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Items: 1 to 50 of 338

1.

Genomic relatedness and diversity of Swedish native cattle breeds.

Upadhyay M, Eriksson S, Mikko S, Strandberg E, Stålhammar H, Groenen MAM, Crooijmans RPMA, Andersson G, Johansson AM.

Genet Sel Evol. 2019 Oct 2;51(1):56. doi: 10.1186/s12711-019-0496-0.

2.

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe.

Frantz LAF, Haile J, Lin AT, Scheu A, Geörg C, Benecke N, Alexander M, Linderholm A, Mullin VE, Daly KG, Battista VM, Price M, Gron KJ, Alexandri P, Arbogast RM, Arbuckle B, Bӑlӑşescu A, Barnett R, Bartosiewicz L, Baryshnikov G, Bonsall C, Borić D, Boroneanţ A, Bulatović J, Çakirlar C, Carretero JM, Chapman J, Church M, Crooijmans R, De Cupere B, Detry C, Dimitrijevic V, Dumitraşcu V, du Plessis L, Edwards CJ, Erek CM, Erim-Özdoğan A, Ervynck A, Fulgione D, Gligor M, Götherström A, Gourichon L, Groenen MAM, Helmer D, Hongo H, Horwitz LK, Irving-Pease EK, Lebrasseur O, Lesur J, Malone C, Manaseryan N, Marciniak A, Martlew H, Mashkour M, Matthews R, Matuzeviciute GM, Maziar S, Meijaard E, McGovern T, Megens HJ, Miller R, Mohaseb AF, Orschiedt J, Orton D, Papathanasiou A, Pearson MP, Pinhasi R, Radmanović D, Ricaut FX, Richards M, Sabin R, Sarti L, Schier W, Sheikhi S, Stephan E, Stewart JR, Stoddart S, Tagliacozzo A, Tasić N, Trantalidou K, Tresset A, Valdiosera C, van den Hurk Y, Van Poucke S, Vigne JD, Yanevich A, Zeeb-Lanz A, Triantafyllidis A, Gilbert MTP, Schibler J, Rowley-Conwy P, Zeder M, Peters J, Cucchi T, Bradley DG, Dobney K, Burger J, Evin A, Girdland-Flink L, Larson G.

Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17231-17238. doi: 10.1073/pnas.1901169116. Epub 2019 Aug 12.

3.

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.

da Silva V, Ramos M, Groenen M, Crooijmans R, Johansson A, Regitano L, Coutinho L, Zimmer R, Waldron L, Geistlinger L.

Bioinformatics. 2019 Aug 8. pii: btz632. doi: 10.1093/bioinformatics/btz632. [Epub ahead of print]

PMID:
31392308
4.

The genome of the live-bearing fish Heterandria formosa implicates a role of conserved vertebrate genes in the evolution of placental fish.

van Kruistum H, van den Heuvel J, Travis J, Kraaijeveld K, Zwaan BJ, Groenen MAM, Megens HJ, Pollux BJA.

BMC Evol Biol. 2019 Jul 26;19(1):156. doi: 10.1186/s12862-019-1484-2.

5.

Response to Perrier and Charmantier: On the importance of time scales when studying adaptive evolution.

Bosse M, Spurgin LG, Laine VN, Cole EF, Firth JA, Gienapp P, Gosler AG, McMahon K, Poissant J, Verhagen I, Groenen MAM, van Oers K, Sheldon BC, Visser ME, Slate J.

Evol Lett. 2019 Apr 4;3(3):248-253. doi: 10.1002/evl3.112. eCollection 2019 Jun. No abstract available.

6.

The Genomic Complexity of a Large Inversion in Great Tits.

da Silva VH, Laine VN, Bosse M, Spurgin LG, Derks MFL, van Oers K, Dibbits B, Slate J, Crooijmans RPMA, Visser ME, Groenen MAM.

Genome Biol Evol. 2019 Jul 1;11(7):1870-1881. doi: 10.1093/gbe/evz106.

7.

Deciphering the patterns of genetic admixture and diversity in southern European cattle using genome-wide SNPs.

