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Introduction to the special issue of Child Abuse and Neglect: Global child trafficking and health.

Greenbaum J, Albright K, Tsai C.

Child Abuse Negl. 2019 Dec 16:104321. doi: 10.1016/j.chiabu.2019.104321. [Epub ahead of print] No abstract available.


Systematic review of facilitators of, barriers to, and recommendations for healthcare services for child survivors of human trafficking globally.

Albright K, Greenbaum J, Edwards SA, Tsai C.

Child Abuse Negl. 2019 Nov 28:104289. doi: 10.1016/j.chiabu.2019.104289. [Epub ahead of print]


Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data.

Pomaznoy M, Sethi A, Greenbaum J, Peters B.

Sci Rep. 2019 Nov 8;9(1):16342. doi: 10.1038/s41598-019-52584-w.


Circulating T cell-monocyte complexes are markers of immune perturbations.

Burel JG, Pomaznoy M, Lindestam Arlehamn CS, Weiskopf D, da Silva Antunes R, Jung Y, Babor M, Schulten V, Seumois G, Greenbaum JA, Premawansa S, Premawansa G, Wijewickrama A, Vidanagama D, Gunasena B, Tippalagama R, deSilva AD, Gilman RH, Saito M, Taplitz R, Ley K, Vijayanand P, Sette A, Peters B.

Elife. 2019 Jun 25;8. pii: e46045. doi: 10.7554/eLife.46045.


A statistical approach to fine-mapping for the identification of potential causal variants related to human intelligence.

Gong Y, Greenbaum J, Deng HW.

J Hum Genet. 2019 Aug;64(8):781-787. doi: 10.1038/s10038-019-0623-3. Epub 2019 Jun 5.


IEDB-AR: immune epitope database-analysis resource in 2019.

Dhanda SK, Mahajan S, Paul S, Yan Z, Kim H, Jespersen MC, Jurtz V, Andreatta M, Greenbaum JA, Marcatili P, Sette A, Nielsen M, Peters B.

Nucleic Acids Res. 2019 Jul 2;47(W1):W502-W506. doi: 10.1093/nar/gkz452.


The healthcare response to human trafficking: A need for globally harmonized ICD codes.

Greenbaum J, Stoklosa H.

PLoS Med. 2019 May 2;16(5):e1002799. doi: 10.1371/journal.pmed.1002799. eCollection 2019 May.


Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression.

Schmiedel BJ, Singh D, Madrigal A, Valdovino-Gonzalez AG, White BM, Zapardiel-Gonzalo J, Ha B, Altay G, Greenbaum JA, McVicker G, Seumois G, Rao A, Kronenberg M, Peters B, Vijayanand P.

Cell. 2018 Nov 29;175(6):1701-1715.e16. doi: 10.1016/j.cell.2018.10.022. Epub 2018 Nov 15.


Predicting T cell recognition of MHC class I restricted neoepitopes.

Koşaloğlu-Yalçın Z, Lanka M, Frentzen A, Logandha Ramamoorthy Premlal A, Sidney J, Vaughan K, Greenbaum J, Robbins P, Gartner J, Sette A, Peters B.

Oncoimmunology. 2018 Aug 27;7(11):e1492508. doi: 10.1080/2162402X.2018.1492508. eCollection 2018.


Age at menarche and osteoporosis: A Mendelian randomization study.

Zhang Q, Greenbaum J, Zhang WD, Sun CQ, Deng HW.

Bone. 2018 Dec;117:91-97. doi: 10.1016/j.bone.2018.09.015. Epub 2018 Sep 18.


Identification of novel variants associated with osteoporosis, type 2 diabetes and potentially pleiotropic loci using pleiotropic cFDR method.

Hu Y, Tan LJ, Chen XD, Greenbaum J, Deng HW.

Bone. 2018 Dec;117:6-14. doi: 10.1016/j.bone.2018.08.020. Epub 2018 Aug 30.


Intrinsic processes drive variability in basal melting of the Totten Glacier Ice Shelf.

Gwyther DE, O'Kane TJ, Galton-Fenzi BK, Monselesan DP, Greenbaum JS.

Nat Commun. 2018 Aug 7;9(1):3141. doi: 10.1038/s41467-018-05618-2.


Child Sex Trafficking and Commercial Sexual Exploitation.

Greenbaum J.

Adv Pediatr. 2018 Aug;65(1):55-70. doi: 10.1016/j.yapd.2018.04.003. Epub 2018 Jun 13. Review. No abstract available.


Basal channels drive active surface hydrology and transverse ice shelf fracture.

Dow CF, Lee WS, Greenbaum JS, Greene CA, Blankenship DD, Poinar K, Forrest AL, Young DA, Zappa CJ.

