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Expanding the scope and scale of microbiome research.

Knight R, Ley RE, Raes J, Grice EA.

Genome Biol. 2019 Sep 5;20(1):191. doi: 10.1186/s13059-019-1804-2. No abstract available.


Human macrophage response to microbial supernatants from diabetic foot ulcers.

Deusenbery CB, Kalan L, Meisel JS, Gardner SE, Grice EA, Spiller KL.

Wound Repair Regen. 2019 Nov;27(6):598-608. doi: 10.1111/wrr.12752. Epub 2019 Aug 10.


Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy.

Kalan LR, Meisel JS, Loesche MA, Horwinski J, Soaita I, Chen X, Uberoi A, Gardner SE, Grice EA.

Cell Host Microbe. 2019 May 8;25(5):641-655.e5. doi: 10.1016/j.chom.2019.03.006. Epub 2019 Apr 18.


Research Techniques Made Simple: Profiling the Skin Microbiota.

Grogan MD, Bartow-McKenney C, Flowers L, Knight SAB, Uberoi A, Grice EA.

J Invest Dermatol. 2019 Apr;139(4):747-752.e1. doi: 10.1016/j.jid.2019.01.024.


Fungi in the Wound Microbiome.

Kalan L, Grice EA.

Adv Wound Care (New Rochelle). 2018 Jul 1;7(7):247-255. doi: 10.1089/wound.2017.0756. Review.


HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.

Zheng Q, Bartow-McKenney C, Meisel JS, Grice EA.

Genome Biol. 2018 Jun 27;19(1):82. doi: 10.1186/s13059-018-1450-0.


The microbiota of traumatic, open fracture wounds is associated with mechanism of injury.

Bartow-McKenney C, Hannigan GD, Horwinski J, Hesketh P, Horan AD, Mehta S, Grice EA.

Wound Repair Regen. 2018 Mar;26(2):127-135. doi: 10.1111/wrr.12642. Epub 2018 Sep 20.


Antiseptic Agents Elicit Short-Term, Personalized, and Body Site-Specific Shifts in Resident Skin Bacterial Communities.

SanMiguel AJ, Meisel JS, Horwinski J, Zheng Q, Bradley CW, Grice EA.

J Invest Dermatol. 2018 Oct;138(10):2234-2243. doi: 10.1016/j.jid.2018.04.022. Epub 2018 May 9.


Severe pain during wound care procedures: A cross-sectional study protocol.

Fiala CA, Abbott LI, Carter CD, Hillis SL, Wolf JS, Schuster M, Dulski R, Grice EA, Rakel BA, Gardner SE.

J Adv Nurs. 2018 May 7. doi: 10.1111/jan.13699. [Epub ahead of print]


Longitudinal Study of the Psoriasis-Associated Skin Microbiome during Therapy with Ustekinumab in a Randomized Phase 3b Clinical Trial.

Loesche MA, Farahi K, Capone K, Fakharzadeh S, Blauvelt A, Duffin KC, DePrimo SE, Muñoz-Elías EJ, Brodmerkel C, Dasgupta B, Chevrier M, Smith K, Horwinski J, Tyldsley A, Grice EA.

J Invest Dermatol. 2018 Sep;138(9):1973-1981. doi: 10.1016/j.jid.2018.03.1501. Epub 2018 Mar 17.


Commensal microbiota modulate gene expression in the skin.

Meisel JS, Sfyroera G, Bartow-McKenney C, Gimblet C, Bugayev J, Horwinski J, Kim B, Brestoff JR, Tyldsley AS, Zheng Q, Hodkinson BP, Artis D, Grice EA.

Microbiome. 2018 Jan 30;6(1):20. doi: 10.1186/s40168-018-0404-9.


Host-microbe interactions: Malassezia and human skin.

Grice EA, Dawson TL 23⁎Jr.

Curr Opin Microbiol. 2017 Dec;40:81-87. doi: 10.1016/j.mib.2017.10.024. Epub 2017 Nov 12. Review.


