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Identification, characterization and benefits of an exclusion system in an integrative and conjugative element of Bacillus subtilis.

Avello M, Davis KP, Grossman AD.

Mol Microbiol. 2019 Oct;112(4):1066-1082. doi: 10.1111/mmi.14359. Epub 2019 Aug 16.


Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi.

Peters JM, Koo BM, Patino R, Heussler GE, Hearne CC, Qu J, Inclan YF, Hawkins JS, Lu CHS, Silvis MR, Harden MM, Osadnik H, Peters JE, Engel JN, Dutton RJ, Grossman AD, Gross CA, Rosenberg OS.

Nat Microbiol. 2019 Feb;4(2):244-250. doi: 10.1038/s41564-018-0327-z. Epub 2019 Jan 7.


Engineered integrative and conjugative elements for efficient and inducible DNA transfer to undomesticated bacteria.

Brophy JAN, Triassi AJ, Adams BL, Renberg RL, Stratis-Cullum DN, Grossman AD, Voigt CA.

Nat Microbiol. 2018 Sep;3(9):1043-1053. doi: 10.1038/s41564-018-0216-5. Epub 2018 Aug 20.


Genetic networks controlled by the bacterial replication initiator and transcription factor DnaA in Bacillus subtilis.

Washington TA, Smith JL, Grossman AD.

Mol Microbiol. 2017 Oct;106(1):109-128. doi: 10.1111/mmi.13755. Epub 2017 Aug 11.


A Mobile Element in mutS Drives Hypermutation in a Marine Vibrio.

Chu ND, Clarke SA, Timberlake S, Polz MF, Grossman AD, Alm EJ.

mBio. 2017 Feb 7;8(1). pii: e02045-16. doi: 10.1128/mBio.02045-16.


Genetic and biochemical interactions between the bacterial replication initiator DnaA and the nucleoid-associated protein Rok in Bacillus subtilis.

Seid CA, Smith JL, Grossman AD.

Mol Microbiol. 2017 Mar;103(5):798-817. doi: 10.1111/mmi.13590. Epub 2017 Jan 3.


Autonomous Replication of the Conjugative Transposon Tn916.

Wright LD, Grossman AD.

J Bacteriol. 2016 Nov 18;198(24):3355-3366. Print 2016 Dec 15.


Complete Genome Sequence of Bacillus subtilis Strain CU1050, Which Is Sensitive to Phage SPβ.

Johnson CM, Grossman AD.

Genome Announc. 2016 Apr 7;4(2). pii: e00262-16. doi: 10.1128/genomeA.00262-16.


The Composition of the Cell Envelope Affects Conjugation in Bacillus subtilis.

Johnson CM, Grossman AD.

J Bacteriol. 2016 Mar 31;198(8):1241-9. doi: 10.1128/JB.01044-15. Print 2016 Apr.


Identification of host genes that affect acquisition of an integrative and conjugative element in Bacillus subtilis.

Johnson CM, Grossman AD.

Mol Microbiol. 2015 Dec;98(6):1222. doi: 10.1111/mmi.13282. No abstract available.


Analysis of LexA binding sites and transcriptomics in response to genotoxic stress in Leptospira interrogans.

Schons-Fonseca L, da Silva JB, Milanez JS, Domingos RH, Smith JL, Nakaya HI, Grossman AD, Ho PL, da Costa RM.

Nucleic Acids Res. 2016 Feb 18;44(3):1179-91. doi: 10.1093/nar/gkv1536. Epub 2016 Jan 13.


Integrative and Conjugative Elements (ICEs): What They Do and How They Work.

Johnson CM, Grossman AD.

Annu Rev Genet. 2015;49:577-601. doi: 10.1146/annurev-genet-112414-055018. Epub 2015 Oct 14. Review.


Identification of a Single Strand Origin of Replication in the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis.

Wright LD, Johnson CM, Grossman AD.

PLoS Genet. 2015 Oct 6;11(10):e1005556. doi: 10.1371/journal.pgen.1005556. eCollection 2015 Oct.


In Vitro Whole Genome DNA Binding Analysis of the Bacterial Replication Initiator and Transcription Factor DnaA.

Smith JL, Grossman AD.

PLoS Genet. 2015 May 28;11(5):e1005258. doi: 10.1371/journal.pgen.1005258. eCollection 2015 May.


Critical Components of the Conjugation Machinery of the Integrative and Conjugative Element ICEBs1 of Bacillus subtilis.