Sci Adv. 2018 Jun 13;4(6):eaao7212. doi: 10.1126/sciadv.aao7212. eCollection 2018 Jun.


YAP and MRTF-A, transcriptional co-activators of RhoA-mediated gene expression, are critical for glioblastoma tumorigenicity.

Yu OM, Benitez JA, Plouffe SW, Ryback D, Klein A, Smith J, Greenbaum J, Delatte B, Rao A, Guan KL, Furnari FB, Chaim OM, Miyamoto S, Brown JH.

Oncogene. 2018 Oct;37(41):5492-5507. doi: 10.1038/s41388-018-0301-5. Epub 2018 Jun 11.


Integration of summary data from GWAS and eQTL studies identified novel causal BMD genes with functional predictions.

Meng XH, Chen XD, Greenbaum J, Zeng Q, You SL, Xiao HM, Tan LJ, Deng HW.

Bone. 2018 Aug;113:41-48. doi: 10.1016/j.bone.2018.05.012. Epub 2018 May 12.


Response to Comment on "Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment".

Chandra S, Wingender G, Greenbaum JA, Kronenberg M.

J Immunol. 2018 May 15;200(10):3317-3318. doi: 10.4049/jimmunol.1800397. No abstract available.


Discovery of a hypersaline subglacial lake complex beneath Devon Ice Cap, Canadian Arctic.

Rutishauser A, Blankenship DD, Sharp M, Skidmore ML, Greenbaum JS, Grima C, Schroeder DM, Dowdeswell JA, Young DA.

Sci Adv. 2018 Apr 11;4(4):eaar4353. doi: 10.1126/sciadv.aar4353. eCollection 2018 Apr.


Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis.

Burel JG, Lindestam Arlehamn CS, Khan N, Seumois G, Greenbaum JA, Taplitz R, Gilman RH, Saito M, Vijayanand P, Sette A, Peters B.

J Immunol. 2018 May 1;200(9):3283-3290. doi: 10.4049/jimmunol.1800118. Epub 2018 Mar 30.


Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment.

Chandra S, Wingender G, Greenbaum JA, Khurana A, Gholami AM, Ganesan AP, Rosenbach M, Jaffee K, Gern JE, Wood R, O'Connor G, Sandel M, Kattan M, Bacharier L, Togias A, Horner AA, Kronenberg M.

J Immunol. 2018 Mar 15;200(6):1995-2003. doi: 10.4049/jimmunol.1701525. Epub 2018 Feb 5.


Identifying potentially common genes between dyslipidemia and osteoporosis using novel analytical approaches.

Lin X, Peng C, Greenbaum J, Li ZF, Wu KH, Ao ZX, Zhang T, Shen J, Deng HW.

Mol Genet Genomics. 2018 Jun;293(3):711-723. doi: 10.1007/s00438-017-1414-1. Epub 2018 Jan 11.


Improved methods for predicting peptide binding affinity to MHC class II molecules.

Jensen KK, Andreatta M, Marcatili P, Buus S, Greenbaum JA, Yan Z, Sette A, Peters B, Nielsen M.

Immunology. 2018 Jul;154(3):394-406. doi: 10.1111/imm.12889. Epub 2018 Feb 6.


An automated benchmarking platform for MHC class II binding prediction methods.

Andreatta M, Trolle T, Yan Z, Greenbaum JA, Peters B, Nielsen M.

Bioinformatics. 2018 May 1;34(9):1522-1528. doi: 10.1093/bioinformatics/btx820.


Novel Common Variants Associated with Obesity and Type 2 Diabetes Detected Using a cFDR Method.

Zhang Q, Wu KH, He JY, Zeng Y, Greenbaum J, Xia X, Liu HM, Lv WQ, Lin X, Zhang WD, Xi YL, Shi XZ, Sun CQ, Deng HW.

Sci Rep. 2017 Nov 27;7(1):16397. doi: 10.1038/s41598-017-16722-6.


Global Human Trafficking and Child Victimization.


Pediatrics. 2017 Dec;140(6). pii: e20173138. doi: 10.1542/peds.2017-3138. Review.


Twelve-Month Outcomes of a Group-Randomized Community Health Advocate-Led Smoking Cessation Intervention in Public Housing.

Brooks DR, Burtner JL, Borrelli B, Heeren TC, Evans T, Davine JA, Greenbaum J, Scarpaci M, Kane J, Rees VW, Geller AC.

Nicotine Tob Res. 2018 Nov 15;20(12):1434-1441. doi: 10.1093/ntr/ntx193.


Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA.

