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Functional connectivity predicts changes in attention observed across minutes, days, and months.

Rosenberg MD, Scheinost D, Greene AS, Avery EW, Kwon YH, Finn ES, Ramani R, Qiu M, Constable RT, Chun MM.

Proc Natl Acad Sci U S A. 2020 Feb 4. pii: 201912226. doi: 10.1073/pnas.1912226117. [Epub ahead of print]


Comparative and Functional Genomic Resource for Mechanistic Studies of Human Blood Pressure-Associated Single Nucleotide Polymorphisms.

Mishra MK, Liang EY, Geurts AM, Auer PWL, Liu P, Rao S, Greene AS, Liang M, Liu Y.

Hypertension. 2020 Jan 6:HYPERTENSIONAHA11914109. doi: 10.1161/HYPERTENSIONAHA.119.14109. [Epub ahead of print]


There is no single functional atlas even for a single individual: Functional parcel definitions change with task.

Salehi M, Greene AS, Karbasi A, Shen X, Scheinost D, Constable RT.

Neuroimage. 2020 Mar;208:116366. doi: 10.1016/j.neuroimage.2019.116366. Epub 2019 Nov 15.


Distributed Patterns of Functional Connectivity Predict Working Memory Performance in Novel Healthy and Memory-impaired Individuals.

Avery EW, Yoo K, Rosenberg MD, Greene AS, Gao S, Na DL, Scheinost D, Constable TR, Chun MM.

J Cogn Neurosci. 2020 Feb;32(2):241-255. doi: 10.1162/jocn_a_01487. Epub 2019 Oct 29.


AT1 receptor antagonism promotes bone loss attenuation in experimental periodontitis, block inflammatory mediators, upregulate antioxidant enzymes and bone formation markers.

Dionísio TJ, Souza GP, Colombini-Ishikiriama BL, Garbieri TF, Parisi VA, Oliveira GM, Cano IP, Rodini CO, Oliveira SHP, Greene AS, Santos CF.

J Periodontol. 2019 Aug 31. doi: 10.1002/JPER.19-0064. [Epub ahead of print]


Combining multiple connectomes improves predictive modeling of phenotypic measures.

Gao S, Greene AS, Constable RT, Scheinost D.

Neuroimage. 2019 Nov 1;201:116038. doi: 10.1016/j.neuroimage.2019.116038. Epub 2019 Jul 20.


Regions and Connections: Complementary Approaches to Characterize Brain Organization and Function.

Horien C, Greene AS, Constable RT, Scheinost D.

Neuroscientist. 2019 Jul 14:1073858419860115. doi: 10.1177/1073858419860115. [Epub ahead of print]


New Thermodynamics Boxes Simulation.

Greene AS.

CBE Life Sci Educ. 2019 Jun;18(2):le1. doi: 10.1187/cbe.18-11-0220. No abstract available.


Ten simple rules for predictive modeling of individual differences in neuroimaging.

Scheinost D, Noble S, Horien C, Greene AS, Lake EM, Salehi M, Gao S, Shen X, O'Connor D, Barron DS, Yip SW, Rosenberg MD, Constable RT.

Neuroimage. 2019 Jun;193:35-45. doi: 10.1016/j.neuroimage.2019.02.057. Epub 2019 Mar 1. Review.


Task-induced brain state manipulation improves prediction of individual traits.

Greene AS, Gao S, Scheinost D, Constable RT.

Nat Commun. 2018 Jul 18;9(1):2807. doi: 10.1038/s41467-018-04920-3.


Isomer-specific effect of microRNA miR-29b on nuclear morphology.

Kriegel AJ, Terhune SS, Greene AS, Noon KR, Pereckas MS, Liang M.

J Biol Chem. 2018 Sep 7;293(36):14080-14088. doi: 10.1074/jbc.RA117.001705. Epub 2018 Jul 13.


Genome-wide map of proximity linkage to renin proximal promoter in rat.

Stodola TJ, Liu P, Liu Y, Vallejos AK, Geurts AM, Greene AS, Liang M.

Physiol Genomics. 2018 May 1;50(5):323-331. doi: 10.1152/physiolgenomics.00132.2017. Epub 2018 Mar 9.


Corrigendum to "TRPC3 channels critically regulate hippocampal excitability and contextual fear memory" Behav. Brain Res. 281(March) 2015, 69-77.

Neuner SM, Wilmott LA, Hope KA, Hoffmann B, Chong JA, Abramowitz J, Birnbaumer L, O'Connell K, Tryba AK, Greene AS, Chan CS, Kaczorowski CC.

