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Shared Multidrug Resistance Patterns in Chicken-Associated Escherichia coli Identified by Association Rule Mining.

Cazer CL, Al-Mamun MA, Kaniyamattam K, Love WJ, Booth JG, Lanzas C, Gröhn YT.

Front Microbiol. 2019 Apr 12;10:687. doi: 10.3389/fmicb.2019.00687. eCollection 2019.


Estimation of multidrug resistance variability in the National Antimicrobial Monitoring System.

Zawack K, Love WJ, Lanzas C, Booth JG, Gröhn YT.

Prev Vet Med. 2019 Jun 1;167:137-145. doi: 10.1016/j.prevetmed.2019.03.006. Epub 2019 Mar 12.


Global resistance to antimicrobials and their sustainable use in agriculture.

Lhermie G, Wernli D, Jørgensen PS, Kenkel D, Tauer LW, Gröhn YT.

Lancet Planet Health. 2019 Mar;3(3):e109-e110. doi: 10.1016/S2542-5196(18)30251-1. No abstract available. Erratum in: Lancet Planet Health. 2019 Apr 1;:.


Disease management at the wildlife-livestock interface: Using whole-genome sequencing to study the role of elk in Mycobacterium bovis transmission in Michigan, USA.

Salvador LCM, O'Brien DJ, Cosgrove MK, Stuber TP, Schooley AM, Crispell J, Church SV, Gröhn YT, Robbe-Austerman S, Kao RR.

Mol Ecol. 2019 May;28(9):2192-2205. doi: 10.1111/mec.15061. Epub 2019 May 10.


Assessment of the bovine tuberculosis elimination protocol in the United States.

Verteramo Chiu LJ, Tauer LW, Smith RL, Grohn YT.

J Dairy Sci. 2019 Mar;102(3):2384-2400. doi: 10.3168/jds.2018-14990. Epub 2019 Jan 26.


A data-driven individual-based model of infectious disease in livestock operation: A validation study for paratuberculosis.

Al-Mamun MA, Smith RL, Nigsch A, Schukken YH, Gröhn YT.

PLoS One. 2018 Dec 14;13(12):e0203177. doi: 10.1371/journal.pone.0203177. eCollection 2018.


Expanding behavior pattern sensitivity analysis with model selection and survival analysis.

Cazer CL, Volkova VV, Gröhn YT.

BMC Vet Res. 2018 Nov 20;14(1):355. doi: 10.1186/s12917-018-1674-y.


An assessment of the economic costs to the U.S. dairy market of antimicrobial use restrictions.

Lhermie G, Tauer LW, Gröhn YT.

Prev Vet Med. 2018 Nov 15;160:63-67. doi: 10.1016/j.prevetmed.2018.09.028. Epub 2018 Sep 29.


Sow removal in commercial herds: Patterns and animal level factors in Finland.

Bergman P, Gröhn YT, Rajala-Schultz P, Virtala AM, Oliviero C, Peltoniemi O, Heinonen M.

Prev Vet Med. 2018 Nov 1;159:30-39. doi: 10.1016/j.prevetmed.2018.08.010. Epub 2018 Aug 25.


Associations of the first occurrence of pathogen-specific clinical mastitis with milk yield and milk composition in dairy cows.

Kayano M, Itoh M, Kusaba N, Hayashiguchi O, Kida K, Tanaka Y, Kawamoto K, Gröhn YT.

J Dairy Res. 2018 Aug;85(3):309-316. doi: 10.1017/S0022029918000456. Epub 2018 Aug 13.


Phenotypical resistance correlation networks for 10 non-typhoidal Salmonella subpopulations in an active antimicrobial surveillance programme.

Love WJ, Zawack KA, Booth JG, Gröhn YT, Lanzas C.

Epidemiol Infect. 2018 Jun;146(8):991-1002. doi: 10.1017/S0950268818000833. Epub 2018 Apr 30.


An agent-based model evaluation of economic control strategies for paratuberculosis in a dairy herd.

Verteramo Chiu LJ, Tauer LW, Al-Mamun MA, Kaniyamattam K, Smith RL, Grohn YT.

J Dairy Sci. 2018 Jul;101(7):6443-6454. doi: 10.3168/jds.2017-13175. Epub 2018 Apr 26.