Leonetti CT, Hamada MA, Laurer SJ, Broulidakis MP, Swerdlow KJ, Lee CA, Grossman AD, Berkmen MB.

J Bacteriol. 2015 Aug 1;197(15):2558-67. doi: 10.1128/JB.00142-15. Epub 2015 May 26.


Identification of host genes that affect acquisition of an integrative and conjugative element in Bacillus subtilis.

Johnson CM, Grossman AD.

Mol Microbiol. 2014 Sep;93(6):1284-301. doi: 10.1111/mmi.12736. Epub 2014 Aug 15. Erratum in: Mol Microbiol. 2015 Dec;98(6):1222.


Complete Genome Sequences of Bacillus subtilis subsp. subtilis Laboratory Strains JH642 (AG174) and AG1839.

Smith JL, Goldberg JM, Grossman AD.

Genome Announc. 2014 Jul 3;2(4). pii: e00663-14. doi: 10.1128/genomeA.00663-14.


Selective pressures to maintain attachment site specificity of integrative and conjugative elements.

Menard KL, Grossman AD.

PLoS Genet. 2013;9(7):e1003623. doi: 10.1371/journal.pgen.1003623. Epub 2013 Jul 18.


Altering physiological networks using drugs: steps towards personalized physiology.

Grossman AD, Cohen MJ, Manley GT, Butte AJ.

BMC Med Genomics. 2013;6 Suppl 2:S7. doi: 10.1186/1755-8794-6-S2-S7. Epub 2013 May 7.


A conserved helicase processivity factor is needed for conjugation and replication of an integrative and conjugative element.

Thomas J, Lee CA, Grossman AD.

PLoS Genet. 2013;9(1):e1003198. doi: 10.1371/journal.pgen.1003198. Epub 2013 Jan 10.


The primosomal protein DnaD inhibits cooperative DNA binding by the replication initiator DnaA in Bacillus subtilis.

Bonilla CY, Grossman AD.

J Bacteriol. 2012 Sep;194(18):5110-7. doi: 10.1128/JB.00958-12. Epub 2012 Jul 20.


Replication-transcription conflicts in bacteria.

Merrikh H, Zhang Y, Grossman AD, Wang JD.

Nat Rev Microbiol. 2012 Jun 6;10(7):449-58. doi: 10.1038/nrmicro2800. Review.


The Bacillus subtilis conjugative transposon ICEBs1 mobilizes plasmids lacking dedicated mobilization functions.

Lee CA, Thomas J, Grossman AD.

J Bacteriol. 2012 Jun;194(12):3165-72. doi: 10.1128/JB.00301-12. Epub 2012 Apr 13.


Control of the replication initiator DnaA by an anti-cooperativity factor.

Merrikh H, Grossman AD.

Mol Microbiol. 2011 Oct;82(2):434-46. doi: 10.1111/j.1365-2958.2011.07821.x. Epub 2011 Sep 14.


Efficient gene transfer in bacterial cell chains.

Babic A, Berkmen MB, Lee CA, Grossman AD.

mBio. 2011 Mar 15;2(2). pii: e00027-11. doi: 10.1128/mBio.00027-11. Print 2011.


Co-directional replication-transcription conflicts lead to replication restart.

Merrikh H, Machón C, Grainger WH, Grossman AD, Soultanas P.

Nature. 2011 Feb 24;470(7335):554-7. doi: 10.1038/nature09758.


The sporulation protein SirA inhibits the binding of DnaA to the origin of replication by contacting a patch of clustered amino acids.

Rahn-Lee L, Merrikh H, Grossman AD, Losick R.

J Bacteriol. 2011 Mar;193(6):1302-7. doi: 10.1128/JB.01390-10. Epub 2011 Jan 14.


Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Smits WK, Merrikh H, Bonilla CY, Grossman AD.

J Bacteriol. 2011 Feb;193(3):640-8. doi: 10.1128/JB.01253-10. Epub 2010 Nov 19.


The transcriptional regulator Rok binds A+T-rich DNA and is involved in repression of a mobile genetic element in Bacillus subtilis.

Smits WK, Grossman AD.

PLoS Genet. 2010 Nov 11;6(11):e1001207. doi: 10.1371/journal.pgen.1001207.


Regulation of horizontal gene transfer in Bacillus subtilis by activation of a conserved site-specific protease.

Bose B, Grossman AD.

J Bacteriol. 2011 Jan;193(1):22-9. doi: 10.1128/JB.01143-10. Epub 2010 Oct 29.