Upadhyay M, Bortoluzzi C, Barbato M, Ajmone-Marsan P, Colli L, Ginja C, Sonstegard TS, Bosse M, Lenstra JA, Groenen MAM, Crooijmans RPMA.

Evol Appl. 2019 Feb 8;12(5):951-963. doi: 10.1111/eva.12770. eCollection 2019 Jun.

8.

Genomic analysis on pygmy hog reveals extensive interbreeding during wild boar expansion.

Liu L, Bosse M, Megens HJ, Frantz LAF, Lee YL, Irving-Pease EK, Narayan G, Groenen MAM, Madsen O.

Nat Commun. 2019 Apr 30;10(1):1992. doi: 10.1038/s41467-019-10017-2.

9.

Intestinal CD103+CD4+ and CD103+CD8+ T-Cell Subsets in the Gut of Inflammatory Bowel Disease Patients at Diagnosis and During Follow-up.

Roosenboom B, Wahab PJ, Smids C, Groenen MJM, van Koolwijk E, van Lochem EG, Horjus Talabur Horje CS.

Inflamm Bowel Dis. 2019 Aug 20;25(9):1497-1509. doi: 10.1093/ibd/izz049.

PMID:
30918941
10.

Clinical follow-up on weight loss, glycemic control, and safety aspects of 24 months of duodenal-jejunal bypass liner implantation.

Betzel B, Cooiman MI, Aarts EO, Janssen IMC, Wahab PJ, Groenen MJM, Drenth JPH, Berends FJ.

Surg Endosc. 2019 Mar 14. doi: 10.1007/s00464-019-06752-8. [Epub ahead of print]

PMID:
30877567
11.

Loss of function mutations in essential genes cause embryonic lethality in pigs.

Derks MFL, Gjuvsland AB, Bosse M, Lopes MS, van Son M, Harlizius B, Tan BF, Hamland H, Grindflek E, Groenen MAM, Megens HJ.

PLoS Genet. 2019 Mar 15;15(3):e1008055. doi: 10.1371/journal.pgen.1008055. eCollection 2019 Mar.

12.

Deleterious alleles in the context of domestication, inbreeding, and selection.

Bosse M, Megens HJ, Derks MFL, de Cara ÁMR, Groenen MAM.

Evol Appl. 2018 Sep 8;12(1):6-17. doi: 10.1111/eva.12691. eCollection 2019 Jan. Review.

13.

Exploring the unmapped DNA and RNA reads in a songbird genome.

Laine VN, Gossmann TI, van Oers K, Visser ME, Groenen MAM.

BMC Genomics. 2019 Jan 8;20(1):19. doi: 10.1186/s12864-018-5378-2.

14.

Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome.

Derks MFL, Lopes MS, Bosse M, Madsen O, Dibbits B, Harlizius B, Groenen MAM, Megens HJ.

PLoS Genet. 2018 Sep 19;14(9):e1007661. doi: 10.1371/journal.pgen.1007661. eCollection 2018 Sep.

15.

Genome-Wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds.

Onzima RB, Upadhyay MR, Doekes HP, Brito LF, Bosse M, Kanis E, Groenen MAM, Crooijmans RPMA.

Front Genet. 2018 Aug 14;9:318. doi: 10.3389/fgene.2018.00318. eCollection 2018.

16.

A Novel Loss-of-Function Variant in Transmembrane Protein 263 (TMEM263) of Autosomal Dwarfism in Chicken.

Wu Z, Derks MFL, Dibbits B, Megens HJ, Groenen MAM, Crooijmans RPMA.

Front Genet. 2018 Jun 7;9:193. doi: 10.3389/fgene.2018.00193. eCollection 2018.

17.

Effectiveness of Pulmonary Rehabilitation in Patients With Chronic Obstructive Pulmonary Disease With Different Degrees of Static Lung Hyperinflation.

Vanfleteren MJ, Koopman M, Spruit MA, Pennings HJ, Smeenk F, Pieters W, van den Bergh JJ, Michels AJ, Wouters EF, Groenen MT, Franssen FM, Vanfleteren LE.

