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Global transcriptomic analyses of Salmonella enterica in Iron-depleted and Iron-rich growth conditions.

Khajanchi BK, Xu J, Grim CJ, Ottesen AR, Ramachandran P, Foley SL.

BMC Genomics. 2019 Jun 13;20(1):490. doi: 10.1186/s12864-019-5768-0.


Microbiomes Associated With Foods From Plant and Animal Sources.

Jarvis KG, Daquigan N, White JR, Morin PM, Howard LM, Manetas JE, Ottesen A, Ramachandran P, Grim CJ.

Front Microbiol. 2018 Oct 23;9:2540. doi: 10.3389/fmicb.2018.02540. eCollection 2018.


A Comprehensive Evaluation of the Genetic Relatedness of Listeria monocytogenes Serotype 4b Variant Strains.

Burall LS, Grim CJ, Mammel MK, Datta AR.

Front Public Health. 2017 Sep 13;5:241. doi: 10.3389/fpubh.2017.00241. eCollection 2017.


High-Resolution Microbiome Profiling for Detection and Tracking of Salmonella enterica.

Grim CJ, Daquigan N, Lusk Pfefer TS, Ottesen AR, White JR, Jarvis KG.

Front Microbiol. 2017 Aug 18;8:1587. doi: 10.3389/fmicb.2017.01587. eCollection 2017.


Genotypic and phenotypic characterization of multidrug resistant Salmonella Typhimurium and Salmonella Kentucky strains recovered from chicken carcasses.

Tasmin R, Hasan NA, Grim CJ, Grant A, Choi SY, Alam MS, Bell R, Cavanaugh C, Balan KV, Babu US, Parveen S.

PLoS One. 2017 May 8;12(5):e0176938. doi: 10.1371/journal.pone.0176938. eCollection 2017.


A clade of Listeria monocytogenes serotype 4b variant strains linked to recent listeriosis outbreaks associated with produce from a defined geographic region in the US.

Burall LS, Grim CJ, Datta AR.

PLoS One. 2017 May 2;12(5):e0176912. doi: 10.1371/journal.pone.0176912. eCollection 2017.


Use of a Pan-Genomic DNA Microarray in Determination of the Phylogenetic Relatedness among Cronobacter spp. and Its Use as a Data Mining Tool to Understand Cronobacter Biology.

Tall BD, Gangiredla J, Grim CJ, Patel IR, Jackson SA, Mammel MK, Kothary MH, Sathyamoorthy V, Carter L, Fanning S, Iversen C, Pagotto F, Stephan R, Lehner A, Farber J, Yan QQ, Gopinath GR.

Microarrays (Basel). 2017 Mar 4;6(1). pii: E6. doi: 10.3390/microarrays6010006. Review.


Early Recovery of Salmonella from Food Using a 6-Hour Non-selective Pre-enrichment and Reformulation of Tetrathionate Broth.

Daquigan N, Grim CJ, White JR, Hanes DE, Jarvis KG.

Front Microbiol. 2016 Dec 27;7:2103. doi: 10.3389/fmicb.2016.02103. eCollection 2016.


Draft Genome Sequence of Vibrio (Listonella) anguillarum ATCC 14181.

Grim CJ, Schreier HJ.

Genome Announc. 2016 Oct 20;4(5). pii: e01185-16. doi: 10.1128/genomeA.01185-16.


Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC.

Sheppard AE, Stoesser N, Wilson DJ, Sebra R, Kasarskis A, Anson LW, Giess A, Pankhurst LJ, Vaughan A, Grim CJ, Cox HL, Yeh AJ; Modernising Medical Microbiology (MMM) Informatics Group, Sifri CD, Walker AS, Peto TE, Crook DW, Mathers AJ.

Antimicrob Agents Chemother. 2016 May 23;60(6):3767-78. doi: 10.1128/AAC.00464-16. Print 2016 Jun.


Whole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis Outbreaks.

Burall LS, Grim CJ, Mammel MK, Datta AR.

PLoS One. 2016 Mar 7;11(3):e0150797. doi: 10.1371/journal.pone.0150797. eCollection 2016.


Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis.

Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ, Isom RP, Hasan NA, Colwell RR, Chopra AK.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):722-7. doi: 10.1073/pnas.1523817113. Epub 2016 Jan 5.


Occurrence and Diversity of Clinically Important Vibrio Species in the Aquatic Environment of Georgia.