Behav Brain Res. 2017 Aug 14;332:379. doi: 10.1016/j.bbr.2017.05.038. Epub 2017 May 30. No abstract available.


Host genetic modifiers of nonproductive angiogenesis inhibit breast cancer.

Flister MJ, Tsaih SW, Stoddard A, Plasterer C, Jagtap J, Parchur AK, Sharma G, Prisco AR, Lemke A, Murphy D, Al-Gizawiy M, Straza M, Ran S, Geurts AM, Dwinell MR, Greene AS, Bergom C, LaViolette PS, Joshi A.

Breast Cancer Res Treat. 2017 Aug;165(1):53-64. doi: 10.1007/s10549-017-4311-8. Epub 2017 May 31.


Mitochondria-regulated formation of endothelium-derived extracellular vesicles shifts the mediator of flow-induced vasodilation.

Freed JK, Durand MJ, Hoffmann BR, Densmore JC, Greene AS, Gutterman DD.

Am J Physiol Heart Circ Physiol. 2017 May 1;312(5):H1096-H1104. doi: 10.1152/ajpheart.00680.2016. Epub 2017 Feb 17.


Mechanisms of Mas1 Receptor-Mediated Signaling in the Vascular Endothelium.

Hoffmann BR, Stodola TJ, Wagner JR, Didier DN, Exner EC, Lombard JH, Greene AS.

Arterioscler Thromb Vasc Biol. 2017 Mar;37(3):433-445. doi: 10.1161/ATVBAHA.116.307787. Epub 2017 Jan 12.


Breaking the Cycle: Estrous Variation Does Not Require Increased Sample Size in the Study of Female Rats.

Dayton A, Exner EC, Bukowy JD, Stodola TJ, Kurth T, Skelton M, Greene AS, Cowley AW Jr.

Hypertension. 2016 Nov;68(5):1139-1144. Epub 2016 Sep 26.


Tumor Necrosis Factor α Regulates Endothelial Progenitor Cell Migration via CADM1 and NF-kB.

Prisco AR, Hoffmann BR, Kaczorowski CC, McDermott-Roe C, Stodola TJ, Exner EC, Greene AS.

Stem Cells. 2016 Jul;34(7):1922-33. doi: 10.1002/stem.2339. Epub 2016 Mar 4.


Trypanosome Lytic Factor-1 Initiates Oxidation-stimulated Osmotic Lysis of Trypanosoma brucei brucei.

Greene AS, Hajduk SL.

J Biol Chem. 2016 Feb 5;291(6):3063-75. doi: 10.1074/jbc.M115.680371. Epub 2015 Dec 8.


Functional Local Renin-Angiotensin System in Human and Rat Periodontal Tissue.

Santos CF, Morandini AC, Dionísio TJ, Faria FA, Lima MC, Figueiredo CM, Colombini-Ishikiriama BL, Sipert CR, Maciel RP, Akashi AP, Souza GP, Garlet GP, Rodini CO, Amaral SL, Becari C, Salgado MC, Oliveira EB, Matus I, Didier DN, Greene AS.

PLoS One. 2015 Aug 5;10(8):e0134601. doi: 10.1371/journal.pone.0134601. eCollection 2015.


Genome-wide epigenetic and proteomic analysis reveals altered Notch signaling in EPC dysfunction.

Karcher JR, Hoffmann BR, Liu P, Liu Y, Liang M, Greene AS.

Physiol Rep. 2015 Apr;3(4). pii: e12358. doi: 10.14814/phy2.12358.


TNF-α increases endothelial progenitor cell adhesion to the endothelium by increasing bond expression and affinity.

Prisco AR, Prisco MR, Carlson BE, Greene AS.

Am J Physiol Heart Circ Physiol. 2015 Jun 1;308(11):H1368-81. doi: 10.1152/ajpheart.00496.2014. Epub 2014 Dec 24.


TRPC3 channels critically regulate hippocampal excitability and contextual fear memory.

Neuner SM, Wilmott LA, Hope KA, Hoffmann B, Chong JA, Abramowitz J, Birnbaumer L, O'Connell KM, Tryba AK, Greene AS, Savio Chan C, Kaczorowski CC.

Behav Brain Res. 2015 Mar 15;281:69-77. doi: 10.1016/j.bbr.2014.12.018. Epub 2014 Dec 13. Erratum in: Behav Brain Res. 2017 Aug 14;332:379.


Physiological genomics - where are we now?

Greene AS.

