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An archaeal origin of the Wood-Ljungdahl H4MPT branch and the emergence of bacterial methylotrophy.

Adam PS, Borrel G, Gribaldo S.

Nat Microbiol. 2019 Aug 26. doi: 10.1038/s41564-019-0534-2. [Epub ahead of print]


The SUF system: an ABC ATPase-dependent protein complex with a role in Fe-S cluster biogenesis.

Garcia PS, Gribaldo S, Py B, Barras F.

Res Microbiol. 2019 Aug 14. pii: S0923-2508(19)30085-3. doi: 10.1016/j.resmic.2019.08.001. [Epub ahead of print]


Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea.

Borrel G, Adam PS, McKay LJ, Chen LX, Sierra-García IN, Sieber CMK, Letourneur Q, Ghozlane A, Andersen GL, Li WJ, Hallam SJ, Muyzer G, de Oliveira VM, Inskeep WP, Banfield JF, Gribaldo S.

Nat Microbiol. 2019 Apr;4(4):603-613. doi: 10.1038/s41564-019-0363-3. Epub 2019 Mar 4.


Evolutionary placement of Methanonatronarchaeia.

Aouad M, Borrel G, Brochier-Armanet C, Gribaldo S.

Nat Microbiol. 2019 Apr;4(4):558-559. doi: 10.1038/s41564-019-0359-z. No abstract available.


Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes.

Adam PS, Borrel G, Gribaldo S.

Proc Natl Acad Sci U S A. 2018 Feb 6;115(6):E1166-E1173. doi: 10.1073/pnas.1716667115. Epub 2018 Jan 22. Erratum in: Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):E5836-E5837.


The growing tree of Archaea: new perspectives on their diversity, evolution and ecology.

Adam PS, Borrel G, Brochier-Armanet C, Gribaldo S.

ISME J. 2017 Nov;11(11):2407-2425. doi: 10.1038/ismej.2017.122. Epub 2017 Aug 4. Review.


Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome.

Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S.

Front Microbiol. 2017 Jun 30;8:1215. doi: 10.3389/fmicb.2017.01215. eCollection 2017.


Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi.

Gonçalves IR, Brouillet S, Soulié MC, Gribaldo S, Sirven C, Charron N, Boccara M, Choquer M.

BMC Evol Biol. 2016 Nov 24;16(1):252.


The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together.

Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP.

J Cell Sci. 2016 Oct 15;129(20):3695-3703. Epub 2016 Sep 26. Review.


Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes.

Antunes LC, Poppleton D, Klingl A, Criscuolo A, Dupuy B, Brochier-Armanet C, Beloin C, Gribaldo S.

Elife. 2016 Aug 31;5. pii: e14589. doi: 10.7554/eLife.14589.


Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association.

Borrel G, Adam PS, Gribaldo S.

Genome Biol Evol. 2016 Jun 13;8(6):1706-11. doi: 10.1093/gbe/evw114. Review.


Transcriptional Analysis and Subcellular Protein Localization Reveal Specific Features of the Essential WalKR System in Staphylococcus aureus.

Poupel O, Moyat M, Groizeleau J, Antunes LC, Gribaldo S, Msadek T, Dubrac S.

PLoS One. 2016 Mar 21;11(3):e0151449. doi: 10.1371/journal.pone.0151449. eCollection 2016.


Special section on Molecular biology of Archaea.

Prangishvili D, Gribaldo S, Franzetti B, Forterre P.

Biochimie. 2015 Nov;118:253. doi: 10.1016/j.biochi.2015.09.020. Epub 2015 Sep 25. No abstract available.


Paenibacillus faecis sp. nov., isolated from human faeces.

Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet C.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4621-6. doi: 10.1099/ijsem.0.000622. Epub 2015 Sep 18.


The Flagellar Arginine Kinase in Trypanosoma brucei Is Important for Infection in Tsetse Flies.

Ooi CP, Rotureau B, Gribaldo S, Georgikou C, Julkowska D, Blisnick T, Perrot S, Subota I, Bastin P.

PLoS One. 2015 Jul 28;10(7):e0133676. doi: 10.1371/journal.pone.0133676. eCollection 2015.


S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence.

Perras AK, Daum B, Ziegler C, Takahashi LK, Ahmed M, Wanner G, Klingl A, Leitinger G, Kolb-Lenz D, Gribaldo S, Auerbach A, Mora M, Probst AJ, Bellack A, Moissl-Eichinger C.

Front Microbiol. 2015 Jun 9;6:543. doi: 10.3389/fmicb.2015.00543. eCollection 2015.


The two-domain tree of life is linked to a new root for the Archaea.

Raymann K, Brochier-Armanet C, Gribaldo S.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):6670-5. doi: 10.1073/pnas.1420858112. Epub 2015 May 11.


Corrigendum to "unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette".

Borrel G, Gaci N, Peyret P, O'Toole PW, Gribaldo S, Brugère JF.

Archaea. 2015 Feb 2;2015:941836. doi: 10.1155/2015/941836. eCollection 2015.


Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface.

Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T, Wanner G, Klingl A, Berg IA, Yoshinaga M, Viehweger B, Hinrichs KU, Thomas BC, Meck S, Auerbach AK, Heise M, Schintlmeister A, Schmid M, Wagner M, Gribaldo S, Banfield JF, Moissl-Eichinger C.

Nat Commun. 2014 Nov 26;5:5497. doi: 10.1038/ncomms6497.


Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

Groussin M, Hobbs JK, Szöllősi GJ, Gribaldo S, Arcus VL, Gouy M.

Mol Biol Evol. 2015 Jan;32(1):13-22. doi: 10.1093/molbev/msu305. Epub 2014 Nov 4.


Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires' disease.

Gomez-Valero L, Rusniok C, Rolando M, Neou M, Dervins-Ravault D, Demirtas J, Rouy Z, Moore RJ, Chen H, Petty NK, Jarraud S, Etienne J, Steinert M, Heuner K, Gribaldo S, Médigue C, Glöckner G, Hartland EL, Buchrieser C.

Genome Biol. 2014;15(11):505.


The TET2 and TET3 aminopeptidases from Pyrococcus horikoshii form a hetero-subunit peptidasome with enhanced peptide destruction properties.

Appolaire A, Durá MA, Ferruit M, Andrieu JP, Godfroy A, Gribaldo S, Franzetti B.

Mol Microbiol. 2014 Nov;94(4):803-14. doi: 10.1111/mmi.12775. Epub 2014 Oct 7.


Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Borrel G, Parisot N, Harris HM, Peyretaillade E, Gaci N, Tottey W, Bardot O, Raymann K, Gribaldo S, Peyret P, O'Toole PW, Brugère JF.

BMC Genomics. 2014 Aug 13;15:679. doi: 10.1186/1471-2164-15-679.


Eukaryotic origins: How and when was the mitochondrion acquired?

Poole AM, Gribaldo S.

Cold Spring Harb Perspect Biol. 2014 Jul 18;6(12):a015990. doi: 10.1101/cshperspect.a015990. Review.


Deciphering the role of the chitin synthase families 1 and 2 in the in vivo and in vitro growth of Aspergillus fumigatus by multiple gene targeting deletion.

Muszkieta L, Aimanianda V, Mellado E, Gribaldo S, Alcàzar-Fuoli L, Szewczyk E, Prevost MC, Latgé JP.

Cell Microbiol. 2014 Dec;16(12):1784-805. doi: 10.1111/cmi.12326. Epub 2014 Aug 15.


Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette.

Borrel G, Gaci N, Peyret P, O'Toole PW, Gribaldo S, Brugère JF.

Archaea. 2014 Jan 27;2014:374146. doi: 10.1155/2014/374146. eCollection 2014. Erratum in: Archaea. 2015;2015:941836.


Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

Raymann K, Forterre P, Brochier-Armanet C, Gribaldo S.

Genome Biol Evol. 2014 Jan;6(1):192-212. doi: 10.1093/gbe/evu004.


Phylogenomic data support a seventh order of Methylotrophic methanogens and provide insights into the evolution of Methanogenesis.

Borrel G, O'Toole PW, Harris HM, Peyret P, Brugère JF, Gribaldo S.

Genome Biol Evol. 2013;5(10):1769-80. doi: 10.1093/gbe/evt128.


Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces.

Borrel G, Harris HM, Parisot N, Gaci N, Tottey W, Mihajlovski A, Deane J, Gribaldo S, Bardot O, Peyretaillade E, Peyret P, O'Toole PW, Brugère JF.

Genome Announc. 2013 Jul 11;1(4). pii: e00453-13. doi: 10.1128/genomeA.00453-13.


A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria.

Raymann K, Bobay LM, Doak TG, Lynch M, Gribaldo S.

G3 (Bethesda). 2013 Mar;3(3):505-16. doi: 10.1534/g3.112.005231. Epub 2013 Mar 1.


Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens.

Borrel G, Harris HM, Tottey W, Mihajlovski A, Parisot N, Peyretaillade E, Peyret P, Gribaldo S, O'Toole PW, Brugère JF.

J Bacteriol. 2012 Dec;194(24):6944-5. doi: 10.1128/JB.01867-12.


Time for order in microbial systematics.

Gribaldo S, Brochier-Armanet C.

Trends Microbiol. 2012 May;20(5):209-10. doi: 10.1016/j.tim.2012.02.006. Epub 2012 Mar 20. No abstract available.


Spotlight on the Thaumarchaeota.

Brochier-Armanet C, Gribaldo S, Forterre P.

ISME J. 2012 Feb;6(2):227-30. doi: 10.1038/ismej.2011.145. Epub 2011 Nov 10. No abstract available.


Crenarchaeal CdvA forms double-helical filaments containing DNA and interacts with ESCRT-III-like CdvB.

Moriscot C, Gribaldo S, Jault JM, Krupovic M, Arnaud J, Jamin M, Schoehn G, Forterre P, Weissenhorn W, Renesto P.