Tian Y, Babor M, Lane J, Schulten V, Patil VS, Seumois G, Rosales SL, Fu Z, Picarda G, Burel J, Zapardiel-Gonzalo J, Tennekoon RN, De Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Greenbaum JA, Vijayanand P, Weiskopf D, Sette A, Peters B.

Nat Commun. 2017 Nov 13;8(1):1473. doi: 10.1038/s41467-017-01728-5.


An IRF-3-, IRF-5-, and IRF-7-Independent Pathway of Dengue Viral Resistance Utilizes IRF-1 to Stimulate Type I and II Interferon Responses.

Carlin AF, Plummer EM, Vizcarra EA, Sheets N, Joo Y, Tang W, Day J, Greenbaum J, Glass CK, Diamond MS, Shresta S.

Cell Rep. 2017 Nov 7;21(6):1600-1612. doi: 10.1016/j.celrep.2017.10.054.


Association Between Gut Microbiota and Bone Health: Potential Mechanisms and Prospective.

Chen YC, Greenbaum J, Shen H, Deng HW.

J Clin Endocrinol Metab. 2017 Oct 1;102(10):3635-3646. doi: 10.1210/jc.2017-00513. Review.


Linking Alzheimer's disease and type 2 diabetes: Novel shared susceptibility genes detected by cFDR approach.

Wang XF, Lin X, Li DY, Zhou R, Greenbaum J, Chen YC, Zeng CP, Peng LP, Wu KH, Ao ZX, Lu JM, Guo YF, Shen J, Deng HW.

J Neurol Sci. 2017 Sep 15;380:262-272. doi: 10.1016/j.jns.2017.07.044. Epub 2017 Aug 1.


Identification of novel genetic loci for osteoporosis and/or rheumatoid arthritis using cFDR approach.

Zhou R, Lin X, Li DY, Wang XF, Greenbaum J, Chen YC, Zeng CP, Lu JM, Ao ZX, Peng LP, Bai XC, Shen J, Deng HW.

PLoS One. 2017 Aug 30;12(8):e0183842. doi: 10.1371/journal.pone.0183842. eCollection 2017.


Commercial Sexual Exploitation and Sex Trafficking of Children and Adolescents: A Narrative Review.

Barnert E, Iqbal Z, Bruce J, Anoshiravani A, Kolhatkar G, Greenbaum J.

Acad Pediatr. 2017 Nov - Dec;17(8):825-829. doi: 10.1016/j.acap.2017.07.009. Epub 2017 Aug 7. Review.


Enhanced Identification of Potential Pleiotropic Genetic Variants for Bone Mineral Density and Breast Cancer.

Peng C, Lou HL, Liu F, Shen J, Lin X, Zeng CP, Long JR, Su KJ, Zhang L, Greenbaum J, Deng WF, Li YM, Deng HW.

Calcif Tissue Int. 2017 Nov;101(5):489-500. doi: 10.1007/s00223-017-0308-x. Epub 2017 Jul 31.


Crosstalk and the evolvability of intracellular communication.

Rowland MA, Greenbaum JM, Deeds EJ.

Nat Commun. 2017 Jul 10;8:16009. doi: 10.1038/ncomms16009.


Genetic sharing with coronary artery disease identifies potential novel loci for bone mineral density.

Peng C, Shen J, Lin X, Su KJ, Greenbaum J, Zhu W, Lou HL, Liu F, Zeng CP, Deng WF, Deng HW.

Bone. 2017 Oct;103:70-77. doi: 10.1016/j.bone.2017.06.016. Epub 2017 Jun 23.


A Statistical Approach to Fine Mapping for the Identification of Potential Causal Variants Related to Bone Mineral Density.

Greenbaum J, Deng HW.

J Bone Miner Res. 2017 Aug;32(8):1651-1658. doi: 10.1002/jbmr.3154. Epub 2017 May 22.


Increased detection of genetic loci associated with risk predictors of osteoporotic fracture using a pleiotropic cFDR method.

Greenbaum J, Wu K, Zhang L, Shen H, Zhang J, Deng HW.

Bone. 2017 Jun;99:62-68. doi: 10.1016/j.bone.2017.03.052. Epub 2017 Mar 31.


Surgical Case Order Has an Effect on the Risk of Subsequent Periprosthetic Joint Infection.

Chen AF, Kheir MM, Greenbaum JM, Restrepo C, Maltenfort MG, Parvizi J.

J Arthroplasty. 2017 Jul;32(7):2234-2238. doi: 10.1016/j.arth.2017.02.029. Epub 2017 Feb 20.