The preadolescent acne microbiome: A prospective, randomized, pilot study investigating characterization and effects of acne therapy.

Coughlin CC, Swink SM, Horwinski J, Sfyroera G, Bugayev J, Grice EA, Yan AC.

Pediatr Dermatol. 2017 Nov;34(6):661-664. doi: 10.1111/pde.13261. Epub 2017 Oct 11.


Cutaneous Leishmaniasis Induces a Transmissible Dysbiotic Skin Microbiota that Promotes Skin Inflammation.

Gimblet C, Meisel JS, Loesche MA, Cole SD, Horwinski J, Novais FO, Misic AM, Bradley CW, Beiting DP, Rankin SC, Carvalho LP, Carvalho EM, Scott P, Grice EA.

Cell Host Microbe. 2017 Jul 12;22(1):13-24.e4. doi: 10.1016/j.chom.2017.06.006. Epub 2017 Jun 29.


Topical Antimicrobial Treatments Can Elicit Shifts to Resident Skin Bacterial Communities and Reduce Colonization by Staphylococcus aureus Competitors.

SanMiguel AJ, Meisel JS, Horwinski J, Zheng Q, Grice EA.

Antimicrob Agents Chemother. 2017 Aug 24;61(9). pii: e00774-17. doi: 10.1128/AAC.00774-17. Print 2017 Sep.


Cutaneous Burn Injury Promotes Shifts in the Bacterial Microbiome in Autologous Donor Skin: Implications for Skin Grafting Outcomes.

Plichta JK, Gao X, Lin H, Dong Q, Toh E, Nelson DE, Gamelli RL, Grice EA, Radek KA.

Shock. 2017 Oct;48(4):441-448. doi: 10.1097/SHK.0000000000000874.


Evolutionary and functional implications of hypervariable loci within the skin virome.

Hannigan GD, Zheng Q, Meisel JS, Minot SS, Bushman FD, Grice EA.

PeerJ. 2017 Feb 7;5:e2959. doi: 10.7717/peerj.2959. eCollection 2017.


Reply to "Understanding the Role of Fungi in Chronic Wounds".

Kalan L, Gardner SE, Grice EA.

mBio. 2016 Dec 6;7(6). pii: e02033-16. doi: 10.1128/mBio.02033-16. No abstract available.


Health Disparities and the Microbiome.

Findley K, Williams DR, Grice EA, Bonham VL.

Trends Microbiol. 2016 Nov;24(11):847-850. doi: 10.1016/j.tim.2016.08.001. Epub 2016 Oct 3.


Temporal Stability in Chronic Wound Microbiota Is Associated With Poor Healing.

Loesche M, Gardner SE, Kalan L, Horwinski J, Zheng Q, Hodkinson BP, Tyldsley AS, Franciscus CL, Hillis SL, Mehta S, Margolis DJ, Grice EA.

J Invest Dermatol. 2017 Jan;137(1):237-244. doi: 10.1016/j.jid.2016.08.009. Epub 2016 Aug 24.


AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.

Zheng Q, Grice EA.

PLoS Comput Biol. 2016 Oct 5;12(10):e1005096. doi: 10.1371/journal.pcbi.1005096. eCollection 2016 Oct.


Redefining the Chronic-Wound Microbiome: Fungal Communities Are Prevalent, Dynamic, and Associated with Delayed Healing.

Kalan L, Loesche M, Hodkinson BP, Heilmann K, Ruthel G, Gardner SE, Grice EA.

mBio. 2016 Sep 6;7(5). pii: e01058-16. doi: 10.1128/mBio.01058-16.


Glial-cell-derived neuroregulators control type 3 innate lymphoid cells and gut defence.

Ibiza S, García-Cassani B, Ribeiro H, Carvalho T, Almeida L, Marques R, Misic AM, Bartow-McKenney C, Larson DM, Pavan WJ, Eberl G, Grice EA, Veiga-Fernandes H.

Nature. 2016 Jul 21;535(7612):440-443. doi: 10.1038/nature18644. Epub 2016 Jul 13.


