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Items: 1 to 50 of 80

1.

Generalized Flory Theory for Rotational Symmetry Breaking of Complex Macromolecules.

Kelly J, Grosberg AY, Bruinsma R.

Phys Rev Lett. 2019 Mar 29;122(12):128003. doi: 10.1103/PhysRevLett.122.128003.

PMID:
30978098
2.

Freely Jointed Polymers Made of Droplets.

McMullen A, Holmes-Cerfon M, Sciortino F, Grosberg AY, Brujic J.

Phys Rev Lett. 2018 Sep 28;121(13):138002. doi: 10.1103/PhysRevLett.121.138002.

PMID:
30312053
3.

Memory effects in active particles with exponentially correlated propulsion.

Sandford C, Grosberg AY.

Phys Rev E. 2018 Jan;97(1-1):012602. doi: 10.1103/PhysRevE.97.012602.

PMID:
29448418
4.

Confining annealed branched polymers inside spherical capsids.

Grosberg AY, Bruinsma R.

J Biol Phys. 2018 Jun;44(2):133-145. doi: 10.1007/s10867-018-9483-x. Epub 2018 Feb 14.

5.

Pressure and flow of exponentially self-correlated active particles.

Sandford C, Grosberg AY, Joanny JF.

Phys Rev E. 2017 Nov;96(5-1):052605. doi: 10.1103/PhysRevE.96.052605. Epub 2017 Nov 15.

PMID:
29347649
6.

Flory theory of randomly branched polymers.

Everaers R, Grosberg AY, Rubinstein M, Rosa A.

Soft Matter. 2017 Feb 8;13(6):1223-1234. doi: 10.1039/c6sm02756c.

7.

Direct observation of DNA knots using a solid-state nanopore.

Plesa C, Verschueren D, Pud S, van der Torre J, Ruitenberg JW, Witteveen MJ, Jonsson MP, Grosberg AY, Rabin Y, Dekker C.

Nat Nanotechnol. 2016 Dec;11(12):1093-1097. doi: 10.1038/nnano.2016.153. Epub 2016 Aug 15.

PMID:
27525473
8.

Vingt ans apr├Ęs (Twenty years after): Comment on "Disentangling DNA molecules" by Alexander Vologodskii.

Grosberg AY.

Phys Life Rev. 2016 Sep;18:139-143. doi: 10.1016/j.plrev.2016.07.006. Epub 2016 Jul 9. No abstract available.

PMID:
27432779
9.

Ensemble View of RNAs and Proteins: Loops, Knots, Territories, and Evolution.

Grosberg AY.

Biophys J. 2016 Jun 7;110(11):2289-2290. doi: 10.1016/j.bpj.2016.04.021. Review. No abstract available.

10.

Extruding Loops to Make Loopy Globules?

Grosberg AY.

Biophys J. 2016 May 24;110(10):2133-5. doi: 10.1016/j.bpj.2016.04.008. No abstract available.

11.

Scale-Dependent Viscosity in Polymer Fluids.

Grosberg AY, Joanny JF, Srinin W, Rabin Y.

J Phys Chem B. 2016 Jul 7;120(26):6383-90. doi: 10.1021/acs.jpcb.6b03339. Epub 2016 May 9.

PMID:
27117395
12.

Sequence Dependence of Viral RNA Encapsidation.

Kelly J, Grosberg AY, Bruinsma R.

J Phys Chem B. 2016 Jul 7;120(26):6038-50. doi: 10.1021/acs.jpcb.6b01964. Epub 2016 Jun 2.

PMID:
27116641
13.

Equilibrium self-assembly of small RNA viruses.

Bruinsma RF, Comas-Garcia M, Garmann RF, Grosberg AY.

Phys Rev E. 2016 Mar;93(3):032405. doi: 10.1103/PhysRevE.93.032405. Epub 2016 Mar 9.

PMID:
27078388
14.

Artificial rheotaxis.

Palacci J, Sacanna S, Abramian A, Barral J, Hanson K, Grosberg AY, Pine DJ, Chaikin PM.

Sci Adv. 2015 May 1;1(4):e1400214. doi: 10.1126/sciadv.1400214. eCollection 2015 May.

15.

Nonequilibrium statistical mechanics of mixtures of particles in contact with different thermostats.

Grosberg AY, Joanny JF.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Sep;92(3):032118. doi: 10.1103/PhysRevE.92.032118. Epub 2015 Sep 14.