The farm cost of decreasing antimicrobial use in dairy production.

Lhermie G, Tauer LW, Gröhn YT.

PLoS One. 2018 Mar 22;13(3):e0194832. doi: 10.1371/journal.pone.0194832. eCollection 2018.


Inferring the interaction structure of resistance to antimicrobials.

Zawack K, Love W, Lanzas C, Booth JG, Gröhn YT.

Prev Vet Med. 2018 Apr 1;152:81-88. doi: 10.1016/j.prevetmed.2018.02.007. Epub 2018 Feb 12.


Does clinical mastitis in the first 100 days of lactation 1 predict increased mastitis occurrence and shorter herd life in dairy cows?

Hertl JA, Schukken YH, Tauer LW, Welcome FL, Gröhn YT.

J Dairy Sci. 2018 Mar;101(3):2309-2323. doi: 10.3168/jds.2017-12615. Epub 2017 Dec 28.


Early detection of Mycobacterium avium subsp. paratuberculosis infection in cattle with multiplex-bead based immunoassays.

Li L, Wagner B, Freer H, Schilling M, Bannantine JP, Campo JJ, Katani R, Grohn YT, Radzio-Basu J, Kapur V.

PLoS One. 2017 Dec 19;12(12):e0189783. doi: 10.1371/journal.pone.0189783. eCollection 2017.


Pathogenesis, Molecular Genetics, and Genomics of Mycobacterium avium subsp. paratuberculosis, the Etiologic Agent of Johne's Disease.

Rathnaiah G, Zinniel DK, Bannantine JP, Stabel JR, Gröhn YT, Collins MT, Barletta RG.

Front Vet Sci. 2017 Nov 6;4:187. doi: 10.3389/fvets.2017.00187. eCollection 2017. Review.


Transmission dynamics of intramammary infections caused by Corynebacterium species.

Dalen G, Rachah A, Nørstebø H, Schukken YH, Gröhn YT, Barlow JW, Reksen O.

J Dairy Sci. 2018 Jan;101(1):472-479. doi: 10.3168/jds.2017-13162. Epub 2017 Oct 18.


Use of an Individual-based Model to Control Transmission Pathways of Mycobacterium avium Subsp. paratuberculosis Infection in Cattle Herds.

Al-Mamun MA, Smith RL, Schukken YH, Gröhn YT.

Sci Rep. 2017 Sep 19;7(1):11845. doi: 10.1038/s41598-017-12078-z.


Identification of sero-reactive antigens for the early diagnosis of Johne's disease in cattle.

Li L, Bannantine JP, Campo JJ, Randall A, Grohn YT, Katani R, Schilling M, Radzio-Basu J, Kapur V.

PLoS One. 2017 Sep 1;12(9):e0184373. doi: 10.1371/journal.pone.0184373. eCollection 2017.


The effect of Mycobacterium avium ssp. paratuberculosis infection on clinical mastitis occurrence in dairy cows.

Rossi G, Grohn YT, Schukken YH, Smith RL.

J Dairy Sci. 2017 Sep;100(9):7446-7454. doi: 10.3168/jds.2017-12721. Epub 2017 Jul 12.


Longitudinal relationship between fecal culture, fecal quantitative PCR, and milk ELISA in Mycobacterium avium ssp. paratuberculosis-infected cows from low-prevalence dairy herds.

Beaver A, Sweeney RW, Hovingh E, Wolfgang DR, Gröhn YT, Schukken YH.

J Dairy Sci. 2017 Sep;100(9):7507-7521. doi: 10.3168/jds.2017-12928. Epub 2017 Jun 21.


A proposed analytic framework for determining the impact of an antimicrobial resistance intervention.

Grohn YT, Carson C, Lanzas C, Pullum L, Stanhope M, Volkova V.

Anim Health Res Rev. 2017 Jun;18(1):1-25. doi: 10.1017/S1466252317000019. Epub 2017 May 16. Review.


Models of antimicrobial pressure on intestinal bacteria of the treated host populations.

Volkova VV, Cazer CL, Gröhn YT.

