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Items: 1 to 50 of 122

1.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7.

2.

Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.

Ahsanuddin S, Afshinnekoo E, Gandara J, Hakyemezoğlu M, Bezdan D, Minot S, Greenfield N, Mason CE.

J Biomol Tech. 2017 Apr;28(1):46-55. doi: 10.7171/jbt.17-2801-008. Epub 2017 Mar 21. Erratum in: J Biomol Tech. 2017 Jul;28(2):96.

3.

Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE.

J Biomol Tech. 2017 Apr;28(1):31-39. doi: 10.7171/jbt.17-2801-004. Epub 2017 Mar 10. Erratum in: J Biomol Tech. 2017 Jul;28(2):93.

4.

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing.

Sim JH, Truong C, Minot SS, Greenfield N, Budvytiene I, Lohith A, Anikst V, Pourmand N, Banaei N.

Diagn Microbiol Infect Dis. 2017 Jan;87(1):11-16. doi: 10.1016/j.diagmicrobio.2016.09.023. Epub 2016 Oct 5.

PMID:
27771207
5.

Circular dichroism (CD) analyses of protein-protein interactions.

Greenfield NJ.

Methods Mol Biol. 2015;1278:239-65. doi: 10.1007/978-1-4939-2425-7_15.

PMID:
25859954
6.

Maternity and medical leave during residency: Time to standardize?

Greenfield NP.

Int J Womens Dermatol. 2015 Feb 20;1(1):55. doi: 10.1016/j.ijwd.2014.12.009. eCollection 2015 Feb. No abstract available.

7.

Structural and protein interaction effects of hypertrophic and dilated cardiomyopathic mutations in alpha-tropomyosin.

Chang AN, Greenfield NJ, Singh A, Potter JD, Pinto JR.

Front Physiol. 2014 Dec 2;5:460. doi: 10.3389/fphys.2014.00460. eCollection 2014.

8.

Imaging late complications of cholecystectomy.

Greenfield NP, Azziz AS, Jung AJ, Yeh BM, Aslam R, Coakley FV.

Clin Imaging. 2012 Nov-Dec;36(6):763-7. doi: 10.1016/j.clinimag.2012.01.024. Epub 2012 Jun 8. Review.

PMID:
23154007
9.

Pharmacogenomic biomarkers in dermatologic drugs.

Greenfield NP, Maibach H.

J Dermatolog Treat. 2013 Dec;24(6):408-10. doi: 10.3109/09546634.2012.697989. Epub 2012 Jul 25.

PMID:
22646507
10.

Evaluating the adequacy of fluid resuscitation in patients with septic shock: controversies and future directions.

Greenfield N, Balk RA.

Hosp Pract (1995). 2012 Apr;40(2):147-57. doi: 10.3810/hp.2012.04.980. Review.

PMID:
22615089
11.

Characterization of an actively linearized ultrabroadband chirped laser with a fiber-laser optical frequency comb.

Barber ZW, Giorgetta FR, Roos PA, Coddington I, Dahl JR, Reibel RR, Greenfield N, Newbury NR.

Opt Lett. 2011 Apr 1;36(7):1152-4. doi: 10.1364/OL.36.001152.

PMID:
21479013
12.

Structure of the N terminus of a nonmuscle alpha-tropomyosin in complex with the C terminus: implications for actin binding.

Greenfield NJ, Kotlyanskaya L, Hitchcock-DeGregori SE.

Biochemistry. 2009 Feb 17;48(6):1272-83. doi: 10.1021/bi801861k.

13.

Molecular basis of tropomyosin binding to tropomodulin, an actin-capping protein.

Kostyukova AS, Hitchcock-Degregori SE, Greenfield NJ.

J Mol Biol. 2007 Sep 21;372(3):608-18. Epub 2007 Jun 2.

14.

Tropomyosin regulates elongation by formin at the fast-growing end of the actin filament.

Wawro B, Greenfield NJ, Wear MA, Cooper JA, Higgs HN, Hitchcock-DeGregori SE.

Biochemistry. 2007 Jul 10;46(27):8146-55. Epub 2007 Jun 15.

15.

Effects of estradiol and 4-hydroxytamoxifen on the conformation, thermal stability, and DNA recognition of estrogen receptor beta.