PMID:
26465437
16.

Facilitated diffusion of proteins through crumpled fractal DNA globules.

Smrek J, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012702. Epub 2015 Jul 1.

PMID:
26274198
17.

Perturbative theory for Brownian vortexes.

Moyses HW, Bauer RO, Grosberg AY, Grier DG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062144. Epub 2015 Jun 30.

PMID:
26172698
18.

Understanding the dynamics of rings in the melt in terms of the annealed tree model.

Smrek J, Grosberg AY.

J Phys Condens Matter. 2015 Feb 18;27(6):064117. doi: 10.1088/0953-8984/27/6/064117. Epub 2015 Jan 7.

PMID:
25563563
19.

Chromatin hydrodynamics.

Bruinsma R, Grosberg AY, Rabin Y, Zidovska A.

Biophys J. 2014 May 6;106(9):1871-81. doi: 10.1016/j.bpj.2014.03.038.

20.

The tyranny of correspondence principle: Comment on "Fluctuations in the DNA double helix: A critical review" by Maxim D. Frank-Kamenetskii and Shikha Prakash.

Grosberg AY.

Phys Life Rev. 2014 Jun;11(2):178-80. doi: 10.1016/j.plrev.2014.03.007. Epub 2014 Mar 27. No abstract available.

PMID:
24708943
21.
22.

From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

Halverson JD, Smrek J, Kremer K, Grosberg AY.

Rep Prog Phys. 2014;77(2):022601. doi: 10.1088/0034-4885/77/2/022601. Epub 2014 Jan 28. Review.

PMID:
24472896
23.

Response to "Comment on 'Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics"' [J. Chem. Phys. 139, 217101 (2013)].

Halverson JD, Lee WB, Grest GS, Grosberg AY, Kremer K.

J Chem Phys. 2013 Dec 7;139(21):217102. doi: 10.1063/1.4833175. No abstract available.

PMID:
24320406
24.

Kinetics of DNA-coated sticky particles.

Wu KT, Feng L, Sha R, Dreyfus R, Grosberg AY, Seeman NC, Chaikin PM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Aug;88(2):022304. Epub 2013 Aug 12.

PMID:
24032830
25.

Two cases of reciprocal relations for electric and hydrodynamic currents: A rigid polymer in a nano-channel and a polyelectrolyte gel.

Rowghanian P, Grosberg AY.

J Chem Phys. 2013 Jul 14;139(2):024902. doi: 10.1063/1.4812693.

PMID:
23862960
26.

Electrophoresis of a DNA coil near a nanopore.

Rowghanian P, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Apr;87(4):042723. Epub 2013 Apr 29.

PMID:
23679465
27.

Electrophoretic capture of a DNA chain into a nanopore.

Rowghanian P, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Apr;87(4):042722. Epub 2013 Apr 29.

PMID:
23679464
28.

Fast translocation of proteins through solid state nanopores.

Plesa C, Kowalczyk SW, Zinsmeester R, Grosberg AY, Rabin Y, Dekker C.

Nano Lett. 2013 Feb 13;13(2):658-63. doi: 10.1021/nl3042678. Epub 2013 Jan 29. Erratum in: Nano Lett. 2013 Jul 10;13(7):3445.

29.

Polygamous particles.

Wu KT, Feng L, Sha R, Dreyfus R, Grosberg AY, Seeman NC, Chaikin PM.

Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18731-6. doi: 10.1073/pnas.1207356109. Epub 2012 Oct 24.

30.

Propagation of tension along a polymer chain.

Rowghanian P, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jul;86(1 Pt 1):011803. Epub 2012 Jul 26.

PMID:
23005444
31.

What about a theory?: Comment on "Nanopores: A journey towards DNA sequencing" by Meni Wanunu.

Grosberg AY, Rabin Y.

Phys Life Rev. 2012 Jun;9(2):172-3; discussion 174-6. doi: 10.1016/j.plrev.2012.05.011. Epub 2012 May 17. No abstract available.

PMID:
22609434
32.

Rheology of ring polymer melts: from linear contaminants to ring-linear blends.

Halverson JD, Grest GS, Grosberg AY, Kremer K.

Phys Rev Lett. 2012 Jan 20;108(3):038301. Epub 2012 Jan 18.

PMID:
22400790
33.

Optimal lineage principle for age-structured populations.

Wakamoto Y, Grosberg AY, Kussell E.