PLoS One. 2011;6(7):e21921. doi: 10.1371/journal.pone.0021921. Epub 2011 Jul 8.


Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments.

Halter D, Cordi A, Gribaldo S, Gallien S, Goulhen-Chollet F, Heinrich-Salmeron A, Carapito C, Pagnout C, Montaut D, Seby F, Van Dorsselaer A, Schaeffer C, Bertin PN, Bauda P, Arsène-Ploetze F.

Res Microbiol. 2011 Nov;162(9):877-87. doi: 10.1016/j.resmic.2011.06.001. Epub 2011 Jun 13.


Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria.

Criscuolo A, Gribaldo S.

Mol Biol Evol. 2011 Nov;28(11):3019-32. doi: 10.1093/molbev/msr108. Epub 2011 Jun 7.


Phylogeny and evolution of the Archaea: one hundred genomes later.

Brochier-Armanet C, Forterre P, Gribaldo S.

Curr Opin Microbiol. 2011 Jun;14(3):274-81. doi: 10.1016/j.mib.2011.04.015. Epub 2011 Jun 1. Review.


Phylogenetic and functional analysis of Aspergillus fumigatus MGTC, a fungal protein homologous to a bacterial virulence factor.

Gastebois A, Blanc Potard AB, Gribaldo S, Beau R, Latgé JP, Mouyna I.

Appl Environ Microbiol. 2011 Jul;77(13):4700-3. doi: 10.1128/AEM.00243-11. Epub 2011 May 20.


A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea.

Krupovic M, Spang A, Gribaldo S, Forterre P, Schleper C.

Biochem Soc Trans. 2011 Jan;39(1):82-8. doi: 10.1042/BST0390082.


Archaea and the tree of life.

Gribaldo S, Forterre P, Brochier-Armanet C.

Res Microbiol. 2011 Jan;162(1):1-4. doi: 10.1016/j.resmic.2010.11.007. Epub 2010 Dec 8. No abstract available.


Ribonucleotide reduction - horizontal transfer of a required function spans all three domains.

Lundin D, Gribaldo S, Torrents E, Sjöberg BM, Poole AM.

BMC Evol Biol. 2010 Dec 10;10:383. doi: 10.1186/1471-2148-10-383.


On the last common ancestor and early evolution of eukaryotes: reconstructing the history of mitochondrial ribosomes.

Desmond E, Brochier-Armanet C, Forterre P, Gribaldo S.

Res Microbiol. 2011 Jan;162(1):53-70. doi: 10.1016/j.resmic.2010.10.004. Epub 2010 Oct 27.


Evidence for a Xer/dif system for chromosome resolution in archaea.

Cortez D, Quevillon-Cheruel S, Gribaldo S, Desnoues N, Sezonov G, Forterre P, Serre MC.

PLoS Genet. 2010 Oct 21;6(10):e1001166. doi: 10.1371/journal.pgen.1001166.


The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

Gribaldo S, Poole AM, Daubin V, Forterre P, Brochier-Armanet C.

Nat Rev Microbiol. 2010 Oct;8(10):743-52. doi: 10.1038/nrmicro2426. Review.


Diversity of virus-host systems in hypersaline Lake Retba, Senegal.

Sime-Ngando T, Lucas S, Robin A, Tucker KP, Colombet J, Bettarel Y, Desmond E, Gribaldo S, Forterre P, Breitbart M, Prangishvili D.

Environ Microbiol. 2011 Aug;13(8):1956-72. doi: 10.1111/j.1462-2920.2010.02323.x. Epub 2010 Aug 25.


Bacteria with a eukaryotic touch: a glimpse of ancient evolution?

Forterre P, Gribaldo S.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12739-40. doi: 10.1073/pnas.1007720107. Epub 2010 Jul 12. No abstract available.


The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements.

Krupovic M, Gribaldo S, Bamford DH, Forterre P.

Mol Biol Evol. 2010 Dec;27(12):2716-32. doi: 10.1093/molbev/msq161. Epub 2010 Jun 25.


Geographic structuring of the Plasmodium falciparum sarco(endo)plasmic reticulum Ca2+ ATPase (PfSERCA) gene diversity.

Jambou R, Martinelli A, Pinto J, Gribaldo S, Legrand E, Niang M, Kim N, Pharath L, Volnay B, Ekala MT, Bouchier C, Fandeur T, Berzosa P, Benito A, Ferreira ID, Ferreira C, Vieira PP, Alecrim Md, Mercereau-Puijalon O, Cravo P.

PLoS One. 2010 Feb 25;5(2):e9424. doi: 10.1371/journal.pone.0009424.


An rpoB signature sequence provides unique resolution for the molecular typing of cyanobacteria.

Gaget V, Gribaldo S, Tandeau de Marsac N.

Int J Syst Evol Microbiol. 2011 Jan;61(Pt 1):170-83. doi: 10.1099/ijs.0.019018-0. Epub 2010 Feb 26.


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