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ESCMID/ESGMD postgraduate technical workshop on diagnostic microbiology.

Scherler A, Ardissone S, Moran-Gilad J, Greub G.

Microbes Infect. 2019 May 16. pii: S1286-4579(19)30053-X. doi: 10.1016/j.micinf.2019.04.006. [Epub ahead of print] No abstract available.


International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 5 July 2018, Woudschoten, Zeist, The Netherlands.

Borel N, Greub G.

Int J Syst Evol Microbiol. 2019 May 7. doi: 10.1099/ijsem.0.003418. [Epub ahead of print] No abstract available.


Evaluation of three consecutive versions of a commercial rapid PCR test to screen for methicillin-resistant Staphylococcus aureus.

Bulliard E, Grandbastien B, Senn L, Greub G, Blanc DS.

Clin Microbiol Infect. 2019 Apr 10. pii: S1198-743X(19)30150-8. doi: 10.1016/j.cmi.2019.03.029. [Epub ahead of print]


Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.

Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1696-1704. doi: 10.1099/ijsem.0.003378. Epub 2019 Apr 4.


Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship.

Pillonel T, Bertelli C, Aeby S, de Barsy M, Jacquier N, Kebbi-Beghdadi C, Mueller L, Vouga M, Greub G.

Genome Biol Evol. 2019 Apr 1;11(4):1334-1344. doi: 10.1093/gbe/evz072.


The rapid molecular test Xpert MTB/RIF ultra: towards improved tuberculosis diagnosis and rifampicin resistance detection.

Opota O, Mazza-Stalder J, Greub G, Jaton K.

Clin Microbiol Infect. 2019 Mar 28. pii: S1198-743X(19)30123-5. doi: 10.1016/j.cmi.2019.03.021. [Epub ahead of print] Review.


Identification of new DNA-associated proteins from Waddlia chondrophila.

Barsy M, Herrgott L, Martin V, Pillonel T, Viollier PH, Greub G.

Sci Rep. 2019 Mar 20;9(1):4885. doi: 10.1038/s41598-019-40732-1.


Whole-genome sequencing revealed independent emergence of vancomycin-resistant Enterococcus faecium causing sequential outbreaks over 3 years in a tertiary care hospital.

Abdelbary MHH, Senn L, Greub G, Chaillou G, Moulin E, Blanc DS.

Eur J Clin Microbiol Infect Dis. 2019 Jun;38(6):1163-1170. doi: 10.1007/s10096-019-03524-z. Epub 2019 Mar 19.


Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum.

Zakham F, Pillonel T, Brunel AS, Zambelli PY, Greub G, Croxatto A, Bertelli C.

Int J Infect Dis. 2019 Apr;81:167-169. doi: 10.1016/j.ijid.2019.02.001. Epub 2019 Feb 14.


Review of the impact of MALDI-TOF MS in public health and hospital hygiene, 2018.

Rodríguez-Sánchez B, Cercenado E, Coste AT, Greub G.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800193.


Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.

Seth-Smith HMB, Imkamp F, Tagini F, Cuénod A, Hömke R, Jahn K, Tschacher A, Grendelmeier P, Bättig V, Erb S, Reinhard M, Rütimann G, Borrell S, Gagneux S, Casanova C, Droz S, Osthoff M, Tamm M, Nübel U, Greub G, Keller PM, Egli A.

Front Microbiol. 2019 Jan 8;9:3184. doi: 10.3389/fmicb.2018.03184. eCollection 2018.


Indication of spatially random occurrence of Chlamydia-like organisms in Bufo bufo tadpoles from ponds located in the Geneva metropolitan area.

Vajana E, Widmer I, Rochat E, Duruz S, Selmoni O, Vuilleumier S, Aeby S, Greub G, Joost S.

New Microbes New Infect. 2018 Nov 27;27:54-63. doi: 10.1016/j.nmni.2018.11.006. eCollection 2019 Jan.


Diagnostic stewardship: are we using the right term?

Dyar OJ, Moran-Gilad J, Greub G, Pulcini C; ESGMD Executive Committee and the ESGAP Executive Committee.

Clin Microbiol Infect. 2019 Mar;25(3):272-273. doi: 10.1016/j.cmi.2018.12.011. Epub 2018 Dec 27. No abstract available.


Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I.

Swiss Med Wkly. 2018 Dec 15;148:w14693. doi: 10.4414/smw.2018.14693. eCollection 2018 Dec 3.


Added Value of Xpert MTB/RIF Ultra for Diagnosis of Pulmonary Tuberculosis in a Low-Prevalence Setting.

Opota O, Zakham F, Mazza-Stalder J, Nicod L, Greub G, Jaton K.

J Clin Microbiol. 2019 Jan 30;57(2). pii: e01717-18. doi: 10.1128/JCM.01717-18. Print 2019 Feb.


Antibodies to Chlamydia trachomatis and reproductive health issues in women with SLE: a case-control study.

Santos A, Greub G, Aeby S, Wunder D, Pantaleo G, Ribi C.

Lupus Sci Med. 2018 Nov 21;5(1):e000293. doi: 10.1136/lupus-2018-000293. eCollection 2018.


Prevalence of Anaplasma phagocytophilum and Coxiella burnetii in Ixodes ricinus ticks in Switzerland: an underestimated epidemiologic risk.

Pilloux L, Baumgartner A, Jaton K, Lienhard R, Ackermann-Gäumann R, Beuret C, Greub G.

New Microbes New Infect. 2018 Sep 6;27:22-26. doi: 10.1016/j.nmni.2018.08.017. eCollection 2019 Jan.


Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion.

Vidal S, Brandt BW, Dettwiler M, Abril C, Bressan J, Greub G, Frey CF, Perreten V, Rodriguez-Campos S.

Heliyon. 2018 Nov 5;4(11):e00915. doi: 10.1016/j.heliyon.2018.e00915. eCollection 2018 Nov.


Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms.

Bertelli C, Courtois S, Rosikiewicz M, Piriou P, Aeby S, Robert S, Loret JF, Greub G.

Front Microbiol. 2018 Oct 23;9:2520. doi: 10.3389/fmicb.2018.02520. eCollection 2018.


[Staphylococcus aureus producing Panton-Valentine leukocidin : notions in clinical practice].

Pérez S, Liaudet A, Favrat B, Cornuz J, Greub G.

Rev Med Suisse. 2018 Oct 31;14(625):1946-1950. French.


Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida.

Cenci U, Qiu H, Pillonel T, Cardol P, Remacle C, Colleoni C, Kadouche D, Chabi M, Greub G, Bhattacharya D, Ball SG.

Sci Rep. 2018 Oct 15;8(1):15243. doi: 10.1038/s41598-018-33663-w.


ESCCAR international congress on Rickettsiae and other intracellular bacteria.

Fournier PE, Kebbi-Beghdadi C, Greub G.

Microbes Infect. 2018 Aug - Sep;20(7-8):392-400. doi: 10.1016/j.micinf.2018.08.001. Epub 2018 Oct 10. No abstract available.


International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 7 September 2016, Oxford, UK.

Greub G, Bavoil P.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3683-3684. doi: 10.1099/ijsem.0.003049. Epub 2018 Oct 10. No abstract available.


[Chlamydial infections : epidemiology, pathogenesis, diagnosis and treatments].

Tagini F, Greub G.

Rev Med Suisse. 2018 Sep 12;14(618):1620-1625. French.


Male infertility: the intracellular bacterial hypothesis.

Stojanov M, Baud D, Greub G, Vulliemoz N.

New Microbes New Infect. 2018 Aug 22;26:37-41. doi: 10.1016/j.nmni.2018.08.012. eCollection 2018 Nov. Review.


Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae.

Taylor-Brown A, Pillonel T, Greub G, Vaughan L, Nowak B, Polkinghorne A.

Genome Biol Evol. 2018 Oct 1;10(10):2587-2595. doi: 10.1093/gbe/evy195.


International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 9 April 2017, Charlotte, USA.

Borel N, Bavoil P, Greub G, Horn M.

Int J Syst Evol Microbiol. 2018 Jan;68(1):3369-3370. doi: 10.1099/ijsem.0.003010. Epub 2018 Sep 7. No abstract available.


Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae Subsp. lausannense Subsp. nov.

Tagini F, Pillonel T, Croxatto A, Bertelli C, Koutsokera A, Lovis A, Greub G.

