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Items: 41

1.

Proteome-Wide, Structure-Based Prediction of Protein-protein Interactions / New Molecular Interactions Viewer.

Dong S, Lau V, Song R, Ierullo M, Esteban E, Wu Y, Sivieng T, Nahal-Bose HK, Gaudinier A, Pasha A, Oughtred R, Dolinski K, Tyers M, Brady SM, Grene R, Usadel B, Provart NJ.

Plant Physiol. 2019 Jan 24. pii: pp.01216.2018. doi: 10.1104/pp.18.01216. [Epub ahead of print]

2.

Identification of regulatory modules in genome scale transcription regulatory networks.

Song Q, Grene R, Heath LS, Li S.

BMC Syst Biol. 2017 Dec 15;11(1):140. doi: 10.1186/s12918-017-0493-2.

3.

Multilevel Regulation of Abiotic Stress Responses in Plants.

Haak DC, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, Li S.

Front Plant Sci. 2017 Sep 20;8:1564. doi: 10.3389/fpls.2017.01564. eCollection 2017. Review.

4.

Beacon Editor: Capturing Signal Transduction Pathways Using the Systems Biology Graphical Notation Activity Flow Language.

Elmarakeby H, Arefiyan M, Myers E, Li S, Grene R, Heath LS.

J Comput Biol. 2017 Dec;24(12):1226-1229. doi: 10.1089/cmb.2017.0095. Epub 2017 Aug 28.

PMID:
28846457
5.

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data.

Aghamirzaie D, Raja Velmurugan K, Wu S, Altarawy D, Heath LS, Grene R.

F1000Res. 2017 Mar 28;6:372. doi: 10.12688/f1000research.10041.1. eCollection 2017.

6.

A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis.

Ni Y, Aghamirzaie D, Elmarakeby H, Collakova E, Li S, Grene R, Heath LS.

Front Plant Sci. 2016 Dec 23;7:1936. doi: 10.3389/fpls.2016.01936. eCollection 2016.

7.

CoSpliceNet: a framework for co-splicing network inference from transcriptomics data.

Aghamirzaie D, Collakova E, Li S, Grene R.

BMC Genomics. 2016 Oct 28;17(1):845.

8.

Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos.

Schneider A, Aghamirzaie D, Elmarakeby H, Poudel AN, Koo AJ, Heath LS, Grene R, Collakova E.

Plant J. 2016 Jan;85(2):305-19. doi: 10.1111/tpj.13106.

9.

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.

Aghamirzaie D, Batra D, Heath LS, Schneider A, Grene R, Collakova E.

BMC Genomics. 2015 Nov 14;16:928. doi: 10.1186/s12864-015-2108-x.

10.
11.

Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce.

Collakova E, Klumas C, Suren H, Myers E, Heath LS, Holliday JA, Grene R.

BMC Plant Biol. 2013 Apr 30;13:72. doi: 10.1186/1471-2229-13-72.

12.

Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos.

Collakova E, Aghamirzaie D, Fang Y, Klumas C, Tabataba F, Kakumanu A, Myers E, Heath LS, Grene R.

Metabolites. 2013 May 14;3(2):347-72. doi: 10.3390/metabo3020347.

13.

Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos.

Aghamirzaie D, Nabiyouni M, Fang Y, Klumas C, Heath LS, Grene R, Collakova E.

Biology (Basel). 2013 Nov 21;2(4):1311-37. doi: 10.3390/biology2041311.

14.

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis).

Grene R, Klumas C, Suren H, Yang K, Collakova E, Myers E, Heath LS, Holliday JA.

Front Plant Sci. 2012 Oct 29;3:241. doi: 10.3389/fpls.2012.00241. eCollection 2012.

15.

Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq.

Kakumanu A, Ambavaram MM, Klumas C, Krishnan A, Batlang U, Myers E, Grene R, Pereira A.

Plant Physiol. 2012 Oct;160(2):846-67. doi: 10.1104/pp.112.200444. Epub 2012 Jul 26.

16.

Mining for meaning: visualization approaches to deciphering Arabidopsis stress responses in roots and shoots.

Zhou L, Franck C, Yang K, Pilot G, Heath LS, Grene R.

OMICS. 2012 Apr;16(4):208-28. doi: 10.1089/omi.2011.0111. Epub 2012 Mar 14.

PMID:
22416883
17.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D.

Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.

18.

Differential expression of heat shock protein genes in preconditioning for photosynthetic acclimation in water-stressed loblolly pine.

Vásquez-Robinet C, Watkinson JI, Sioson AA, Ramakrishnan N, Heath LS, Grene R.

Plant Physiol Biochem. 2010 Apr;48(4):256-64. doi: 10.1016/j.plaphy.2009.12.005. Epub 2010 Feb 1.

PMID:
20171112
19.

Studying the functional genomics of stress responses in loblolly pine with the Expresso microarray experiment management system.

Heath LS, Ramakrishnan N, Sederoff RR, Whetten RW, Chevone BI, Struble CA, Jouenne VY, Chen D, van Zyl L, Grene R.

Comp Funct Genomics. 2002;3(3):226-43. doi: 10.1002/cfg.169.

20.

Physiological and molecular adaptations to drought in Andean potato genotypes.