Kokashvili T, Whitehouse CA, Tskhvediani A, Grim CJ, Elbakidze T, Mitaishvili N, Janelidze N, Jaiani E, Haley BJ, Lashkhi N, Huq A, Colwell RR, Tediashvili M.

Front Public Health. 2015 Oct 13;3:232. doi: 10.3389/fpubh.2015.00232. eCollection 2015.


Analysis of the cellulose synthase operon genes, bcsA, bcsB, and bcsC in Cronobacter species: Prevalence among species and their roles in biofilm formation and cell-cell aggregation.

Hu L, Grim CJ, Franco AA, Jarvis KG, Sathyamoorthy V, Kothary MH, McCardell BA, Tall BD.

Food Microbiol. 2015 Dec;52:97-105. doi: 10.1016/ Epub 2015 Jul 7.


Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.

Jarvis KG, White JR, Grim CJ, Ewing L, Ottesen AR, Beaubrun JJ, Pettengill JB, Brown E, Hanes DE.

BMC Microbiol. 2015 Aug 12;15:160. doi: 10.1186/s12866-015-0497-2.


Genome Sequence of Cronobacter sakazakii Serogroup O:4, Sequence Type 4 Strain CDC 2009-03746, Isolated from a Fatal Case of Infantile Meningitis.

Grim CJ, Gopinath GR, Jarvis KG, Sathyamoorthy V, Trach LH, Chase HR, Tall BD.

Genome Announc. 2015 May 21;3(3). pii: e00492-15. doi: 10.1128/genomeA.00492-15.


Development of a Custom-Designed, Pan Genomic DNA Microarray to Characterize Strain-Level Diversity among Cronobacter spp.

Tall BD, Gangiredla J, Gopinath GR, Yan Q, Chase HR, Lee B, Hwang S, Trach L, Park E, Yoo Y, Chung T, Jackson SA, Patel IR, Sathyamoorthy V, Pava-Ripoll M, Kotewicz ML, Carter L, Iversen C, Pagotto F, Stephan R, Lehner A, Fanning S, Grim CJ.

Front Pediatr. 2015 Apr 30;3:36. doi: 10.3389/fped.2015.00036. eCollection 2015.


Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.


Cronobacter: an emergent pathogen causing meningitis to neonates through their feeds.

Tall BD, Chen Y, Yan Q, Gopinath GR, Grim CJ, Jarvis KG, Fanning S, Lampel KA.

Sci Prog. 2014;97(Pt 2):154-72.


Functional genomic characterization of virulence factors from necrotizing fasciitis-causing strains of Aeromonas hydrophila.

Grim CJ, Kozlova EV, Ponnusamy D, Fitts EC, Sha J, Kirtley ML, van Lier CJ, Tiner BL, Erova TE, Joseph SJ, Read TD, Shak JR, Joseph SW, Singletary E, Felland T, Baze WB, Horneman AJ, Chopra AK.

Appl Environ Microbiol. 2014 Jul;80(14):4162-83. doi: 10.1128/AEM.00486-14. Epub 2014 May 2.


Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak.

Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR.

PLoS One. 2014 Apr 3;9(4):e86264. doi: 10.1371/journal.pone.0086264. eCollection 2014.


Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea.

Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin de Magny G, Chen AJ, Taviani E, Eliashvili T, Tediashvili M, Whitehouse CA, Colwell RR, Huq A.

Front Microbiol. 2014 Feb 10;5:45. doi: 10.3389/fmicb.2014.00045. eCollection 2014.


Genome Sequence of an Enterobacter helveticus Strain, 1159/04 (LMG 23733), Isolated from Fruit Powder.

Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Tall BD, Fanning S, Stephan R.

Genome Announc. 2013 Dec 12;1(6). pii: e01038-13. doi: 10.1128/genomeA.01038-13.


Genome Sequence of Enterobacter turicensis Strain 610/05 (LMG 23731), Isolated from Fruit Powder.

Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BD.

Genome Announc. 2013 Dec 26;1(6). pii: e00996-13. doi: 10.1128/genomeA.00996-13.


Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder.

Gopinath GR, Grim CJ, Tall BD, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Stephan R.

Genome Announc. 2013 Dec 5;1(6). pii: e00991-13. doi: 10.1128/genomeA.00991-13.


Identification of virulence properties in Salmonella Typhimurium DT104 using Caenorhabditis elegans.

Sahu SN, Anriany Y, Grim CJ, Kim S, Chang Z, Joseph SW, Cinar HN.

