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Items: 1 to 20 of 33

1.

The Resource Identification Initiative: a cultural shift in publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N; RINL Resource Identification Initiative..

Brain Behav. 2015 Dec 8;6(1):e00417. doi: 10.1002/brb3.417.

2.

The FAIR Guiding Principles for scientific data management and stewardship.

Wilkinson MD, Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A, Blomberg N, Boiten JW, da Silva Santos LB, Bourne PE, Bouwman J, Brookes AJ, Clark T, Crosas M, Dillo I, Dumon O, Edmunds S, Evelo CT, Finkers R, Gonzalez-Beltran A, Gray AJ, Groth P, Goble C, Grethe JS, Heringa J, 't Hoen PA, Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL, Persson B, Rocca-Serra P, Roos M, van Schaik R, Sansone SA, Schultes E, Sengstag T, Slater T, Strawn G, Swertz MA, Thompson M, van der Lei J, van Mulligen E, Velterop J, Waagmeester A, Wittenburg P, Wolstencroft K, Zhao J, Mons B.

Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.

3.

Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature.

Ozyurt IB, Grethe JS, Martone ME, Bandrowski AE.

PLoS One. 2016 Jan 5;11(1):e0146300. doi: 10.1371/journal.pone.0146300.

4.

The Resource Identification Initiative: A Cultural Shift in Publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N.

J Comp Neurol. 2016 Jan 1;524(1):8-22. doi: 10.1002/cne.23913.

5.

The Resource Identification Initiative: A cultural shift in publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N; Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/members..

Version 2. F1000Res. 2015 May 29 [revised 2015 Jan 1];4:134. doi: 10.12688/f1000research.6555.2.

6.

The Resource Identification Initiative: A Cultural Shift in Publishing.

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N; RINL Resource Identification Initiative..

Neuroinformatics. 2016 Apr;14(2):169-82. doi: 10.1007/s12021-015-9284-3.

7.

The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases.

Whetzel PL, Grethe JS, Banks DE, Martone ME.

PLoS One. 2015 Sep 22;10(9):e0136206. doi: 10.1371/journal.pone.0136206.

8.

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.

Marenco LN, Wang R, Bandrowski AE, Grethe JS, Shepherd GM, Miller PL.

Front Neuroinform. 2014 May 28;8:58. doi: 10.3389/fninf.2014.00058.

9.

A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework.

Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME.

Int Rev Neurobiol. 2012;103:39-68. doi: 10.1016/B978-0-12-388408-4.00003-4. Review.

PMID:
23195120
10.

Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.

Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME.

Front Genet. 2012 Jun 22;3:111. doi: 10.3389/fgene.2012.00111.

11.

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.

Bandrowski AE, Cachat J, Li Y, Müller HM, Sternberg PW, Ciccarese P, Clark T, Marenco L, Wang R, Astakhov V, Grethe JS, Martone ME.

Database (Oxford). 2012 Mar 20;2012:bas005. doi: 10.1093/database/bas005.

12.

Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.

Morrison N, Hancock D, Hirschman L, Dawyndt P, Verslyppe B, Kyrpides N, Kottmann R, Yilmaz P, Glöckner FO, Grethe J, Booth T, Sterk P, Nenadic G, Field D.

Stand Genomic Sci. 2011 Apr 29;4(2):286-92. doi: 10.4056/sigs.1344279.

13.

XCEDE: an extensible schema for biomedical data.

Gadde S, Aucoin N, Grethe JS, Keator DB, Marcus DS, Pieper S; FBIRN, MBIRN, BIRN-CC..

Neuroinformatics. 2012 Jan;10(1):19-32. doi: 10.1007/s12021-011-9119-9.

14.

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource.

Sun S, Chen J, Li W, Altintas I, Lin A, Peltier S, Stocks K, Allen EE, Ellisman M, Grethe J, Wooley J.

Nucleic Acids Res. 2011 Jan;39(Database issue):D546-51. doi: 10.1093/nar/gkq1102.

15.

Federated web-accessible clinical data management within an extensible neuroimaging database.

Ozyurt IB, Keator DB, Wei D, Fennema-Notestine C, Pease KR, Bockholt J, Grethe JS.

Neuroinformatics. 2010 Dec;8(4):231-49. doi: 10.1007/s12021-010-9078-6.

16.

Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid.

Keator DB, Wei D, Gadde S, Bockholt J, Grethe JS, Marcus D, Aucoin N, Ozyurt IB.

Front Neuroinform. 2009 Sep 7;3:30. doi: 10.3389/neuro.11.030.2009.

17.

Mediator infrastructure for information integration and semantic data integration environment for biomedical research.

Grethe JS, Ross E, Little D, Sanders B, Gupta A, Astakhov V.

Methods Mol Biol. 2009;569:33-53. doi: 10.1007/978-1-59745-524-4_3.

PMID:
19623485
18.

Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data.

Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe JS, Gupta A, Kennedy DN, Rubin DL, Sanders B, Turner JA, Martone ME.

AMIA Annu Symp Proc. 2008 Nov 6:1220.

PMID:
18999211
19.

The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC).

Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K.

AMIA Annu Symp Proc. 2008 Nov 6:1000.

PMID:
18999128
20.

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME.

Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z.

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