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Editorial: Microbial Hydrogen Metabolism.

Greening C, Boyd E.

Front Microbiol. 2020 Jan 30;11:56. doi: 10.3389/fmicb.2020.00056. eCollection 2020. No abstract available.


Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering.

Lee BM, Harold LK, Almeida DV, Afriat-Jurnou L, Aung HL, Forde BM, Hards K, Pidot SJ, Ahmed FH, Mohamed AE, Taylor MC, West NP, Stinear TP, Greening C, Beatson SA, Nuermberger EL, Cook GM, Jackson CJ.

PLoS Pathog. 2020 Feb 7;16(2):e1008287. doi: 10.1371/journal.ppat.1008287. eCollection 2020 Feb.


Molecular Hydrogen Metabolism: a Widespread Trait of Pathogenic Bacteria and Protists.

Benoit SL, Maier RJ, Sawers RG, Greening C.

Microbiol Mol Biol Rev. 2020 Jan 29;84(1). pii: e00092-19. doi: 10.1128/MMBR.00092-19. Print 2020 Feb 19. Review.


Putative Iron-Sulfur Proteins Are Required for Hydrogen Consumption and Enhance Survival of Mycobacteria.

Islam ZF, Cordero PRF, Greening C.

Front Microbiol. 2019 Nov 22;10:2749. doi: 10.3389/fmicb.2019.02749. eCollection 2019.


Two uptake hydrogenases differentially interact with the aerobic respiratory chain during mycobacterial growth and persistence.

Cordero PRF, Grinter R, Hards K, Cryle MJ, Warr CG, Cook GM, Greening C.

J Biol Chem. 2019 Dec 13;294(50):18980-18991. doi: 10.1074/jbc.RA119.011076. Epub 2019 Oct 17.


Protease-associated import systems are widespread in Gram-negative bacteria.

Grinter R, Leung PM, Wijeyewickrema LC, Littler D, Beckham S, Pike RN, Walker D, Greening C, Lithgow T.

PLoS Genet. 2019 Oct 15;15(10):e1008435. doi: 10.1371/journal.pgen.1008435. eCollection 2019 Oct.


Plumage redness signals mitochondrial function in the house finch.

Hill GE, Hood WR, Ge Z, Grinter R, Greening C, Johnson JD, Park NR, Taylor HA, Andreasen VA, Powers MJ, Justyn NM, Parry HA, Kavazis AN, Zhang Y.

Proc Biol Sci. 2019 Sep 25;286(1911):20191354. doi: 10.1098/rspb.2019.1354. Epub 2019 Sep 25.


Hydrogen Oxidation Influences Glycogen Accumulation in a Verrucomicrobial Methanotroph.

Carere CR, McDonald B, Peach HA, Greening C, Gapes DJ, Collet C, Stott MB.

Front Microbiol. 2019 Aug 16;10:1873. doi: 10.3389/fmicb.2019.01873. eCollection 2019.


Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival.

Cordero PRF, Bayly K, Man Leung P, Huang C, Islam ZF, Schittenhelm RB, King GM, Greening C.

ISME J. 2019 Nov;13(11):2868-2881. doi: 10.1038/s41396-019-0479-8. Epub 2019 Jul 29.


Diverse hydrogen production and consumption pathways influence methane production in ruminants.

Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI.

ISME J. 2019 Oct;13(10):2617-2632. doi: 10.1038/s41396-019-0464-2. Epub 2019 Jun 26.


Uncovering the Metabolic Strategies of the Dormant Microbial Majority: towards Integrative Approaches.

Greening C, Grinter R, Chiri E.

mSystems. 2019 May 14;4(3). pii: e00107-19. doi: 10.1128/mSystems.00107-19.


Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments.

Dong X, Greening C, Rattray JE, Chakraborty A, Chuvochina M, Mayumi D, Dolfing J, Li C, Brooks JM, Bernard BB, Groves RA, Lewis IA, Hubert CRJ.

Nat Commun. 2019 Apr 18;10(1):1816. doi: 10.1038/s41467-019-09747-0.


A revised biosynthetic pathway for the cofactor F420 in prokaryotes.

Bashiri G, Antoney J, Jirgis ENM, Shah MV, Ney B, Copp J, Stuteley SM, Sreebhavan S, Palmer B, Middleditch M, Tokuriki N, Greening C, Scott C, Baker EN, Jackson CJ.