Vasquez-Robinet C, Mane SP, Ulanov AV, Watkinson JI, Stromberg VK, De Koeyer D, Schafleitner R, Willmot DB, Bonierbale M, Bohnert HJ, Grene R.

J Exp Bot. 2008;59(8):2109-23. doi: 10.1093/jxb/ern073.

21.

Tuber development phenotypes in adapted and acclimated, drought-stressed Solanum tuberosum ssp. andigena have distinct expression profiles of genes associated with carbon metabolism.

Watkinson JI, Hendricks L, Sioson AA, Heath LS, Bohnert HJ, Grene R.

Plant Physiol Biochem. 2008 Jan;46(1):34-45. Epub 2007 Oct 26.

PMID:
18061466
22.

All about FACE--plants in a high-[CO2] world.

Li P, Bohnert HJ, Grene R.

Trends Plant Sci. 2007 Mar;12(3):87-9. Epub 2007 Feb 5. No abstract available.

PMID:
17280863
23.

Early PLDalpha-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis.

Mane SP, Vasquez-Robinet C, Sioson AA, Heath LS, Grene R.

J Exp Bot. 2007;58(2):241-52.

PMID:
17261695
24.

Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila.

Li P, Mane SP, Sioson AA, Robinet CV, Heath LS, Bohnert HJ, Grene R.

Plant Cell Environ. 2006 May;29(5):854-68. Erratum in: Plant Cell Environ. 2006 Jul;29(7):1460-1.

25.

Response diversity of Arabidopsis thaliana ecotypes in elevated [CO2] in the field.

Li P, Sioson A, Mane SP, Ulanov A, Grothaus G, Heath LS, Murali TM, Bohnert HJ, Grene R.

Plant Mol Biol. 2006 Nov;62(4-5):593-609. Epub 2006 Aug 29.

PMID:
16941220
26.

XcisClique: analysis of regulatory bicliques.

Pati A, Vasquez-Robinet C, Heath LS, Grene R, Murali TM.

BMC Bioinformatics. 2006 Apr 21;7:218.

27.

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.

Sioson AA, Mane SP, Li P, Sha W, Heath LS, Bohnert HJ, Grene R.

BMC Bioinformatics. 2006 Apr 20;7:215.

28.

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine.

Watkinson JI, Sioson AA, Vasquez-Robinet C, Shukla M, Kumar D, Ellis M, Heath LS, Ramakrishnan N, Chevone B, Watson LT, van Zyl L, Egertsdotter U, Sederoff RR, Grene R.

Plant Physiol. 2003 Dec;133(4):1702-16.

29.

Oxidative stress and acclimation mechanisms in plants.

Grene R.

Arabidopsis Book. 2002;1:e0036. doi: 10.1199/tab.0036.1. Epub 2002 Apr 4. No abstract available.

30.

Lasso procedure to revise overcorrection with radial keratotomy.

Miyashiro MJ, Yee RW, Patel G, Karas Y, Grene RB.

Am J Ophthalmol. 1998 Dec;126(6):825-7.

PMID:
9860008
31.

Comanagement: a word used to hide collusion.

Grene RB.

Ophthalmic Surg Lasers. 1998 Jan;29(1):12-4. No abstract available.

PMID:
9527437
32.
33.

Astigmatism reduction clinical trial: a multicenter prospective evaluation of the predictability of arcuate keratotomy. Evaluation of surgical nomogram predictability. ARC-T Study Group.

Price FW, Grene RB, Marks RG, Gonzales JS.

Arch Ophthalmol. 1995 Mar;113(3):277-82. Erratum in: Arch Ophthalmol 1995 May;113(5):577.

PMID:
7887839
34.

Unpreserved carboxymethylcellulose artificial tears evaluated in patients with keratoconjunctivitis sicca.

Grene RB, Lankston P, Mordaunt J, Harrold M, Gwon A, Jones R.

Cornea. 1992 Jul;11(4):294-301.

PMID:
1424648
35.

Conjunctival pleating and keratoconjunctivitis sicca.

Grene RB.

Cornea. 1991 Jul;10(4):367-8. No abstract available.

PMID:
1889225
36.

Cartography of impression cytology.

Grene RB, Lankston P.

Cornea. 1990 Oct;9(4):275-8.

PMID:
2078955
37.

The importance of corneal asphericity and irregular astigmatism in refractive surgery.

Nordan LT, Grene RB.

Refract Corneal Surg. 1990 May-Jun;6(3):200-4. No abstract available.

PMID:
2248929
38.

Use of the YAG laser to open a dense fibrovascular pupillary membrane.

Grene RB.

Ophthalmic Surg. 1990 Mar;21(3):159-60. No abstract available.

PMID:
2348956
39.

The anchor suture for securing loosened, continuous sutures in penetrating keratoplasty.

Kenyon KR, Grene RB.

Refract Corneal Surg. 1989 Jul-Aug;5(4):268-70.

PMID:
2488818
40.

Postoperative management of epikeratoplasty.

Steinert RF, Grene RB.

J Cataract Refract Surg. 1988 May;14(3):255-64.

PMID:
3294378
41.

Sensitization of bleached Stentor to far UV.

Burchill BR, Bordy M, Grene RB.

Eur J Cell Biol. 1979 Oct;20(1):1-6.

PMID:
118009

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