Longitudinal Evaluation of the Skin Microbiome and Association with Microenvironment and Treatment in Canine Atopic Dermatitis.

Bradley CW, Morris DO, Rankin SC, Cain CL, Misic AM, Houser T, Mauldin EA, Grice EA.

J Invest Dermatol. 2016 Jun;136(6):1182-1190. doi: 10.1016/j.jid.2016.01.023. Epub 2016 Feb 6.


Skin Microbiome Surveys Are Strongly Influenced by Experimental Design.

Meisel JS, Hannigan GD, Tyldsley AS, SanMiguel AJ, Hodkinson BP, Zheng Q, Grice EA.

J Invest Dermatol. 2016 May;136(5):947-956. doi: 10.1016/j.jid.2016.01.016. Epub 2016 Jan 29.


The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA.

mBio. 2015 Oct 20;6(5):e01578-15. doi: 10.1128/mBio.01578-15.


IL-22 Protects against Tissue Damage during Cutaneous Leishmaniasis.

Gimblet C, Loesche MA, Carvalho L, Carvalho EM, Grice EA, Artis D, Scott P.

PLoS One. 2015 Aug 18;10(8):e0134698. doi: 10.1371/journal.pone.0134698. eCollection 2015.


The shared microbiota of humans and companion animals as evaluated from Staphylococcus carriage sites.

Misic AM, Davis MF, Tyldsley AS, Hodkinson BP, Tolomeo P, Hu B, Nachamkin I, Lautenbach E, Morris DO, Grice EA.

Microbiome. 2015 Jan 23;3:2. doi: 10.1186/s40168-014-0052-7. eCollection 2015.


Current Concepts and Ongoing Research in the Prevention and Treatment of Open Fracture Infections.

Hannigan GD, Pulos N, Grice EA, Mehta S.

Adv Wound Care (New Rochelle). 2015 Jan 1;4(1):59-74. Review.


Next-Generation Sequencing: A Review of Technologies and Tools for Wound Microbiome Research.

Hodkinson BP, Grice EA.

Adv Wound Care (New Rochelle). 2015 Jan 1;4(1):50-58. Review.


Interactions between host factors and the skin microbiome.

SanMiguel A, Grice EA.

Cell Mol Life Sci. 2015 Apr;72(8):1499-515. doi: 10.1007/s00018-014-1812-z. Epub 2014 Dec 30. Review.


Complement deficiency promotes cutaneous wound healing in mice.

Rafail S, Kourtzelis I, Foukas PG, Markiewski MM, DeAngelis RA, Guariento M, Ricklin D, Grice EA, Lambris JD.

J Immunol. 2015 Feb 1;194(3):1285-91. doi: 10.4049/jimmunol.1402354. Epub 2014 Dec 29.


Ethnic/racial and genetic influences on cerumen odorant profiles.

Prokop-Prigge KA, Mansfield CJ, Parker MR, Thaler E, Grice EA, Wysocki CJ, Preti G.

J Chem Ecol. 2015 Jan;41(1):67-74. doi: 10.1007/s10886-014-0533-y. Epub 2014 Dec 13.


The skin microbiome: a focus on pathogens and their association with skin disease.

Findley K, Grice EA.

PLoS Pathog. 2014 Nov 13;10(10):e1004436. doi: 10.1371/journal.ppat.1004436. eCollection 2014 Oct. Review. No abstract available.


The Wound Microbiome: Modern Approaches to Examining the Role of Microorganisms in Impaired Chronic Wound Healing.

Misic AM, Gardner SE, Grice EA.

Adv Wound Care (New Rochelle). 2014 Jul 1;3(7):502-510. Review.


Culture-independent pilot study of microbiota colonizing open fractures and association with severity, mechanism, location, and complication from presentation to early outpatient follow-up.

Hannigan GD, Hodkinson BP, McGinnis K, Tyldsley AS, Anari JB, Horan AD, Grice EA, Mehta S.

J Orthop Res. 2014 Apr;32(4):597-605. doi: 10.1002/jor.22578. Epub 2014 Jan 3.