Nat Commun. 2019 Apr 5;10(1):1558. doi: 10.1038/s41467-019-09534-x.


Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism.

Spang A, Stairs CW, Dombrowski N, Eme L, Lombard J, Caceres EF, Greening C, Baker BJ, Ettema TJG.

Nat Microbiol. 2019 Jul;4(7):1138-1148. doi: 10.1038/s41564-019-0406-9. Epub 2019 Apr 1.


Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide.

Islam ZF, Cordero PRF, Feng J, Chen YJ, Bay SK, Jirapanjawat T, Gleadow RM, Carere CR, Stott MB, Chiri E, Greening C.

ISME J. 2019 Jul;13(7):1801-1813. doi: 10.1038/s41396-019-0393-0. Epub 2019 Mar 14.


Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments.

Kessler AJ, Chen YJ, Waite DW, Hutchinson T, Koh S, Popa ME, Beardall J, Hugenholtz P, Cook PLM, Greening C.

Nat Microbiol. 2019 Jun;4(6):1014-1023. doi: 10.1038/s41564-019-0391-z. Epub 2019 Mar 11.


Assessing the fitness consequences of mitonuclear interactions in natural populations.

Hill GE, Havird JC, Sloan DB, Burton RS, Greening C, Dowling DK.

Biol Rev Camb Philos Soc. 2019 Jun;94(3):1089-1104. doi: 10.1111/brv.12493. Epub 2018 Dec 26.


FAD-sequestering proteins protect mycobacteria against hypoxic and oxidative stress.

Harold LK, Antoney J, Ahmed FH, Hards K, Carr PD, Rapson T, Greening C, Jackson CJ, Cook GM.

J Biol Chem. 2019 Feb 22;294(8):2903-2912. doi: 10.1074/jbc.RA118.006237. Epub 2018 Dec 19.


The Effect of Set Up Position on EMG Amplitude, Lumbar Spine Kinetics, and Total Force Output During Maximal Isometric Conventional-Stance Deadlifts.

Edington C, Greening C, Kmet N, Philipenko N, Purves L, Stevens J, Lanovaz J, Butcher S.

Sports (Basel). 2018 Aug 31;6(3). pii: E90. doi: 10.3390/sports6030090.


Concordant divergence of mitogenomes and a mitonuclear gene cluster in bird lineages inhabiting different climates.

Morales HE, Pavlova A, Amos N, Major R, Kilian A, Greening C, Sunnucks P.

Nat Ecol Evol. 2018 Aug;2(8):1258-1267. doi: 10.1038/s41559-018-0606-3. Epub 2018 Jul 9.


Respiratory depression in low acuity hospital settings-Seeking answers from the PRODIGY trial.

Khanna AK, Overdyk FJ, Greening C, Di Stefano P, Buhre WF.

J Crit Care. 2018 Oct;47:80-87. doi: 10.1016/j.jcrc.2018.06.014. Epub 2018 Jun 18. Review.


Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats.

Dong X, Greening C, Brüls T, Conrad R, Guo K, Blaskowski S, Kaschani F, Kaiser M, Laban NA, Meckenstock RU.

ISME J. 2018 Aug;12(8):2039-2050. doi: 10.1038/s41396-018-0148-3. Epub 2018 May 30.


Coupling between Nitrogen Fixation and Tetrachlorobiphenyl Dechlorination in a Rhizobium-Legume Symbiosis.

Wang X, Teng Y, Tu C, Luo Y, Greening C, Zhang N, Dai S, Ren W, Zhao L, Li Z.

Environ Sci Technol. 2018 Feb 20;52(4):2217-2224. doi: 10.1021/acs.est.7b05667. Epub 2018 Feb 5.


Climate-driven mitochondrial selection: A test in Australian songbirds.

Lamb AM, Gan HM, Greening C, Joseph L, Lee YP, Morán-Ordóñez A, Sunnucks P, Pavlova A.

Mol Ecol. 2018 Feb;27(4):898-918. doi: 10.1111/mec.14488. Epub 2018 Feb 12.


Atmospheric trace gases support primary production in Antarctic desert surface soil.