Epidemiol Infect. 2017 Jul;145(10):2081-2094. doi: 10.1017/S095026881700084X. Epub 2017 May 2.


Economic consequences of paratuberculosis control in dairy cattle: A stochastic modeling study.

Smith RL, Al-Mamun MA, Gröhn YT.

Prev Vet Med. 2017 Mar 1;138:17-27. doi: 10.1016/j.prevetmed.2017.01.007. Epub 2017 Jan 10.


Addressing Antimicrobial Resistance: An Overview of Priority Actions to Prevent Suboptimal Antimicrobial Use in Food-Animal Production.

Lhermie G, Gröhn YT, Raboisson D.

Front Microbiol. 2017 Jan 6;7:2114. doi: 10.3389/fmicb.2016.02114. eCollection 2016. Review.


Optimally achieving milk bulk tank somatic cell count thresholds.

Troendle JA, Tauer LW, Gröhn YT.

J Dairy Sci. 2017 Jan;100(1):731-738. doi: 10.3168/jds.2016-11578. Epub 2016 Nov 17.


The value of pathogen information in treating clinical mastitis.

Cha E, Smith RL, Kristensen AR, Hertl JA, Schukken YH, Tauer LW, Welcome FL, Gröhn YT.

J Dairy Res. 2016 Nov;83(4):456-463.


Microbial dynamics of indicator microorganisms on fresh tomatoes in the supply chain from Mexico to the USA.

Zoellner C, Venegas F, Churey JJ, Dávila-Aviña J, Grohn YT, García S, Heredia N, Worobo RW.

Int J Food Microbiol. 2016 Dec 5;238:202-207. doi: 10.1016/j.ijfoodmicro.2016.09.013. Epub 2016 Sep 20.


Comparative risk assessment for new cow-level Mycobacterium avium ssp. paratuberculosis infections between 3 dairy production types: Organic, conventional, and conventional-grazing systems.

Beaver A, Ruegg PL, Gröhn YT, Schukken YH.

J Dairy Sci. 2016 Dec;99(12):9885-9899. doi: 10.3168/jds.2016-11360. Epub 2016 Sep 28.


Modeling of Mycobacterium avium subsp. paratuberculosis dynamics in a dairy herd: An individual based approach.

Al-Mamun MA, Smith RL, Schukken YH, Gröhn YT.

J Theor Biol. 2016 Nov 7;408:105-17. doi: 10.1016/j.jtbi.2016.08.014. Epub 2016 Aug 10.


Monitoring Antimicrobial Resistance in the Food Supply Chain and Its Implications for FDA Policy Initiatives.

Zawack K, Li M, Booth JG, Love W, Lanzas C, Gröhn YT.

Antimicrob Agents Chemother. 2016 Aug 22;60(9):5302-11. doi: 10.1128/AAC.00688-16. Print 2016 Sep.


Corrigendum to "A new compartmental model of Mycobacterium avium subsp. paratuberculosis infection dynamics in cattle" [Prev. Vet. Med. 122 (3) (2015) 298-305].

Smith RL, Schukken YH, Gröhn YT.

Prev Vet Med. 2016 Jun 1;128:142-144. doi: 10.1016/j.prevetmed.2016.01.028. Epub 2016 Apr 30. No abstract available.


Economic comparison of common treatment protocols and J5 vaccination for clinical mastitis in dairy herds using optimized culling decisions.

Kessels JA, Cha E, Johnson SK, Welcome FL, Kristensen AR, Gröhn YT.

J Dairy Sci. 2016 May;99(5):3838-3847. doi: 10.3168/jds.2015-10385.


Analysis of Mycobacterium avium subsp. paratuberculosis Mutant Libraries Reveals Loci-dependent Transposition Biases and Strategies to Novel Mutant Discovery.

Rathnaiah G, Bannantine JP, Bayles DO, Zinniel DK, Stabel JR, Gröhn YT, Barletta RG.

Microbiology. 2016 Feb 16. doi: 10.1099/mic.0.000258. [Epub ahead of print]


Implications of PCR and ELISA results on the routes of bulk-tank contamination with Mycobacterium avium ssp. paratuberculosis.

Beaver A, Cazer CL, Ruegg PL, Gröhn YT, Schukken YH.