Arch Phys Med Rehabil. 2018 Nov;99(11):2279-2286.e3. doi: 10.1016/j.apmr.2018.05.011. Epub 2018 Jun 12.

PMID:
29906421
18.

Determinants of functional, peak and endurance exercise capacity in people with chronic obstructive pulmonary disease.

McNamara RJ, Houben-Wilke S, Franssen FME, Smid DE, Vanfleteren LEGW, Groenen MTJ, Uszko-Lencer NHMK, Wouters EFM, Alison JA, Spruit MA.

Respir Med. 2018 May;138:81-87. doi: 10.1016/j.rmed.2018.03.032. Epub 2018 Mar 29.

PMID:
29724398
19.

CNVs are associated with genomic architecture in a songbird.

da Silva VH, Laine VN, Bosse M, Oers KV, Dibbits B, Visser ME, M A Crooijmans RP, Groenen MAM.

BMC Genomics. 2018 Mar 13;19(1):195. doi: 10.1186/s12864-018-4577-1.

20.

The impact of genome editing on the introduction of monogenic traits in livestock.

Bastiaansen JWM, Bovenhuis H, Groenen MAM, Megens HJ, Mulder HA.

Genet Sel Evol. 2018 Apr 16;50(1):18. doi: 10.1186/s12711-018-0389-7.

21.

A survey of functional genomic variation in domesticated chickens.

Derks MFL, Megens HJ, Bosse M, Visscher J, Peeters K, Bink MCAM, Vereijken A, Gross C, de Ridder D, Reinders MJT, Groenen MAM.

Genet Sel Evol. 2018 Apr 16;50(1):17. doi: 10.1186/s12711-018-0390-1.

22.

The effects of recent changes in breeding preferences on maintaining traditional Dutch chicken genomic diversity.

Bortoluzzi C, Crooijmans RPMA, Bosse M, Hiemstra SJ, Groenen MAM, Megens HJ.

Heredity (Edinb). 2018 Dec;121(6):564-578. doi: 10.1038/s41437-018-0072-3. Epub 2018 Mar 28.

PMID:
29588508
23.

A high-density SNP chip for genotyping great tit (Parus major) populations and its application to studying the genetic architecture of exploration behaviour.

Kim JM, Santure AW, Barton HJ, Quinn JL, Cole EF; Great Tit HapMap Consortium, Visser ME, Sheldon BC, Groenen MAM, van Oers K, Slate J.

Mol Ecol Resour. 2018 Jul;18(4):877-891. doi: 10.1111/1755-0998.12778. Epub 2018 Apr 16.

PMID:
29573186
24.

Early and late feathering in turkey and chicken: same gene but different mutations.

Derks MFL, Herrero-Medrano JM, Crooijmans RPMA, Vereijken A, Long JA, Megens HJ, Groenen MAM.

Genet Sel Evol. 2018 Mar 22;50(1):7. doi: 10.1186/s12711-018-0380-3.

25.

Genome-wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds.

Onzima RB, Upadhyay MR, Mukiibi R, Kanis E, Groenen MAM, Crooijmans RPMA.

Anim Genet. 2018 Feb;49(1):59-70. doi: 10.1111/age.12631. Epub 2018 Jan 17.

26.

A novel fully covered double-bump stent for staple line leaks after bariatric surgery: a retrospective analysis.

Boerlage TCC, Houben GPM, Groenen MJM, van der Linde K, van de Laar AWJM, Emous M, Fockens P, Voermans RP.

Surg Endosc. 2018 Jul;32(7):3174-3180. doi: 10.1007/s00464-018-6034-2. Epub 2018 Jan 17.

27.

Inflammatory Bowel Disease Is Not a Contraindication for Bariatric Surgery.

Aelfers S, Janssen IMC, Aarts EO, Smids C, Groenen MJ, Berends FJ.

Obes Surg. 2018 Jun;28(6):1681-1687. doi: 10.1007/s11695-017-3076-9.

PMID:
29282629
28.

Intestinal T Cell Profiling in Inflammatory Bowel Disease: Linking T Cell Subsets to Disease Activity and Disease Course.