Ji M, Greening C, Vanwonterghem I, Carere CR, Bay SK, Steen JA, Montgomery K, Lines T, Beardall J, van Dorst J, Snape I, Stott MB, Hugenholtz P, Ferrari BC.

Nature. 2017 Dec 21;552(7685):400-403. doi: 10.1038/nature25014. Epub 2017 Dec 6.


Population mitogenomics provides insights into evolutionary history, source of invasions and diversifying selection in the House Crow (Corvus splendens).

Krzemińska U, Morales HE, Greening C, Nyári ÁS, Wilson R, Song BK, Austin CM, Sunnucks P, Pavlova A, Rahman S.

Heredity (Edinb). 2018 Apr;120(4):296-309. doi: 10.1038/s41437-017-0020-7. Epub 2017 Nov 28.


Cofactor Tail Length Modulates Catalysis of Bacterial F420-Dependent Oxidoreductases.

Ney B, Carere CR, Sparling R, Jirapanjawat T, Stott MB, Jackson CJ, Oakeshott JG, Warden AC, Greening C.

Front Microbiol. 2017 Sep 27;8:1902. doi: 10.3389/fmicb.2017.01902. eCollection 2017.


Mixotrophy drives niche expansion of verrucomicrobial methanotrophs.

Carere CR, Hards K, Houghton KM, Power JF, McDonald B, Collet C, Gapes DJ, Sparling R, Boyd ES, Cook GM, Greening C, Stott MB.

ISME J. 2017 Nov;11(11):2599-2610. doi: 10.1038/ismej.2017.112. Epub 2017 Aug 4.


Mycobacterial F420H2-Dependent Reductases Promiscuously Reduce Diverse Compounds through a Common Mechanism.

Greening C, Jirapanjawat T, Afroze S, Ney B, Scott C, Pandey G, Lee BM, Russell RJ, Jackson CJ, Oakeshott JG, Taylor MC, Warden AC.

Front Microbiol. 2017 May 31;8:1000. doi: 10.3389/fmicb.2017.01000. eCollection 2017.


Oxidative Phosphorylation as a Target Space for Tuberculosis: Success, Caution, and Future Directions.

Cook GM, Hards K, Dunn E, Heikal A, Nakatani Y, Greening C, Crick DC, Fontes FL, Pethe K, Hasenoehrl E, Berney M.

Microbiol Spectr. 2017 Jun;5(3). doi: 10.1128/microbiolspec.TBTB2-0014-2016. Review.


Integrative Approaches for Studying Mitochondrial and Nuclear Genome Co-evolution in Oxidative Phosphorylation.

Sunnucks P, Morales HE, Lamb AM, Pavlova A, Greening C.

Front Genet. 2017 Mar 3;8:25. doi: 10.3389/fgene.2017.00025. eCollection 2017.


Metabolism in anoxic permeable sediments is dominated by eukaryotic dark fermentation.

Bourke MF, Marriott PJ, Glud RN, Hasler-Sheetal H, Kamalanathan M, Beardall J, Greening C, Cook PL.

Nat Geosci. 2017 Jan;10(1):30-35. doi: 10.1038/ngeo2843. Epub 2016 Nov 28.


HydDB: A web tool for hydrogenase classification and analysis.

Søndergaard D, Pedersen CN, Greening C.

Sci Rep. 2016 Sep 27;6:34212. doi: 10.1038/srep34212.


The Redox Cofactor F420 Protects Mycobacteria from Diverse Antimicrobial Compounds and Mediates a Reductive Detoxification System.

Jirapanjawat T, Ney B, Taylor MC, Warden AC, Afroze S, Russell RJ, Lee BM, Jackson CJ, Oakeshott JG, Pandey G, Greening C.

Appl Environ Microbiol. 2016 Dec 1;82(23):6810-6818. doi: 10.1128/AEM.02500-16. Epub 2016 Sep 16.


The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria.

Ney B, Ahmed FH, Carere CR, Biswas A, Warden AC, Morales SE, Pandey G, Watt SJ, Oakeshott JG, Taylor MC, Stott MB, Jackson CJ, Greening C.

ISME J. 2017 Jan;11(1):125-137. doi: 10.1038/ismej.2016.100. Epub 2016 Aug 9.


H2 metabolism is widespread and diverse among human colonic microbes.