PLoS One. 2013 Oct 4;8(10):e76673. doi: 10.1371/journal.pone.0076673. eCollection 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/10611692-4e13-4c9f-8571-1a69d46628bd.


Complete genome sequence and phenotype microarray analysis of Cronobacter sakazakii SP291: a persistent isolate cultured from a powdered infant formula production facility.

Yan Q, Power KA, Cooney S, Fox E, Gopinath GR, Grim CJ, Tall BD, McCusker MP, Fanning S.

Front Microbiol. 2013 Sep 2;4:256. doi: 10.3389/fmicb.2013.00256. eCollection 2013.


Distribution of virulence genes in clinical and environmental Vibrio cholerae strains in Bangladesh.

Hasan NA, Ceccarelli D, Grim CJ, Taviani E, Choi J, Sadique A, Alam M, Siddique AK, Sack RB, Huq A, Colwell RR.

Appl Environ Microbiol. 2013 Sep;79(18):5782-5. doi: 10.1128/AEM.01113-13. Epub 2013 Jul 19.


Role of GbpA protein, an important virulence-related colonization factor, for Vibrio cholerae's survival in the aquatic environment.

Stauder M, Huq A, Pezzati E, Grim CJ, Ramoino P, Pane L, Colwell RR, Pruzzo C, Vezzulli L.

Environ Microbiol Rep. 2012 Aug;4(4):439-45. doi: 10.1111/j.1758-2229.2012.00356.x. Epub 2012 May 24.


Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation.

Grim CJ, Kotewicz ML, Power KA, Gopinath G, Franco AA, Jarvis KG, Yan QQ, Jackson SA, Sathyamoorthy V, Hu L, Pagotto F, Iversen C, Lehner A, Stephan R, Fanning S, Tall BD.

BMC Genomics. 2013 May 31;14:366. doi: 10.1186/1471-2164-14-366.


Characterization of Aeromonas hydrophila wound pathotypes by comparative genomic and functional analyses of virulence genes.

Grim CJ, Kozlova EV, Sha J, Fitts EC, van Lier CJ, Kirtley ML, Joseph SJ, Read TD, Burd EM, Tall BD, Joseph SW, Horneman AJ, Chopra AK, Shak JR.

MBio. 2013 Apr 23;4(2):e00064-13. doi: 10.1128/mBio.00064-13.


Identification and characterization of five new molecular serogroups of Cronobacter spp.

Jarvis KG, Yan QQ, Grim CJ, Power KA, Franco AA, Hu L, Gopinath G, Sathyamoorthy V, Kotewicz ML, Kothary MH, Lee C, Sadowski J, Fanning S, Tall BD.

Foodborne Pathog Dis. 2013 Apr;10(4):343-52. doi: 10.1089/fpd.2012.1344.


The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, Tall BD.

Food Microbiol. 2013 Jun;34(2):303-18. doi: 10.1016/ Epub 2013 Jan 23.


Vibrio cholerae in an Historically Cholera-Free Country.

Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA, Huq A, Colwell RR, Benediktsd├│ttir E.

Environ Microbiol Rep. 2012 Aug 1;4(4):381-389. Epub 2012 Mar 12.


Multiplex PCR assay targeting a diguanylate cyclase-encoding gene, cgcA, to differentiate species within the genus Cronobacter.

Carter L, Lindsey LA, Grim CJ, Sathyamoorthy V, Jarvis KG, Gopinath G, Lee C, Sadowski JA, Trach L, Pava-Ripoll M, McCardell BA, Tall BD, Hu L.

Appl Environ Microbiol. 2013 Jan;79(2):734-7. doi: 10.1128/AEM.02898-12. Epub 2012 Nov 9.


Identification and characterization of Cronobacter iron acquisition systems.

Grim CJ, Kothary MH, Gopinath G, Jarvis KG, Beaubrun JJ, McClelland M, Tall BD, Franco AA.

Appl Environ Microbiol. 2012 Sep;78(17):6035-50. doi: 10.1128/AEM.01457-12. Epub 2012 Jun 15.


Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus.

Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk AC, Tapia R, Green L, Detter C, Bruce DC, Brettin TS, Colwell RR, Morris PJ.

ISME J. 2012 Apr;6(4):835-46. doi: 10.1038/ismej.2011.154. Epub 2011 Dec 8.