Physiol Genomics. 2014 Dec 15;46(24):859. doi: 10.1152/physiolgenomics.00127.2014. Epub 2014 Dec 9. No abstract available.


Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Li L, Chen E, Yang C, Zhu J, Jayaraman P, De Pons J, Kaczorowski CC, Jacob HJ, Greene AS, Hodges MR, Cowley AW Jr, Liang M, Xu H, Liu P, Lu Y.

Bioinformatics. 2015 Jan 1;31(1):25-32. doi: 10.1093/bioinformatics/btu608. Epub 2014 Sep 12.


Automated quantification reveals hyperglycemia inhibits endothelial angiogenic function.

Prisco AR, Bukowy JD, Hoffmann BR, Karcher JR, Exner EC, Greene AS.

PLoS One. 2014 Apr 9;9(4):e94599. doi: 10.1371/journal.pone.0094599. eCollection 2014.


Bone marrow mononuclear cell angiogenic competency is suppressed by a high-salt diet.

Karcher JR, Greene AS.

Am J Physiol Cell Physiol. 2014 Jan 15;306(2):C123-31. doi: 10.1152/ajpcell.00164.2013. Epub 2013 Nov 20.


Vascular endothelial growth factor-A signaling in bone marrow-derived endothelial progenitor cells exposed to hypoxic stress.

Hoffmann BR, Wagner JR, Prisco AR, Janiak A, Greene AS.

Physiol Genomics. 2013 Nov 1;45(21):1021-34. doi: 10.1152/physiolgenomics.00070.2013. Epub 2013 Sep 10.


Targeting the endothelial progenitor cell surface proteome to identify novel mechanisms that mediate angiogenic efficacy in a rodent model of vascular disease.

Kaczorowski CC, Stodola TJ, Hoffmann BR, Prisco AR, Liu PY, Didier DN, Karcher JR, Liang M, Jacob HJ, Greene AS.

Physiol Genomics. 2013 Nov 1;45(21):999-1011. doi: 10.1152/physiolgenomics.00097.2013. Epub 2013 Sep 10.


Female-specific hypertension loci on rat chromosome 13.

Hoffman MJ, Flister MJ, Nunez L, Xiao B, Greene AS, Jacob HJ, Moreno C.

Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.


Hypoxic preconditioning with cobalt of bone marrow mesenchymal stem cells improves cell migration and enhances therapy for treatment of ischemic acute kidney injury.

Yu X, Lu C, Liu H, Rao S, Cai J, Liu S, Kriegel AJ, Greene AS, Liang M, Ding X.

PLoS One. 2013 May 9;8(5):e62703. doi: 10.1371/journal.pone.0062703. Print 2013.


Chemical proteomics-based analysis of off-target binding profiles for rosiglitazone and pioglitazone: clues for assessing potential for cardiotoxicity.

Hoffmann BR, El-Mansy MF, Sem DS, Greene AS.

J Med Chem. 2012 Oct 11;55(19):8260-71. doi: 10.1021/jm301204r. Epub 2012 Sep 28.


Bone marrow mononuclear cells induce beneficial remodeling and reduce diastolic dysfunction in the left ventricle of hypertensive SS/MCWi rats.

Parker SJ, Didier DN, Karcher JR, Stodola TJ, Endres B, Greene AS.

Physiol Genomics. 2012 Oct 2;44(19):925-33. doi: 10.1152/physiolgenomics.00170.2011. Epub 2012 Jul 31.


Mitochondrial proteomic analysis reveals deficiencies in oxygen utilization in medullary thick ascending limb of Henle in the Dahl salt-sensitive rat.

Zheleznova NN, Yang C, Ryan RP, Halligan BD, Liang M, Greene AS, Cowley AW Jr.

Physiol Genomics. 2012 Sep 1;44(17):829-42. doi: 10.1152/physiolgenomics.00060.2012. Epub 2012 Jul 17.


Mechanisms of cardioprotection resulting from Brown Norway chromosome 16 substitution in the salt-sensitive Dahl rat.

Kriegel AJ, Didier DN, Li P, Lazar J, Greene AS.

Physiol Genomics. 2012 Aug 17;44(16):819-27. doi: 10.1152/physiolgenomics.00175.2011. Epub 2012 Jul 3.


Pharmacogenomic strain differences in cardiovascular sensitivity to propofol.

Stekiel TA, Contney SJ, Roman RJ, Weber CA, Stadnicka A, Bosnjak ZJ, Greene AS, Moreno C.

Anesthesiology. 2011 Dec;115(6):1192-200. doi: 10.1097/ALN.0b013e318238f445.