Wolf PG, Biswas A, Morales SE, Greening C, Gaskins HR.

Gut Microbes. 2016 May 3;7(3):235-45. doi: 10.1080/19490976.2016.1182288.


Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions.

Greening C, Ahmed FH, Mohamed AE, Lee BM, Pandey G, Warden AC, Scott C, Oakeshott JG, Taylor MC, Jackson CJ.

Microbiol Mol Biol Rev. 2016 Apr 27;80(2):451-93. doi: 10.1128/MMBR.00070-15. Print 2016 Jun. Review.


Atmospheric H2 fuels plant-microbe interactions.

Greening C, Maier RJ.

Environ Microbiol. 2016 Sep;18(8):2289-91. doi: 10.1111/1462-2920.13137. Epub 2016 Jan 18. No abstract available.


Sequence-Structure-Function Classification of a Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria.

Ahmed FH, Carr PD, Lee BM, Afriat-Jurnou L, Mohamed AE, Hong NS, Flanagan J, Taylor MC, Greening C, Jackson CJ.

J Mol Biol. 2015 Nov 6;427(22):3554-3571. doi: 10.1016/j.jmb.2015.09.021. Epub 2015 Oct 3.


Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival.

Greening C, Biswas A, Carere CR, Jackson CJ, Taylor MC, Stott MB, Cook GM, Morales SE.

ISME J. 2016 Mar;10(3):761-77. doi: 10.1038/ismej.2015.153. Epub 2015 Sep 25.


Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging.

Greening C, Carere CR, Rushton-Green R, Harold LK, Hards K, Taylor MC, Morales SE, Stott MB, Cook GM.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10497-502. doi: 10.1073/pnas.1508385112. Epub 2015 Aug 3.


Atmospheric hydrogen scavenging: from enzymes to ecosystems.

Greening C, Constant P, Hards K, Morales SE, Oakeshott JG, Russell RJ, Taylor MC, Berney M, Conrad R, Cook GM.

Appl Environ Microbiol. 2015 Feb;81(4):1190-9. Review.


Energetics of pathogenic bacteria and opportunities for drug development.

Cook GM, Greening C, Hards K, Berney M.

Adv Microb Physiol. 2014;65:1-62. doi: 10.1016/bs.ampbs.2014.08.001. Epub 2014 Nov 4. Review.


The growth and survival of Mycobacterium smegmatis is enhanced by co-metabolism of atmospheric H2.

Greening C, Villas-Bôas SG, Robson JR, Berney M, Cook GM.

PLoS One. 2014 Jul 24;9(7):e103034. doi: 10.1371/journal.pone.0103034. eCollection 2014.


An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia.

Berney M, Greening C, Conrad R, Jacobs WR Jr, Cook GM.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11479-84. doi: 10.1073/pnas.1407034111. Epub 2014 Jul 21.


Integration of hydrogenase expression and hydrogen sensing in bacterial cell physiology.

Greening C, Cook GM.

Curr Opin Microbiol. 2014 Apr;18:30-8. doi: 10.1016/j.mib.2014.02.001. Epub 2014 Mar 5. Review.


A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases.

Greening C, Berney M, Hards K, Cook GM, Conrad R.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4257-61. doi: 10.1073/pnas.1320586111. Epub 2014 Mar 3.


Three different [NiFe] hydrogenases confer metabolic flexibility in the obligate aerobe Mycobacterium smegmatis.

Berney M, Greening C, Hards K, Collins D, Cook GM.

Environ Microbiol. 2014 Jan;16(1):318-30.


Spinal cord stimulation for predominant low back pain in failed back surgery syndrome: study protocol for an international multicenter randomized controlled trial (PROMISE study).

Rigoard P, Desai MJ, North RB, Taylor RS, Annemans L, Greening C, Tan Y, Van den Abeele C, Shipley J, Kumar K.

Trials. 2013 Nov 7;14:376. doi: 10.1186/1745-6215-14-376.


In pursuit of excellence: an integrated care pathway for C1 inhibitor deficiency.

Manson AL, Price A, Dempster J, Clinton-Tarestad P, Greening C, Enti R, Hill S, Grigoriadou S, Buckland MS, Longhurst HJ.

Clin Exp Immunol. 2013 Jul;173(1):1-7. doi: 10.1111/cei.12083.

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