Role of zooplankton diversity in Vibrio cholerae population dynamics and in the incidence of cholera in the Bangladesh Sundarbans.

de Magny GC, Mozumder PK, Grim CJ, Hasan NA, Naser MN, Alam M, Sack RB, Huq A, Colwell RR.

Appl Environ Microbiol. 2011 Sep;77(17):6125-32. doi: 10.1128/AEM.01472-10. Epub 2011 Jul 15.


Molecular characterization of Cronobacter lipopolysaccharide O-antigen gene clusters and development of serotype-specific PCR assays.

Jarvis KG, Grim CJ, Franco AA, Gopinath G, Sathyamoorthy V, Hu L, Sadowski JA, Lee CS, Tall BD.

Appl Environ Microbiol. 2011 Jun;77(12):4017-26. doi: 10.1128/AEM.00162-11. Epub 2011 Apr 29.


Characterization of putative virulence genes on the related RepFIB plasmids harbored by Cronobacter spp.

Franco AA, Hu L, Grim CJ, Gopinath G, Sathyamoorthy V, Jarvis KG, Lee C, Sadowski J, Kim J, Kothary MH, McCardell BA, Tall BD.

Appl Environ Microbiol. 2011 May;77(10):3255-67. doi: 10.1128/AEM.03023-10. Epub 2011 Mar 18.


Cpa, the outer membrane protease of Cronobacter sakazakii, activates plasminogen and mediates resistance to serum bactericidal activity.

Franco AA, Kothary MH, Gopinath G, Jarvis KG, Grim CJ, Hu L, Datta AR, McCardell BA, Tall BD.

Infect Immun. 2011 Apr;79(4):1578-87. doi: 10.1128/IAI.01165-10. Epub 2011 Jan 18.


Comparative genomics of clinical and environmental Vibrio mimicus.

Hasan NA, Grim CJ, Haley BJ, Chun J, Alam M, Taviani E, Hoq M, Munk AC, Saunders E, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Xie G, Nair GB, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):21134-9. doi: 10.1073/pnas.1013825107. Epub 2010 Nov 15.


Interaction of Vibrio cholerae non-O1/non-O139 with copepods, cladocerans and competing bacteria in the large alkaline lake Neusiedler See, Austria.

Kirschner AK, Schauer S, Steinberger B, Wilhartitz I, Grim CJ, Huq A, Colwell RR, Herzig A, Sommer R.

Microb Ecol. 2011 Apr;61(3):496-506. doi: 10.1007/s00248-010-9764-9. Epub 2010 Nov 4.


Discovery of novel Vibrio cholerae VSP-II genomic islands using comparative genomic analysis.

Taviani E, Grim CJ, Choi J, Chun J, Haley B, Hasan NA, Huq A, Colwell RR.

FEMS Microbiol Lett. 2010 Jul;308(2):130-7. doi: 10.1111/j.1574-6968.2010.02008.x. Epub 2010 May 6.


Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Haley BJ, Grim CJ, Hasan NA, Choi SY, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Colwell RR.

BMC Microbiol. 2010 May 27;10:154. doi: 10.1186/1471-2180-10-154.


Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae.

Grim CJ, Hasan NA, Taviani E, Haley B, Chun J, Brettin TS, Bruce DC, Detter JC, Han CS, Chertkov O, Challacombe J, Huq A, Nair GB, Colwell RR.

J Bacteriol. 2010 Jul;192(13):3524-33. doi: 10.1128/JB.00040-10. Epub 2010 Mar 26.


Occurrence of the Vibrio cholerae seventh pandemic VSP-I island and a new variant.

Grim CJ, Choi J, Chun J, Jeon YS, Taviani E, Hasan NA, Haley B, Huq A, Colwell RR.

OMICS. 2010 Feb;14(1):1-7. doi: 10.1089/omi.2009.0087.


The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir.

Haley BJ, Grim CJ, Hasan NA, Taviani E, Chun J, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Huq A, Nair GB, Colwell RR.

Environ Microbiol Rep. 2010 Feb;2(1):208-16. doi: 10.1111/j.1758-2229.2010.00141.x.


Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia.

Grim CJ, Jaiani E, Whitehouse CA, Janelidze N, Kokashvili T, Tediashvili M, Colwell RR, Huq A.

Environ Microbiol Rep. 2010 Feb;2(1):2-6. doi: 10.1111/j.1758-2229.2009.00073.x. Epub 2009 Sep 3.


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