Smids C, Horjus Talabur Horje CS, Drylewicz J, Roosenboom B, Groenen MJM, van Koolwijk E, van Lochem EG, Wahab PJ.

J Crohns Colitis. 2018 Mar 28;12(4):465-475. doi: 10.1093/ecco-jcc/jjx160.

PMID:
29211912
29.

Redefining Cut-Points for High Symptom Burden of the Global Initiative for Chronic Obstructive Lung Disease Classification in 18,577 Patients With Chronic Obstructive Pulmonary Disease.

Smid DE, Franssen FME, Gonik M, Miravitlles M, Casanova C, Cosio BG, de Lucas-Ramos P, Marin JM, Martinez C, Mir I, Soriano JB, de Torres JP, Agusti A, Atalay NB, Billington J, Boutou AK, Brighenti-Zogg S, Chaplin E, Coster S, Dodd JW, Dürr S, Fernandez-Villar A, Groenen MTJ, Guimarães M, Hejduk K, Higgins V, Hopkinson NS, Horita N, Houben-Wilke S, Janssen DJA, Jehn M, Joerres R, Karch A, Kelly JL, Kim YI, Kimura H, Koblizek V, Kocks JH, Kon SSC, Kwon N, Ladeira I, Lee SD, Leuppi JD, Locantore N, Lopez-Campos JL, D-C Man W, Maricic L, Mendoza L, Miedinger D, Mihaltan F, Minami S, van der Molen T, Murrells TJ, Nakken N, Nishijima Y, Norman IJ, Novotna B, O'Donnell DE, Ogata Y, Pereira ED, Piercy J, Price D, Pothirat C, Raghavan N, Ringbaek T, Sajkov D, Sigari N, Singh S, Small M, da Silva GF, Tanner RJ, Tsiligianni IG, Tulek B, Tzanakis N, Vanfleteren LEGW, Watz H, Webb KA, Wouters EFM, Xie GG, Yoshikawa M, Spruit MA.

J Am Med Dir Assoc. 2017 Dec 1;18(12):1097.e11-1097.e24. doi: 10.1016/j.jamda.2017.09.003. Review.

30.

A systematic survey to identify lethal recessive variation in highly managed pig populations.

Derks MFL, Megens HJ, Bosse M, Lopes MS, Harlizius B, Groenen MAM.

BMC Genomics. 2017 Nov 9;18(1):858. doi: 10.1186/s12864-017-4278-1.

31.

Recent natural selection causes adaptive evolution of an avian polygenic trait.

Bosse M, Spurgin LG, Laine VN, Cole EF, Firth JA, Gienapp P, Gosler AG, McMahon K, Poissant J, Verhagen I, Groenen MAM, van Oers K, Sheldon BC, Visser ME, Slate J.

Science. 2017 Oct 20;358(6361):365-368. doi: 10.1126/science.aal3298.

32.

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle.

Upadhyay MR, Chen W, Lenstra JA, Goderie CRJ, MacHugh DE, Park SDE, Magee DA, Matassino D, Ciani F, Megens HJ, van Arendonk JAM, Groenen MAM; European Cattle Genetic Diversity Consortium; RPMA Crooijmans.

Heredity (Edinb). 2017 Dec;119(6):469. doi: 10.1038/hdy.2017.59. Epub 2017 Oct 11.

33.

Genome-wide SNP data unveils the globalization of domesticated pigs.

Yang B, Cui L, Perez-Enciso M, Traspov A, Crooijmans RPMA, Zinovieva N, Schook LB, Archibald A, Gatphayak K, Knorr C, Triantafyllidis A, Alexandri P, Semiadi G, Hanotte O, Dias D, Dovč P, Uimari P, Iacolina L, Scandura M, Groenen MAM, Huang L, Megens HJ.

Genet Sel Evol. 2017 Sep 21;49(1):71. doi: 10.1186/s12711-017-0345-y.

34.

Distribution and Functionality of Copy Number Variation across European Cattle Populations.

Upadhyay M, da Silva VH, Megens HJ, Visker MHPW, Ajmone-Marsan P, Bâlteanu VA, Dunner S, Garcia JF, Ginja C, Kantanen J, Groenen MAM, Crooijmans RPMA.