Vijayanathan V, Greenfield NJ, Thomas TJ, Ivanova MM, Tyulmenkov VV, Klinge CM, Gallo MA, Thomas T.

Biochem Cell Biol. 2007 Feb;85(1):1-10.

PMID:
17464340
16.
17.
20.

Tropomyosin: regulator of actin filaments.

Hitchcock-DeGregori SE, Greenfield NJ, Singh A.

Adv Exp Med Biol. 2007;592:87-97. Review. No abstract available.

PMID:
17278358
21.

Solution NMR structure of the junction between tropomyosin molecules: implications for actin binding and regulation.

Greenfield NJ, Huang YJ, Swapna GV, Bhattacharya A, Rapp B, Singh A, Montelione GT, Hitchcock-DeGregori SE.

J Mol Biol. 2006 Nov 17;364(1):80-96. Epub 2006 Aug 17.

PMID:
16999976
22.

Conformational dynamics of estrogen receptors alpha and beta as revealed by intrinsic tryptophan fluorescence and circular dichroism.

Nair SK, Thomas TJ, Greenfield NJ, Chen A, He H, Thomas T.

J Mol Endocrinol. 2005 Oct;35(2):211-23.

PMID:
16216903
23.

Structural requirements of tropomodulin for tropomyosin binding and actin filament capping.

Kostyukova AS, Rapp BA, Choy A, Greenfield NJ, Hitchcock-DeGregori SE.

Biochemistry. 2005 Mar 29;44(12):4905-10.

PMID:
15779917
24.

Structure and tropomyosin binding properties of the N-terminal capping domain of tropomodulin 1.

Greenfield NJ, Kostyukova AS, Hitchcock-DeGregori SE.

Biophys J. 2005 Jan;88(1):372-83. Epub 2004 Oct 8.

25.

Circular dichroism analysis for protein-protein interactions.

Greenfield NJ.

Methods Mol Biol. 2004;261:55-78. Review.

PMID:
15064449
26.

Analysis of circular dichroism data.

Greenfield NJ.

Methods Enzymol. 2004;383:282-317. Review. No abstract available.

PMID:
15063655
27.

Tropomodulin contains two actin filament pointed end-capping domains.

Fowler VM, Greenfield NJ, Moyer J.

J Biol Chem. 2003 Oct 10;278(41):40000-9. Epub 2003 Jul 14.

28.

Tropomyosin ends determine the stability and functionality of overlap and troponin T complexes.

Palm T, Greenfield NJ, Hitchcock-DeGregori SE.

Biophys J. 2003 May;84(5):3181-9.

29.

The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices.

Greenfield NJ, Swapna GV, Huang Y, Palm T, Graboski S, Montelione GT, Hitchcock-DeGregori SE.

Biochemistry. 2003 Jan 28;42(3):614-9.

PMID:
12534273
30.

Functions of tropomyosin's periodic repeats.

Hitchcock-DeGregori SE, Song Y, Greenfield NJ.

Biochemistry. 2002 Dec 17;41(50):15036-44.

PMID:
12475253
31.

VSV transmembrane domain (TMD) peptide promotes PEG-mediated fusion of liposomes in a conformationally sensitive fashion.

Dennison SM, Greenfield N, Lenard J, Lentz BR.

Biochemistry. 2002 Dec 17;41(50):14925-34.

PMID:
12475241
32.
33.
34.

Disease-causing mutations in cardiac troponin T: identification of a critical tropomyosin-binding region.

Palm T, Graboski S, Hitchcock-DeGregori SE, Greenfield NJ.

Biophys J. 2001 Nov;81(5):2827-37. Erratum in: Biophys J 2002 May;82(5):2826.

35.

Solution NMR structure and folding dynamics of the N terminus of a rat non-muscle alpha-tropomyosin in an engineered chimeric protein.

Greenfield NJ, Huang YJ, Palm T, Swapna GV, Monleon D, Montelione GT, Hitchcock-DeGregori SE.

J Mol Biol. 2001 Sep 28;312(4):833-47.

PMID:
11575936
36.

Deciphering the design of the tropomyosin molecule.

