Send to

Choose Destination
PLoS Comput Biol. 2018 Jul 6;14(7):e1006283. doi: 10.1371/journal.pcbi.1006283. eCollection 2018 Jul.

Unsupervised clustering of temporal patterns in high-dimensional neuronal ensembles using a novel dissimilarity measure.

Author information

Donders Institute for Brain, Cognition and Behaviour, Radboud Universiteit, Nijmegen, the Netherlands.
Ernst Strüngmann Institute for Neuroscience in cooperation with Max Planck Society, Frankfurt am Main, Germany.


Temporally ordered multi-neuron patterns likely encode information in the brain. We introduce an unsupervised method, SPOTDisClust (Spike Pattern Optimal Transport Dissimilarity Clustering), for their detection from high-dimensional neural ensembles. SPOTDisClust measures similarity between two ensemble spike patterns by determining the minimum transport cost of transforming their corresponding normalized cross-correlation matrices into each other (SPOTDis). Then, it performs density-based clustering based on the resulting inter-pattern dissimilarity matrix. SPOTDisClust does not require binning and can detect complex patterns (beyond sequential activation) even when high levels of out-of-pattern "noise" spiking are present. Our method handles efficiently the additional information from increasingly large neuronal ensembles and can detect a number of patterns that far exceeds the number of recorded neurons. In an application to neural ensemble data from macaque monkey V1 cortex, SPOTDisClust can identify different moving stimulus directions on the sole basis of temporal spiking patterns.

[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for Public Library of Science Icon for PubMed Central
Loading ...
Support Center