Blood Management Strategies to Reduce Transfusions After Elective Lower-Extremity Joint Arthroplasty Surgeries: One Tertiary Care Hospital's Early Experience With an Alternative Payment Model-a Total Joint "Bundle".

Kansagra A, Andrzejewski C, Krushell R, Lehman A, Greenbaum J, Visintainer P, McGirr J, Mahoney K, Cloutier D, Ehresman A, Stefan MS.

Am J Med Qual. 2017 Nov/Dec;32(6):668-674. doi: 10.1177/1062860616687035. Epub 2017 Jan 20.


The Photodynamic Therapy Experience of a High Volume Laser and Dermatologic Surgery Center.

Orbuch DE, Penn L, Bloom BS, Brauer JA, Shin DB, Greenbaum J, Bernstein LJ, Weiss ET, Anolik RT, Geronemus RG.

J Drugs Dermatol. 2016 Nov 1;15(11):1420-1426.


Ocean heat drives rapid basal melt of the Totten Ice Shelf.

Rintoul SR, Silvano A, Pena-Molino B, van Wijk E, Rosenberg M, Greenbaum JS, Blankenship DD.

Sci Adv. 2016 Dec 16;2(12):e1601610. doi: 10.1126/sciadv.1601610. eCollection 2016 Dec.


Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts.

Oseroff C, Pham J, Frazier A, Hinz D, Sidney J, Paul S, Greenbaum JA, Vita R, Peters B, Schulten V, Sette A.

Ann Allergy Asthma Immunol. 2016 Dec;117(6):680-689.e1. doi: 10.1016/j.anai.2016.10.014. Erratum in: Ann Allergy Asthma Immunol. 2017 Mar;118(3):384.


Increased identification of novel variants in type 2 diabetes, birth weight and their pleiotropic loci.

Zeng CP, Chen YC, Lin X, Greenbaum J, Chen YP, Peng C, Wang XF, Zhou R, Deng WM, Shen J, Deng HW.

J Diabetes. 2017 Oct;9(10):898-907. doi: 10.1111/1753-0407.12510. Epub 2017 Jan 20.


Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity.

Oseroff C, Christensen LH, Westernberg L, Pham J, Lane J, Paul S, Greenbaum J, Stranzl T, Lund G, Hoof I, Holm J, Würtzen PA, Meno KH, Frazier A, Schulten V, Andersen PS, Peters B, Sette A.

Clin Exp Allergy. 2017 Apr;47(4):577-592. doi: 10.1111/cea.12829. Epub 2016 Nov 7.


Sequence conservation predicts T cell reactivity against ragweed allergens.

Pham J, Oseroff C, Hinz D, Sidney J, Paul S, Greenbaum J, Vita R, Phillips E, Mallal S, Peters B, Sette A.

Clin Exp Allergy. 2016 Sep;46(9):1194-205. doi: 10.1111/cea.12772. Epub 2016 Jul 26.


Repeated large-scale retreat and advance of Totten Glacier indicated by inland bed erosion.

Aitken AR, Roberts JL, van Ommen TD, Young DA, Golledge NR, Greenbaum JS, Blankenship DD, Siegert MJ.

Nature. 2016 May 19;533(7603):385-9. doi: 10.1038/nature17447.


T-cell epitope conservation across allergen species is a major determinant of immunogenicity.

Westernberg L, Schulten V, Greenbaum JA, Natali S, Tripple V, McKinney DM, Frazier A, Hofer H, Wallner M, Sallusto F, Sette A, Peters B.

J Allergy Clin Immunol. 2016 Aug;138(2):571-578.e7. doi: 10.1016/j.jaci.2015.11.034. Epub 2016 Feb 13.


T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome.

Bresciani A, Paul S, Schommer N, Dillon MB, Bancroft T, Greenbaum J, Sette A, Nielsen M, Peters B.

Immunology. 2016 May;148(1):34-9. doi: 10.1111/imm.12585. Epub 2016 Feb 8.


Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with the allergen-specific modulation of immune reactivity.

Hinz D, Seumois G, Gholami AM, Greenbaum JA, Lane J, White B, Broide DH, Schulten V, Sidney J, Bakhru P, Oseroff C, Wambre E, James EA, Kwok WW, Peters B, Vijayanand P, Sette A.

Clin Exp Allergy. 2016 May;46(5):705-19. doi: 10.1111/cea.12692.


Experience with Designing and Implementing a Bundled Payment Program for Total Hip Replacement.

Whitcomb WF, Lagu T, Krushell RJ, Lehman AP, Greenbaum J, McGirr J, Pekow PS, Calcasola S, Benjamin E, Mayforth J, Lindenauer PK.

Jt Comm J Qual Patient Saf. 2015 Sep;41(9):406-13.

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