Front Microbiol. 2018 Aug 17;9:1743. doi: 10.3389/fmicb.2018.01743. eCollection 2018.


Chlamydia, rickettsia and other intracellular bacteria.

Greub G.

Microbes Infect. 2018 Aug - Sep;20(7-8):391. doi: 10.1016/j.micinf.2018.08.002. Epub 2018 Aug 23. No abstract available.


β-Klotho deficiency shifts the gut-liver bile acid axis and induces hepatic alterations in mice.

Somm E, Henry H, Bruce SJ, Bonnet N, Montandon SA, Niederländer NJ, Messina A, Aeby S, Rosikiewicz M, Fajas L, Sempoux C, Ferrari SL, Greub G, Pitteloud N.

Am J Physiol Endocrinol Metab. 2018 Nov 1;315(5):E833-E847. doi: 10.1152/ajpendo.00182.2018. Epub 2018 Jun 26.


Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.

Paul C, Bayrychenko Z, Junier T, Filippidou S, Beck K, Bueche M, Greub G, Bürgmann H, Junier P.

PeerJ. 2018 Jun 20;6:e4989. doi: 10.7717/peerj.4989. eCollection 2018.


Genome sequencing and functional characterization of the non-pathogenic Klebsiella pneumoniae KpGe bacteria.

Lima WC, Pillonel T, Bertelli C, Ifrid E, Greub G, Cosson P.

Microbes Infect. 2018 May;20(5):293-301. doi: 10.1016/j.micinf.2018.04.001. Epub 2018 May 10.


Detection of Chlamydiaceae and Chlamydia-like organisms on the ocular surface of children and adults from a trachoma-endemic region.

Ghasemian E, Inic-Kanada A, Collingro A, Tagini F, Stein E, Alchalabi H, Schuerer N, Keše D, Babiker BE, Borel N, Greub G, Barisani-Asenbauer T.

Sci Rep. 2018 May 9;8(1):7432. doi: 10.1038/s41598-018-23887-1.


What is the true clinical relevance of Simkania negevensis and other emerging Chlamydiales members?

Vouga M, Kebbi-Beghdadi C, Liénard J, Baskin L, Baud D, Greub G.

New Microbes New Infect. 2018 Jan 31;23:1-5. doi: 10.1016/j.nmni.2018.01.001. eCollection 2018 May.


Novel Chlamydia species isolated from snakes are temperature-sensitive and exhibit decreased susceptibility to azithromycin.

Staub E, Marti H, Biondi R, Levi A, Donati M, Leonard CA, Ley SD, Pillonel T, Greub G, Seth-Smith HMB, Borel N.

Sci Rep. 2018 Apr 4;8(1):5660. doi: 10.1038/s41598-018-23897-z.


Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.

Pillonel T, Bertelli C, Greub G.

Front Microbiol. 2018 Feb 20;9:79. doi: 10.3389/fmicb.2018.00079. eCollection 2018.


Chlamydiae in febrile children with respiratory tract symptoms and age-matched controls, Ghana.

Bühl H, Eibach D, Nagel M, Greub G, Borel N, Sarpong N, Rettig T, Pesch T, Aeby S, Klöckner A, Brunke M, Krannich S, Kreuels B, Owusu-Dabo E, Hogan B, May J, Henrichfreise B.

New Microbes New Infect. 2018 Jan 13;22:44-48. doi: 10.1016/j.nmni.2017.12.008. eCollection 2018 Mar.


Resistome Analysis of a Carbapenemase (OXA-48)-Producing and Colistin-Resistant Klebsiella pneumoniae Strain.

Pillonel T, Nordmann P, Bertelli C, Prod' Hom G, Poirel L, Greub G.

Antimicrob Agents Chemother. 2018 Apr 26;62(5). pii: e00076-18. doi: 10.1128/AAC.00076-18. Print 2018 May. No abstract available.


Towards automated detection, semi-quantification and identification of microbial growth in clinical bacteriology: A proof of concept.

Croxatto A, Marcelpoil R, Orny C, Morel D, Prod'hom G, Greub G.

Biomed J. 2017 Dec;40(6):317-328. doi: 10.1016/ Epub 2017 Dec 26.


Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix® RT-PCR.

Wagner K, Springer B, Imkamp F, Opota O, Greub G, Keller PM.