Brown JH, Kim KH, Jun G, Greenfield NJ, Dominguez R, Volkmann N, Hitchcock-DeGregori SE, Cohen C.

Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8496-501. Epub 2001 Jul 3.

37.
38.

Alteration of tropomyosin function and folding by a nemaline myopathy-causing mutation.

Moraczewska J, Greenfield NJ, Liu Y, Hitchcock-DeGregori SE.

Biophys J. 2000 Dec;79(6):3217-25.

39.

A calorimetric study of the folding-unfolding of an alpha-helix with covalently closed N and C-terminal loops.

Taylor JW, Greenfield NJ, Wu B, Privalov PL.

J Mol Biol. 1999 Aug 27;291(4):965-76.

PMID:
10452900
40.

Differential effects of cyclopolyamines on the stability and conformation of triplex DNA.

Antony T, Musso M, Hosseini MW, Brand G, Greenfield NJ, Thomas T, Van Dyke MW, Thomas TJ.

Antisense Nucleic Acid Drug Dev. 1999 Feb;9(1):13-23.

PMID:
10192285
41.

Conformational transitions of islet amyloid polypeptide (IAPP) in amyloid formation in vitro.

Kayed R, Bernhagen J, Greenfield N, Sweimeh K, Brunner H, Voelter W, Kapurniotu A.

J Mol Biol. 1999 Apr 9;287(4):781-96.

PMID:
10191146
42.

Effects of two familial hypertrophic cardiomyopathy-causing mutations on alpha-tropomyosin structure and function

Golitsina N, An Y, Greenfield NJ, Thierfelder L, Iizuka K, Seidman JG, Seidman CE, Lehrer SS, Hitchcock-DeGregori SE.

Biochemistry. 1999 Mar 23;38(12):3850. No abstract available.

PMID:
10090775
44.

Mutations in the N- and D-helices of the N-domain of troponin C affect the C-domain and regulatory function.

Smith L, Greenfield NJ, Hitchcock-DeGregori SE.

Biophys J. 1999 Jan;76(1 Pt 1):400-8.

45.

Haploinsufficiency of MSX1: a mechanism for selective tooth agenesis.

Hu G, Vastardis H, Bendall AJ, Wang Z, Logan M, Zhang H, Nelson C, Stein S, Greenfield N, Seidman CE, Seidman JG, Abate-Shen C.

Mol Cell Biol. 1998 Oct;18(10):6044-51.

46.

The structure of the N-terminus of striated muscle alpha-tropomyosin in a chimeric peptide: nuclear magnetic resonance structure and circular dichroism studies.

Greenfield NJ, Montelione GT, Farid RS, Hitchcock-DeGregori SE.

Biochemistry. 1998 May 26;37(21):7834-43.

PMID:
9601044
47.

Contribution of advanced glycosylation to the amyloidogenicity of islet amyloid polypeptide.

Kapurniotu A, Bernhagen J, Greenfield N, Al-Abed Y, Teichberg S, Frank RW, Voelter W, Bucala R.

Eur J Biochem. 1998 Jan 15;251(1-2):208-16.

48.

Effects of temperature and concentration on bovine lens alpha-crystallin secondary structure: a circular dichroism spectroscopic study.

Farnsworth PN, Groth-Vasselli B, Greenfield NJ, Singh K.

Int J Biol Macromol. 1997 Jul;20(4):283-91.

PMID:
9253648
49.

Effects of natural and synthetic polyamines on the conformation of an oligodeoxyribonucleotide with the estrogen response element.

Thomas T, Kulkarni GD, Gallo MA, Greenfield N, Lewis JS, Shirahata A, Thomas TJ.

Nucleic Acids Res. 1997 Jun 15;25(12):2396-402.

50.

Effects of two familial hypertrophic cardiomyopathy-causing mutations on alpha-tropomyosin structure and function.

Golitsina N, An Y, Greenfield NJ, Thierfelder L, Iizuka K, Seidman JG, Seidman CE, Lehrer SS, Hitchcock-DeGregori SE.

Biochemistry. 1997 Apr 15;36(15):4637-42. Erratum in: Biochemistry 1999 Mar 23;38(12):3850.

PMID:
9109674

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