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Items: 20

1.

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.

Rodríguez-Martín B, Palumbo E, Marco-Sola S, Griebel T, Ribeca P, Alonso G, Rastrojo A, Aguado B, Guigó R, Djebali S.

BMC Genomics. 2017 Jan 3;18(1):7. doi: 10.1186/s12864-016-3404-9.

2.

Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity.

Stuttmann J, Peine N, Garcia AV, Wagner C, Choudhury SR, Wang Y, James GV, Griebel T, Alcázar R, Tsuda K, Schneeberger K, Parker JE.

PLoS Genet. 2016 Apr 15;12(4):e1005990. doi: 10.1371/journal.pgen.1005990. eCollection 2016 Apr.

3.

NOD-like receptor cooperativity in effector-triggered immunity.

Griebel T, Maekawa T, Parker JE.

Trends Immunol. 2014 Nov;35(11):562-70. doi: 10.1016/j.it.2014.09.005. Epub 2014 Oct 9. Review.

PMID:
25308923
4.

Elevated salicylic acid levels conferred by increased expression of ISOCHORISMATE SYNTHASE 1 contribute to hyperaccumulation of SUMO1 conjugates in the Arabidopsis mutant early in short days 4.

Villajuana-Bonequi M, Elrouby N, Nordström K, Griebel T, Bachmair A, Coupland G.

Plant J. 2014 Jul;79(2):206-19. doi: 10.1111/tpj.12549. Epub 2014 Jun 23.

5.

RNA sequencing identifies dysregulation of the human pancreatic islet transcriptome by the saturated fatty acid palmitate.

Cnop M, Abdulkarim B, Bottu G, Cunha DA, Igoillo-Esteve M, Masini M, Turatsinze JV, Griebel T, Villate O, Santin I, Bugliani M, Ladriere L, Marselli L, McCarthy MI, Marchetti P, Sammeth M, Eizirik DL.

Diabetes. 2014 Jun;63(6):1978-93. doi: 10.2337/db13-1383. Epub 2013 Dec 30.

6.

Transcriptome and genome sequencing uncovers functional variation in humans.

Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzàlez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, Ribeca P, Pulyakhina I, Esser D, Giger T, Tikhonov A, Sultan M, Bertier G, MacArthur DG, Lek M, Lizano E, Buermans HP, Padioleau I, Schwarzmayr T, Karlberg O, Ongen H, Kilpinen H, Beltran S, Gut M, Kahlem K, Amstislavskiy V, Stegle O, Pirinen M, Montgomery SB, Donnelly P, McCarthy MI, Flicek P, Strom TM; Geuvadis Consortium, Lehrach H, Schreiber S, Sudbrak R, Carracedo A, Antonarakis SE, Häsler R, Syvänen AC, van Ommen GJ, Brazma A, Meitinger T, Rosenstiel P, Guigó R, Gut IG, Estivill X, Dermitzakis ET.

Nature. 2013 Sep 26;501(7468):506-11. doi: 10.1038/nature12531. Epub 2013 Sep 15.

7.

Reprogramming of plants during systemic acquired resistance.

Gruner K, Griebel T, Návarová H, Attaran E, Zeier J.

Front Plant Sci. 2013 Jul 15;4:252. doi: 10.3389/fpls.2013.00252. eCollection 2013.

8.

The role of Arabidopsis heterotrimeric G-protein subunits in MLO2 function and MAMP-triggered immunity.

Lorek J, Griebel T, Jones AM, Kuhn H, Panstruga R.

Mol Plant Microbe Interact. 2013 Sep;26(9):991-1003. doi: 10.1094/MPMI-03-13-0077-R.

9.

A TIR-NBS protein encoded by Arabidopsis Chilling Sensitive 1 (CHS1) limits chloroplast damage and cell death at low temperature.

Zbierzak AM, Porfirova S, Griebel T, Melzer M, Parker JE, Dörmann P.

Plant J. 2013 Aug;75(4):539-52. doi: 10.1111/tpj.12219. Epub 2013 May 22.

10.

Modelling and simulating generic RNA-Seq experiments with the flux simulator.

Griebel T, Zacher B, Ribeca P, Raineri E, Lacroix V, Guigó R, Sammeth M.

Nucleic Acids Res. 2012 Nov 1;40(20):10073-83. doi: 10.1093/nar/gks666. Epub 2012 Sep 7.

11.

Polynomial supertree methods revisited.

Brinkmeyer M, Griebel T, Böcker S.

Adv Bioinformatics. 2011;2011:524182. doi: 10.1155/2011/524182. Epub 2011 Dec 21.

12.

Data partitions, Bayesian analysis and phylogeny of the zygomycetous fungal family Mortierellaceae, inferred from nuclear ribosomal DNA sequences.

Petkovits T, Nagy LG, Hoffmann K, Wagner L, Nyilasi I, Griebel T, Schnabelrauch D, Vogel H, Voigt K, Vágvölgyi C, Papp T.

PLoS One. 2011;6(11):e27507. doi: 10.1371/journal.pone.0027507. Epub 2011 Nov 10.

13.

Cytokinins mediate resistance against Pseudomonas syringae in tobacco through increased antimicrobial phytoalexin synthesis independent of salicylic acid signaling.

Grosskinsky DK, Naseem M, Abdelmohsen UR, Plickert N, Engelke T, Griebel T, Zeier J, Novák O, Strnad M, Pfeifhofer H, van der Graaff E, Simon U, Roitsch T.

Plant Physiol. 2011 Oct;157(2):815-30. doi: 10.1104/pp.111.182931. Epub 2011 Aug 3.

14.

A role for beta-sitosterol to stigmasterol conversion in plant-pathogen interactions.

Griebel T, Zeier J.

Plant J. 2010 Jul;63(2):254-68. doi: 10.1111/j.1365-313X.2010.04235.x. Epub 2010 Apr 26.

15.

Unbiased transcriptional comparisons of generalist and specialist herbivores feeding on progressively defenseless Nicotiana attenuata plants.

Govind G, Mittapalli O, Griebel T, Allmann S, Böcker S, Baldwin IT.

PLoS One. 2010 Jan 15;5(1):e8735. doi: 10.1371/journal.pone.0008735.

16.

Methyl salicylate production and jasmonate signaling are not essential for systemic acquired resistance in Arabidopsis.

Attaran E, Zeier TE, Griebel T, Zeier J.

Plant Cell. 2009 Mar;21(3):954-71. doi: 10.1105/tpc.108.063164. Epub 2009 Mar 27.

17.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50.

18.

EPoS: a modular software framework for phylogenetic analysis.

Griebel T, Brinkmeyer M, Böcker S.

Bioinformatics. 2008 Oct 15;24(20):2399-400. doi: 10.1093/bioinformatics/btn364. Epub 2008 Jul 16.

PMID:
18632748
19.
20.

Panta rhei (QAlign2): an open graphical environment for sequence analysis.

Sammeth M, Griebel T, Tille F, Stoye J.

Bioinformatics. 2006 Apr 1;22(7):889-90. Epub 2006 Jan 17.

PMID:
16418234

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