Front Genet. 2017 Aug 23;8:108. doi: 10.3389/fgene.2017.00108. eCollection 2017.

35.

A history of hybrids? Genomic patterns of introgression in the True Geese.

Ottenburghs J, Megens HJ, Kraus RHS, van Hooft P, van Wieren SE, Crooijmans RPMA, Ydenberg RC, Groenen MAM, Prins HHT.

BMC Evol Biol. 2017 Aug 22;17(1):201. doi: 10.1186/s12862-017-1048-2.

36.

Physical activity patterns and clusters in 1001 patients with COPD.

Mesquita R, Spina G, Pitta F, Donaire-Gonzalez D, Deering BM, Patel MS, Mitchell KE, Alison J, van Gestel AJ, Zogg S, Gagnon P, Abascal-Bolado B, Vagaggini B, Garcia-Aymerich J, Jenkins SC, Romme EA, Kon SS, Albert PS, Waschki B, Shrikrishna D, Singh SJ, Hopkinson NS, Miedinger D, Benzo RP, Maltais F, Paggiaro P, McKeough ZJ, Polkey MI, Hill K, Man WD, Clarenbach CF, Hernandes NA, Savi D, Wootton S, Furlanetto KC, Cindy Ng LW, Vaes AW, Jenkins C, Eastwood PR, Jarreta D, Kirsten A, Brooks D, Hillman DR, Sant'Anna T, Meijer K, Dürr S, Rutten EP, Kohler M, Probst VS, Tal-Singer R, Gil EG, den Brinker AC, Leuppi JD, Calverley PM, Smeenk FW, Costello RW, Gramm M, Goldstein R, Groenen MT, Magnussen H, Wouters EF, ZuWallack RL, Amft O, Watz H, Spruit MA.

Chron Respir Dis. 2017 Aug;14(3):256-269. doi: 10.1177/1479972316687207. Epub 2017 Feb 24.

37.

The value of serum antibodies in differentiating inflammatory bowel disease, predicting disease activity and disease course in the newly diagnosed patient.

Smids C, Horjus Talabur Horje CS, Groenen MJM, van Koolwijk EHM, Wahab PJ, van Lochem EG.

Scand J Gastroenterol. 2017 Oct;52(10):1104-1112. doi: 10.1080/00365521.2017.1344875. Epub 2017 Jun 29.

PMID:
28661185
38.

Gene networks for total number born in pigs across divergent environments.

Verardo LL, Lopes MS, Mathur P, Madsen O, Silva FF, Groenen MAM, Knol EF, Lopes PS, Guimarães SEF.

Mamm Genome. 2017 Oct;28(9-10):426-435. doi: 10.1007/s00335-017-9696-5. Epub 2017 Jun 2.

PMID:
28577119
39.

Oncopig Soft-Tissue Sarcomas Recapitulate Key Transcriptional Features of Human Sarcomas.

Schachtschneider KM, Liu Y, Mäkeläinen S, Madsen O, Rund LA, Groenen MAM, Schook LB.

Sci Rep. 2017 Jun 1;7(1):2624. doi: 10.1038/s41598-017-02912-9.

40.

Efficacy and safety of PICOPREP tailored dosing compared with PICOPREP day-before dosing for colon cleansing: a multi-centric randomised study.

Kiesslich R, Schubert S, Mross M, Klugmann T, Klemt-Kropp M, Behnken I, Bonnaud G, Keulen E, Groenen M, Blaker M, Ponchon T, Landry W, Stoltenberg M.

Endosc Int Open. 2017 Apr;5(4):E282-E290. doi: 10.1055/s-0043-102433.

41.

Lower-limb muscle function is a determinant of exercise tolerance after lung resection surgery in patients with lung cancer.

Burtin C, Franssen FME, Vanfleteren LEGW, Groenen MTJ, Wouters EFM, Spruit MA.

Respirology. 2017 Aug;22(6):1185-1189. doi: 10.1111/resp.13041. Epub 2017 Mar 30.