J Dairy Sci. 2016 Feb;99(2):1391-1405. doi: 10.3168/jds.2015-9855. Epub 2015 Dec 10.


The effects of progressing and nonprogressing Mycobacterium avium ssp. paratuberculosis infection on milk production in dairy cows.

Smith RL, Gröhn YT, Pradhan AK, Whitlock RH, Van Kessel JS, Smith JM, Wolfgang DR, Schukken YH.

J Dairy Sci. 2016 Feb;99(2):1383-1390. doi: 10.3168/jds.2015-9822. Epub 2015 Dec 10.


A new compartmental model of Mycobacterium avium subsp. paratuberculosis infection dynamics in cattle.

Smith RL, Schukken YH, Gröhn YT.

Prev Vet Med. 2015 Dec 1;122(3):298-305. doi: 10.1016/j.prevetmed.2015.10.008. Epub 2015 Oct 21. Erratum in: Prev Vet Med. 2016 Jun 1;128:142-144.


Use of Approximate Bayesian Computation to Assess and Fit Models of Mycobacterium leprae to Predict Outcomes of the Brazilian Control Program.

Smith RL, Gröhn YT.

PLoS One. 2015 Jun 24;10(6):e0129535. doi: 10.1371/journal.pone.0129535. eCollection 2015.


Sero-prevalence and risk factors associated with African swine fever on pig farms in southwest Nigeria.

Awosanya EJ, Olugasa B, Ogundipe G, Grohn YT.

BMC Vet Res. 2015 Jun 12;11:133. doi: 10.1186/s12917-015-0444-3.


Back to the real world: connecting models with data.

Mitchell RM, Whitlock RH, Gröhn YT, Schukken YH.

Prev Vet Med. 2015 Feb 1;118(2-3):215-25. doi: 10.1016/j.prevetmed.2014.12.009. Epub 2014 Dec 22.


Effect of on-farm use of antimicrobial drugs on resistance in fecal Escherichia coli of preweaned dairy calves.

Pereira RV, Siler JD, Ng JC, Davis MA, Grohn YT, Warnick LD.

J Dairy Sci. 2014 Dec;97(12):7644-54. doi: 10.3168/jds.2014-8521. Epub 2014 Oct 11.


A rational framework for evaluating the next generation of vaccines against Mycobacterium avium subspecies paratuberculosis.

Bannantine JP, Hines ME 2nd, Bermudez LE, Talaat AM, Sreevatsan S, Stabel JR, Chang YF, Coussens PM, Barletta RG, Davis WC, Collins DM, Gröhn YT, Kapur V.

Front Cell Infect Microbiol. 2014 Sep 9;4:126. doi: 10.3389/fcimb.2014.00126. eCollection 2014. Review.


Progression to multi-scale models and the application to food system intervention strategies.

Gröhn YT.

Prev Vet Med. 2015 Feb 1;118(2-3):238-46. doi: 10.1016/j.prevetmed.2014.08.013. Epub 2014 Aug 29.


Effects of pathogen-specific clinical mastitis on probability of conception in Holstein dairy cows.

Hertl JA, Schukken YH, Welcome FL, Tauer LW, Gröhn YT.

J Dairy Sci. 2014 Nov;97(11):6942-54. doi: 10.3168/jds.2014-8203. Epub 2014 Aug 28.


Evaluation of eight live attenuated vaccine candidates for protection against challenge with virulent Mycobacterium avium subspecies paratuberculosis in mice.

Bannantine JP, Everman JL, Rose SJ, Babrak L, Katani R, Barletta RG, Talaat AM, Gröhn YT, Chang YF, Kapur V, Bermudez LE.

Front Cell Infect Microbiol. 2014 Jul 1;4:88. doi: 10.3389/fcimb.2014.00088. eCollection 2014.


Screening of Mycobacterium avium subsp. paratuberculosis mutants for attenuation in a bovine monocyte-derived macrophage model.

Lamont EA, Talaat AM, Coussens PM, Bannantine JP, Grohn YT, Katani R, Li LL, Kapur V, Sreevatsan S.

Front Cell Infect Microbiol. 2014 Jun 30;4:87. doi: 10.3389/fcimb.2014.00087. eCollection 2014.

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