitness during Host Switching.

Grubaugh ND, Weger-Lucarelli J, Murrieta RA, Fauver JR, Garcia-Luna SM, Prasad AN, Black WC 4th, Ebel GD.

Cell Host Microbe. 2016 Apr 13;19(4):481-92. doi: 10.1016/j.chom.2016.03.002. Epub 2016 Mar 31.

31.

Isolation of a Novel Insect-Specific Flavivirus from Culiseta melanura in the Northeastern United States.

Misencik MJ, Grubaugh ND, Andreadis TG, Ebel GD, Armstrong PM.

Vector Borne Zoonotic Dis. 2016 Mar;16(3):181-90. doi: 10.1089/vbz.2015.1889. Epub 2016 Jan 25.

32.

West Nile Virus Population Structure, Injury, and Interferon-Stimulated Gene Expression in the Brain From a Fatal Case of Encephalitis.

Grubaugh ND, Massey A, Shives KD, Stenglein MD, Ebel GD, Beckham JD.

Open Forum Infect Dis. 2015 Nov 20;3(1):ofv182. doi: 10.1093/ofid/ofv182. eCollection 2016 Jan.

33.

Temporal and Spatial Variability of Entomological Risk Indices for West Nile Virus Infection in Northern Colorado: 2006-2013.

Fauver JR, Pecher L, Schurich JA, Bolling BG, Calhoon M, Grubaugh ND, Burkhalter KL, Eisen L, Andre BG, Nasci RS, LeBailly A, Ebel GD, Moore CG.

J Med Entomol. 2016 Mar;53(2):425-34.

34.

Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness.

Grubaugh ND, Smith DR, Brackney DE, Bosco-Lauth AM, Fauver JR, Campbell CL, Felix TA, Romo H, Duggal NK, Dietrich EA, Eike T, Beane JE, Bowen RA, Black WC, Brault AC, Ebel GD.

PLoS Pathog. 2015 May 20;11(5):e1004874. doi: 10.1371/journal.ppat.1004874. eCollection 2015 May.

35.

Xenosurveillance: a novel mosquito-based approach for examining the human-pathogen landscape.

Grubaugh ND, Sharma S, Krajacich BJ, Fakoli LS III, Bolay FK, Diclaro JW II, Johnson WE, Ebel GD, Foy BD, Brackney DE.

PLoS Negl Trop Dis. 2015 Mar 16;9(3):e0003628. doi: 10.1371/journal.pntd.0003628. eCollection 2015 Mar.

36.

Sampling host-seeking anthropophilic mosquito vectors in west Africa: comparisons of an active human-baited tent-trap against gold standard methods.

Krajacich BJ, Slade JR, Mulligan RF, LaBrecque B, Alout H, Grubaugh ND, Meyers JI, Fakoli LS 3rd, Bolay FK, Brackney DE, Burton TA, Seaman JA, Diclaro JW 2nd, Dabiré RK, Foy BD.

Am J Trop Med Hyg. 2015 Feb;92(2):415-21. doi: 10.4269/ajtmh.14-0303. Epub 2014 Nov 24.

37.

Evaluation of ivermectin mass drug administration for malaria transmission control across different West African environments.

Alout H, Krajacich BJ, Meyers JI, Grubaugh ND, Brackney DE, Kobylinski KC, Diclaro JW 2nd, Bolay FK, Fakoli LS, Diabaté A, Dabiré RK, Bougma RW, Foy BD.

Malar J. 2014 Nov 3;13:417. doi: 10.1186/1475-2875-13-417.

38.

Multi-gene detection and identification of mosquito-borne RNA viruses using an oligonucleotide microarray.

Grubaugh ND, McMenamy SS, Turell MJ, Lee JS.

PLoS Negl Trop Dis. 2013 Aug 15;7(8):e2349. doi: 10.1371/journal.pntd.0002349. eCollection 2013.

39.

Evaluation of a field-portable DNA microarray platform and nucleic acid amplification strategies for the detection of arboviruses, arthropods, and bloodmeals.

Grubaugh ND, Petz LN, Melanson VR, McMenamy SS, Turell MJ, Long LS, Pisarcik SE, Kengluecha A, Jaichapor B, O'Guinn ML, Lee JS.

Am J Trop Med Hyg. 2013 Feb;88(2):245-53. doi: 10.4269/ajtmh.2012.12-0048. Epub 2012 Dec 18.

40.

Isolation and genomic characterization of Chaoyang virus strain ROK144 from Aedes vexans nipponii from the Republic of Korea.

Lee JS, Grubaugh ND, Kondig JP, Turell MJ, Kim HC, Klein TA, O'Guinn ML.

Virology. 2013 Jan 20;435(2):220-4. doi: 10.1016/j.virol.2012.10.020. Epub 2012 Nov 2.

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