When simple sequence comparison fails: the cryptic case of the shared domains of the bacterial replication initiation proteins DnaB and DnaD.

Marston FY, Grainger WH, Smits WK, Hopcroft NH, Green M, Hounslow AM, Grossman AD, Craven CJ, Soultanas P.

Nucleic Acids Res. 2010 Nov;38(20):6930-42. doi: 10.1093/nar/gkq465. Epub 2010 Jun 28.


Using buoyant mass to measure the growth of single cells.

Godin M, Delgado FF, Son S, Grover WH, Bryan AK, Tzur A, Jorgensen P, Payer K, Grossman AD, Kirschner MW, Manalis SR.

Nat Methods. 2010 May;7(5):387-90. doi: 10.1038/nmeth.1452. Epub 2010 Apr 11.


Identification of complex metabolic states in critically injured patients using bioinformatic cluster analysis.

Cohen MJ, Grossman AD, Morabito D, Knudson MM, Butte AJ, Manley GT.

Crit Care. 2010;14(1):R10. doi: 10.1186/cc8864. Epub 2010 Feb 2.


Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo.

Smits WK, Goranov AI, Grossman AD.

Mol Microbiol. 2010 Jan;75(2):452-61. doi: 10.1111/j.1365-2958.2009.06999.x. Epub 2009 Dec 4.


Autonomous plasmid-like replication of a conjugative transposon.

Lee CA, Babic A, Grossman AD.

Mol Microbiol. 2010 Jan;75(2):268-79. doi: 10.1111/j.1365-2958.2009.06985.x. Epub 2009 Nov 25.


Infection in the intensive care unit alters physiological networks.

Grossman AD, Cohen MJ, Manley GT, Butte AJ.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S4. doi: 10.1186/1471-2105-10-S9-S4.


YabA of Bacillus subtilis controls DnaA-mediated replication initiation but not the transcriptional response to replication stress.

Goranov AI, Breier AM, Merrikh H, Grossman AD.

Mol Microbiol. 2009 Oct;74(2):454-66. doi: 10.1111/j.1365-2958.2009.06876.x. Epub 2009 Sep 8.


Polar positioning of a conjugation protein from the integrative and conjugative element ICEBs1 of Bacillus subtilis.

Berkmen MB, Lee CA, Loveday EK, Grossman AD.

J Bacteriol. 2010 Jan;192(1):38-45. doi: 10.1128/JB.00860-09.


Comparison of responses to double-strand breaks between Escherichia coli and Bacillus subtilis reveals different requirements for SOS induction.

Simmons LA, Goranov AI, Kobayashi H, Davies BW, Yuan DS, Grossman AD, Walker GC.

J Bacteriol. 2009 Feb;191(4):1152-61. doi: 10.1128/JB.01292-08. Epub 2008 Dec 5.


Dynamic association of the replication initiator and transcription factor DnaA with the Bacillus subtilis chromosome during replication stress.

Breier AM, Grossman AD.

J Bacteriol. 2009 Jan;191(2):486-93. doi: 10.1128/JB.01294-08. Epub 2008 Nov 14.


Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.

Griffith KL, Grossman AD.

Mol Microbiol. 2008 Nov;70(4):1012-25. doi: 10.1111/j.1365-2958.2008.06467.x. Epub 2008 Sep 22.


A conserved anti-repressor controls horizontal gene transfer by proteolysis.

Bose B, Auchtung JM, Lee CA, Grossman AD.

Mol Microbiol. 2008 Nov;70(3):570-82. doi: 10.1111/j.1365-2958.2008.06414.x. Epub 2008 Aug 29.


Clp and Lon proteases occupy distinct subcellular positions in Bacillus subtilis.

Simmons LA, Grossman AD, Walker GC.

J Bacteriol. 2008 Oct;190(20):6758-68. doi: 10.1128/JB.00590-08. Epub 2008 Aug 8.


A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.

Griffith KL, Grossman AD.

J Mol Biol. 2008 Aug 29;381(2):261-75. doi: 10.1016/j.jmb.2008.06.035. Epub 2008 Jun 18.


Beta clamp directs localization of mismatch repair in Bacillus subtilis.

Simmons LA, Davies BW, Grossman AD, Walker GC.

Mol Cell. 2008 Feb 15;29(3):291-301. doi: 10.1016/j.molcel.2007.10.036.


A probabilistic algorithm for estimating the intention of computer users with movement disorders.

Grossman AD, Sanger TD.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:3605-8.


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