Microbial ecology of the skin in the era of metagenomics and molecular microbiology.

Hannigan GD, Grice EA.

Cold Spring Harb Perspect Med. 2013 Dec 1;3(12):a015362. doi: 10.1101/cshperspect.a015362. Review.


Complement modulates the cutaneous microbiome and inflammatory milieu.

Chehoud C, Rafail S, Tyldsley AS, Seykora JT, Lambris JD, Grice EA.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15061-6. doi: 10.1073/pnas.1307855110. Epub 2013 Aug 26.


The neuropathic diabetic foot ulcer microbiome is associated with clinical factors.

Gardner SE, Hillis SL, Heilmann K, Segre JA, Grice EA.

Diabetes. 2013 Mar;62(3):923-30. doi: 10.2337/db12-0771. Epub 2012 Nov 8.


The human microbiome: our second genome.

Grice EA, Segre JA.

Annu Rev Genomics Hum Genet. 2012;13:151-70. doi: 10.1146/annurev-genom-090711-163814. Epub 2012 Jun 6. Review.


Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis.

Kong HH, Oh J, Deming C, Conlan S, Grice EA, Beatson MA, Nomicos E, Polley EC, Komarow HD; NISC Comparative Sequence Program, Murray PR, Turner ML, Segre JA.

Genome Res. 2012 May;22(5):850-9. doi: 10.1101/gr.131029.111. Epub 2012 Feb 6.


Interaction of the microbiome with the innate immune response in chronic wounds.

Grice EA, Segre JA.

Adv Exp Med Biol. 2012;946:55-68. doi: 10.1007/978-1-4614-0106-3_4. Review.


The skin microbiome.

Grice EA, Segre JA.

Nat Rev Microbiol. 2011 Apr;9(4):244-53. doi: 10.1038/nrmicro2537. Review. Erratum in: Nat Rev Microbiol. 2011 Aug;9(8):626.


Longitudinal shift in diabetic wound microbiota correlates with prolonged skin defense response.

Grice EA, Snitkin ES, Yockey LJ, Bermudez DM; NISC Comparative Sequencing Program, Liechty KW, Segre JA.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14799-804. doi: 10.1073/pnas.1004204107. Epub 2010 Jul 28. Erratum in: Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17851.


Differential contributions of rare and common, coding and noncoding Ret mutations to multifactorial Hirschsprung disease liability.

Emison ES, Garcia-Barcelo M, Grice EA, Lantieri F, Amiel J, Burzynski G, Fernandez RM, Hao L, Kashuk C, West K, Miao X, Tam PK, Griseri P, Ceccherini I, Pelet A, Jannot AS, de Pontual L, Henrion-Caude A, Lyonnet S, Verheij JB, Hofstra RM, Antiñolo G, Borrego S, McCallion AS, Chakravarti A.

Am J Hum Genet. 2010 Jul 9;87(1):60-74. doi: 10.1016/j.ajhg.2010.06.007.


Topographical and temporal diversity of the human skin microbiome.

Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC; NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Murray PR, Green ED, Turner ML, Segre JA.

Science. 2009 May 29;324(5931):1190-2. doi: 10.1126/science.1171700.


Matriptase-deficient mice exhibit ichthyotic skin with a selective shift in skin microbiota.

Scharschmidt TC, List K, Grice EA, Szabo R; NISC Comparative Sequencing Program, Renaud G, Lee CC, Wolfsberg TG, Bugge TH, Segre JA.

J Invest Dermatol. 2009 Oct;129(10):2435-42. doi: 10.1038/jid.2009.104. Epub 2009 Apr 23.


A diversity profile of the human skin microbiota.

Grice EA, Kong HH, Renaud G, Young AC; NISC Comparative Sequencing Program, Bouffard GG, Blakesley RW, Wolfsberg TG, Turner ML, Segre JA.

Genome Res. 2008 Jul;18(7):1043-50. doi: 10.1101/gr.075549.107. Epub 2008 May 23.

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