Evolution. 2012 Jan;66(1):115-34. doi: 10.1111/j.1558-5646.2011.01418.x. Epub 2011 Sep 13.

PMID:
22220869
34.

Energy conservation versus conservation of energy: comment on "The theory of bio-energy transport in the protein molecules and its properties" by Xiao-Feng Pang.

Grosberg AY.

Phys Life Rev. 2011 Oct;8(3):293-5; discussion 302-6. doi: 10.1016/j.plrev.2011.07.010. Epub 2011 Jul 30. No abstract available.

PMID:
21835704
35.

Force-driven polymer translocation through a nanopore: an old problem revisited.

Rowghanian P, Grosberg AY.

J Phys Chem B. 2011 Dec 8;115(48):14127-35. doi: 10.1021/jp204014r. Epub 2011 Jul 22.

PMID:
21780746
36.

Modeling the conductance and DNA blockade of solid-state nanopores.

Kowalczyk SW, Grosberg AY, Rabin Y, Dekker C.

Nanotechnology. 2011 Aug 5;22(31):315101. doi: 10.1088/0957-4484/22/31/315101. Epub 2011 Jul 6.

PMID:
21730759
37.

Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. II. Dynamics.

Halverson JD, Lee WB, Grest GS, Grosberg AY, Kremer K.

J Chem Phys. 2011 May 28;134(20):204905. doi: 10.1063/1.3587138.

PMID:
21639475
38.

Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics.

Halverson JD, Lee WB, Grest GS, Grosberg AY, Kremer K.

J Chem Phys. 2011 May 28;134(20):204904. doi: 10.1063/1.3587137.

PMID:
21639474
39.

DNA capture into a nanopore: interplay of diffusion and electrohydrodynamics.

Grosberg AY, Rabin Y.

J Chem Phys. 2010 Oct 28;133(16):165102. doi: 10.1063/1.3495481.

PMID:
21033823
40.

Minimal model for Brownian vortexes.

Sun B, Grier DG, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Aug;82(2 Pt 1):021123. Epub 2010 Aug 25.

PMID:
20866791
41.

Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Wanunu M, Morrison W, Rabin Y, Grosberg AY, Meller A.

Nat Nanotechnol. 2010 Feb;5(2):160-5. doi: 10.1038/nnano.2009.379. Epub 2009 Dec 20.

42.

Brownian vortexes.

Sun B, Lin J, Darby E, Grosberg AY, Grier DG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 1):010401. Epub 2009 Jul 8.

PMID:
19658638
43.

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors.

Wen Q, Stepanyants A, Elston GN, Grosberg AY, Chklovskii DB.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12536-41. doi: 10.1073/pnas.0901530106. Epub 2009 Jul 21.

44.

Statistics of polymer rings in the melt: a numerical simulation study.

Vettorel T, Grosberg AY, Kremer K.

Phys Biol. 2009 Jul 1;6(2):025013. doi: 10.1088/1478-3975/6/2/025013.

PMID:
19571364
45.

Adsorption kinetics of a single polymer on a solid plane.

Bhattacharya S, Milchev A, Rostiashvili VG, Grosberg AY, Vilgis TA.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061603. Epub 2008 Jun 20.

PMID:
18643278
46.

Are DNA transcription factor proteins maxwellian demons?

Hu L, Grosberg AY, Bruinsma R.

Biophys J. 2008 Aug;95(3):1151-6. doi: 10.1529/biophysj.108.129825. Epub 2008 May 2.

47.

Metastable tight knots in a wormlike polymer.

Grosberg AY, Rabin Y.

Phys Rev Lett. 2007 Nov 23;99(21):217801. Epub 2007 Nov 20.

PMID:
18233259
48.

Heteropolymer sequence design and preferential solvation of hydrophilic monomers: application of random energy model.

Hu L, Grosberg AY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 1):041921. Epub 2007 Apr 30.

PMID:
17500935
49.

Practical applicability of the Jarzynski relation in statistical mechanics: a pedagogical example.

Lua RC, Grosberg AY.

J Phys Chem B. 2005 Apr 14;109(14):6805-11.

PMID:
16851766
50.

How long does it take to pull an ideal polymer into a small hole?

Grosberg AY, Nechaev S, Tamm M, Vasilyev O.

Phys Rev Lett. 2006 Jun 9;96(22):228105. Epub 2006 Jun 9.

PMID:
16803350

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