Int J Med Microbiol. 2018 Apr;308(3):317-323. doi: 10.1016/j.ijmm.2018.01.010. Epub 2018 Jan 31.


Evaluating the use of whole-genome sequencing for outbreak investigations in the lack of closely related reference genome.

Abdelbary MMH, Senn L, Moulin E, Prod'hom G, Croxatto A, Greub G, Blanc DS.

Infect Genet Evol. 2018 Apr;59:1-6. doi: 10.1016/j.meegid.2018.01.014. Epub 2018 Feb 2.


Tick-borne pathogen detection: what's new?

Cabezas-Cruz A, Vayssier-Taussat M, Greub G.

Microbes Infect. 2018 Aug - Sep;20(7-8):441-444. doi: 10.1016/j.micinf.2017.12.015. Epub 2018 Jan 9. Review.


A historical legacy of antibiotic utilization on bacterial seed banks in sediments.

Madueño L, Paul C, Junier T, Bayrychenko Z, Filippidou S, Beck K, Greub G, Bürgmann H, Junier P.

PeerJ. 2018 Jan 3;6:e4197. doi: 10.7717/peerj.4197. eCollection 2018.


Impact of HPV vaccination with Gardasil® in Switzerland.

Jacot-Guillarmod M, Pasquier J, Greub G, Bongiovanni M, Achtari C, Sahli R.

BMC Infect Dis. 2017 Dec 22;17(1):790. doi: 10.1186/s12879-017-2867-x.


Insight in the biology of Chlamydia-related bacteria.

Bayramova F, Jacquier N, Greub G.

Microbes Infect. 2018 Aug - Sep;20(7-8):432-440. doi: 10.1016/j.micinf.2017.11.008. Epub 2017 Dec 18. Review.


Culture-independent genome sequencing of Coxiella burnetii from a native heart valve of a Tunisian patient with severe infective endocarditis.

Delaloye J, Pillonel T, Smaoui M, Znazen A, Abid L, Greub G.

New Microbes New Infect. 2017 Oct 10;21:31-35. doi: 10.1016/j.nmni.2017.09.004. eCollection 2018 Jan.


Klebsiella pneumoniae co-producing KPC and RmtG, finally targeting Switzerland.

Mancini S, Poirel L, Corthesy M, Greub G, Nordmann P.

Diagn Microbiol Infect Dis. 2018 Feb;90(2):151-152. doi: 10.1016/j.diagmicrobio.2017.10.019. Epub 2017 Nov 6.


Blood lactose after dairy product intake in healthy men.

Pimentel G, Burton KJ, Rosikiewicz M, Freiburghaus C, von Ah U, Münger LH, Pralong FP, Vionnet N, Greub G, Badertscher R, Vergères G.

Br J Nutr. 2017 Dec;118(12):1070-1077. doi: 10.1017/S0007114517003245. Epub 2017 Dec 4.


Neglected zoonotic agents in cattle abortion: tackling the difficult to grow bacteria.

Vidal S, Kegler K, Greub G, Aeby S, Borel N, Dagleish MP, Posthaus H, Perreten V, Rodriguez-Campos S.

BMC Vet Res. 2017 Dec 2;13(1):373. doi: 10.1186/s12917-017-1294-y.


How to: identify non-tuberculous Mycobacterium species using MALDI-TOF mass spectrometry.

Alcaide F, Amlerová J, Bou G, Ceyssens PJ, Coll P, Corcoran D, Fangous MS, González-Álvarez I, Gorton R, Greub G, Hery-Arnaud G, Hrábak J, Ingebretsen A, Lucey B, Marekoviċ I, Mediavilla-Gradolph C, Monté MR, O'Connor J, O'Mahony J, Opota O, O'Reilly B, Orth-Höller D, Oviaño M, Palacios JJ, Palop B, Pranada AB, Quiroga L, Rodríguez-Temporal D, Ruiz-Serrano MJ, Tudó G, Van den Bossche A, van Ingen J, Rodriguez-Sanchez B; European Study Group on Genomics and Molecular Diagnosis (ESGMD).

Clin Microbiol Infect. 2018 Jun;24(6):599-603. doi: 10.1016/j.cmi.2017.11.012. Epub 2017 Nov 22. Review.

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