Characterization of the genomic structure and function of regions influencing renin and angiogenesis in the SS rat.

Stodola TJ, de Resende MM, Sarkis AB, Didier DN, Jacob HJ, Huebner N, Hummel O, Saar K, Moreno C, Greene AS.

Physiol Genomics. 2011 Jul 14;43(13):808-17. doi: 10.1152/physiolgenomics.00171.2010. Epub 2011 Apr 26.


Visualize: a free and open source multifunction tool for proteomics data analysis.

Halligan BD, Greene AS.

Proteomics. 2011 Mar;11(6):1058-63. doi: 10.1002/pmic.201000556. Epub 2011 Feb 7.


Creation and characterization of a renin knockout rat.

Moreno C, Hoffman M, Stodola TJ, Didier DN, Lazar J, Geurts AM, North PE, Jacob HJ, Greene AS.

Hypertension. 2011 Mar;57(3):614-9. doi: 10.1161/HYPERTENSIONAHA.110.163840. Epub 2011 Jan 17.


The importance of being Earnest: I can't glean which gene you mean.

Greene AS.

Physiol Genomics. 2011 Feb 24;43(4):187. doi: 10.1152/physiolgenomics.00252.2010. Epub 2010 Dec 21. No abstract available.


Impaired relaxation of cerebral arteries in the absence of elevated salt intake in normotensive congenic rats carrying the Dahl salt-sensitive renin gene.

Durand MJ, Moreno C, Greene AS, Lombard JH.

Am J Physiol Heart Circ Physiol. 2010 Dec;299(6):H1865-74. doi: 10.1152/ajpheart.00700.2010. Epub 2010 Sep 17.


MicroRNA-target pairs in human renal epithelial cells treated with transforming growth factor beta 1: a novel role of miR-382.

Kriegel AJ, Fang Y, Liu Y, Tian Z, Mladinov D, Matus IR, Ding X, Greene AS, Liang M.

Nucleic Acids Res. 2010 Dec;38(22):8338-47. doi: 10.1093/nar/gkq718. Epub 2010 Aug 16.


Candidate urinary biomarker discovery in ureteropelvic junction obstruction: a proteomic approach.

Mesrobian HG, Mitchell ME, See WA, Halligan BD, Carlson BE, Greene AS, Wakim BT.

J Urol. 2010 Aug;184(2):709-14. doi: 10.1016/j.juro.2010.03.061.


Proteomic analysis of shear stress-mediated protection from TNF-alpha in endothelial cells.

Freed JK, Greene AS.

Microcirculation. 2010 May;17(4):259-70. doi: 10.1111/j.1549-8719.2010.00031.x.


Role of the renin angiotensin system on bone marrow-derived stem cell function and its impact on skeletal muscle angiogenesis.

de Resende MM, Stodola TJ, Greene AS.

Physiol Genomics. 2010 Aug;42(3):437-44. doi: 10.1152/physiolgenomics.00037.2010. Epub 2010 May 25.


Quantitative analysis of SILAC data sets using spectral counting.

Parker SJ, Halligan BD, Greene AS.

Proteomics. 2010 Apr;10(7):1408-15. doi: 10.1002/pmic.200900684.


Dynamic convergence and divergence of renal genomic and biological pathways in protection from Dahl salt-sensitive hypertension.

Lu L, Li P, Yang C, Kurth T, Misale M, Skelton M, Moreno C, Roman RJ, Greene AS, Jacob HJ, Lazar J, Liang M, Cowley AW Jr.

Physiol Genomics. 2010 Mar 3;41(1):63-70. doi: 10.1152/physiolgenomics.00170.2009. Epub 2009 Dec 15.


Restoration of cerebral vascular relaxation in renin congenic rats by introgression of the Dahl R renin gene.

Drenjancevic-Peric I, Weinberg BD, Greene AS, Lombard JH.

Am J Hypertens. 2010 Mar;23(3):243-8. doi: 10.1038/ajh.2009.236. Epub 2009 Dec 3.


Novel role of fumarate metabolism in dahl-salt sensitive hypertension.

Tian Z, Liu Y, Usa K, Mladinov D, Fang Y, Ding X, Greene AS, Cowley AW Jr, Liang M.

Hypertension. 2009 Aug;54(2):255-60. doi: 10.1161/HYPERTENSIONAHA.109.129528. Epub 2009 Jun 22.


Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.

Halligan BD, Geiger JF, Vallejos AK, Greene AS, Twigger SN.

J Proteome Res. 2009 Jun;8(6):3148-53. doi: 10.1021/pr800970z.

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