PMID:
28370836
42.

Candidate Serum Markers in Early Crohn's Disease: Predictors of Disease Course.

Smids C, Horjus Talabur Horje CS, Nierkens S, Drylewicz J, Groenen MJM, Wahab PJ, van Lochem EG.

J Crohns Colitis. 2017 Sep 1;11(9):1090-1100. doi: 10.1093/ecco-jcc/jjx049.

PMID:
28369318
43.

High endothelial venules associated with T cell subsets in the inflamed gut of newly diagnosed inflammatory bowel disease patients.

Horjus Talabur Horje CS, Smids C, Meijer JW, Groenen MJ, Rijnders MK, van Lochem EG, Wahab PJ.

Clin Exp Immunol. 2017 Apr;188(1):163-173. doi: 10.1111/cei.12918. Epub 2017 Jan 31.

44.

Impact of neonatal iron deficiency on hippocampal DNA methylation and gene transcription in a porcine biomedical model of cognitive development.

Schachtschneider KM, Liu Y, Rund LA, Madsen O, Johnson RW, Groenen MA, Schook LB.

BMC Genomics. 2016 Nov 3;17(1):856.

45.

Weight reduction and improvement in diabetes by the duodenal-jejunal bypass liner: a 198 patient cohort study.

Betzel B, Homan J, Aarts EO, Janssen IMC, de Boer H, Wahab PJ, Groenen MJM, Berends FJ.

Surg Endosc. 2017 Jul;31(7):2881-2891. doi: 10.1007/s00464-016-5299-6. Epub 2016 Nov 1.

PMID:
27804045
46.

Higher quality of life after metal stent placement compared with plastic stent placement for malignant extrahepatic bile duct obstruction: a randomized controlled trial.

Walter D, van Boeckel PG, Groenen MJ, Weusten BL, Witteman BJ, Tan G, Brink MA, Nicolai J, Tan AC, Alderliesten J, Venneman NG, Laleman W, Jansen JM, Bodelier A, Wolters FL, van der Waaij LA, Breumelhof R, Peters FT, Scheffer RC, Steyerberg EW, May AM, Leenders M, Hirdes MM, Vleggaar FP, Siersema PD.

Eur J Gastroenterol Hepatol. 2017 Feb;29(2):231-237. doi: 10.1097/MEG.0000000000000762.

PMID:
27741030
47.

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle.

Upadhyay MR, Chen W, Lenstra JA, Goderie CR, MacHugh DE, Park SD, Magee DA, Matassino D, Ciani F, Megens HJ, van Arendonk JA, Groenen MA; European Cattle Genetic Diversity Consortium; RPMA Crooijmans.

Heredity (Edinb). 2017 Feb;118(2):169-176. doi: 10.1038/hdy.2016.79. Epub 2016 Sep 28. Erratum in: Heredity (Edinb). 2017 Oct 11;:.

48.

Prevalence of Upper Gastrointestinal Lesions at Primary Diagnosis in Adults with Inflammatory Bowel Disease.

Talabur Horje CS, Meijer J, Rovers L, van Lochem EG, Groenen MJ, Wahab PJ.

Inflamm Bowel Dis. 2016 Sep;22(9):E33-4. doi: 10.1097/MIB.0000000000000888. No abstract available.

PMID:
27542141
49.

GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.

Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, Chamberlain A, Cheng H, Crooijmans RP, Delany ME, Finno CJ, Groenen MA, Hayes B, Lunney JK, Petersen JL, Plastow GS, Schmidt CJ, Song J, Watson M.

Anim Genet. 2016 Oct;47(5):528-33. doi: 10.1111/age.12466. Epub 2016 Jul 24.

50.

Changes in glycemic control and body weight after explantation of the duodenal-jejunal bypass liner.

Betzel B, Koehestanie P, Homan J, Aarts EO, Janssen IM, de Boer H, Wahab PJ, Groenen MJ, Berends FJ.

Gastrointest Endosc. 2017 Feb;85(2):409-415. doi: 10.1016/j.gie.2016.07.027. Epub 2016 Jul 21.

PMID:
27451295

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