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Items: 1 to 50 of 265

1.

Deconstructing the Polymerase Chain Reaction II: an improved workflow and effects on artifact formation and primer degeneracy.

Naqib A, Poggi S, Green SJ.

PeerJ. 2019 Jun 14;7:e7121. doi: 10.7717/peerj.7121. eCollection 2019.

PMID:
31231597
2.

The 'in vivo lifestyle' of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.

Ridlon JM, Devendran S, Alves JM, Doden H, Wolf PG, Pereira GV, Ly L, Volland A, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Hernandez AG, Fields CJ, Wright CL, Kakiyama G, Cann I, Kashyap P, McCracken V, Gaskins HR.

Gut Microbes. 2019 Jun 9:1-24. doi: 10.1080/19490976.2019.1618173. [Epub ahead of print]

PMID:
31177942
3.

Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome.

Sedghi L, Byron C, Jennings R, Chlipala GE, Green SJ, Silo-Suh L.

Dent J (Basel). 2019 Jun 1;7(2). pii: E58. doi: 10.3390/dj7020058.

4.

Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing.

Qi C, Hountras P, Pickens CO, Walter JM, Kruser JM, Singer BD, Seed P, Green SJ, Wunderink RG.

J Med Microbiol. 2019 May 28. doi: 10.1099/jmm.0.000968. [Epub ahead of print]

PMID:
31136295
5.

Crosslinker co-polymerisation for property control in inverse vulcanisation.

Hasell T, Smith JA, Green SJ, Petcher S, Parker DJ, Zhang B, Worthington MJH, Wu X, Kelly CA, Baker T, Gibson CT, Campbell JA, Lewis DA, Jenkins MJ, Willcock H, Chalker JM.

Chemistry. 2019 May 28. doi: 10.1002/chem.201901619. [Epub ahead of print]

PMID:
31136036
6.

Correction for Gaby et al., "Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline".

Gaby JC, Rishishwar L, Valderrama-Aguirre LC, Green SJ, Valderrama-Aguirre A, Jordan IK, Kostka JE.

Appl Environ Microbiol. 2019 May 16;85(11). pii: e00713-19. doi: 10.1128/AEM.00713-19. Print 2019 Jun 1. No abstract available.

7.

Genome Sequence of Marine-Derived Streptomyces sp. Strain F001, a Producer of Akashin A and Diazaquinomycins.

Braesel J, Clark CM, Kunstman KJ, Green SJ, Maienschein-Cline M, Murphy BT, Eustáquio AS.

Microbiol Resour Announc. 2019 May 9;8(19). pii: e00165-19. doi: 10.1128/MRA.00165-19.

8.

Letter by Green Regarding Article "Small Amounts of Inorganic Nitrate or Beetroot Provide Substantial Protection From Salt-Induced Increases in Blood Pressure".

Green SJ.

Hypertension. 2019 Jul;74(1):e4-e5. doi: 10.1161/HYPERTENSIONAHA.119.13189. Epub 2019 May 6. No abstract available.

PMID:
31055954
9.

The Combination of 2'-Fucosyllactose with Short-Chain Galacto-Oligosaccharides and Long-Chain Fructo-Oligosaccharides that Enhance Influenza Vaccine Responses Is Associated with Mucosal Immune Regulation in Mice.

Xiao L, Engen PA, Leusink-Muis T, van Ark I, Stahl B, Overbeek SA, Garssen J, Naqib A, Green SJ, Keshavarzian A, Folkerts G, Van't Land B.

J Nutr. 2019 May 1;149(5):856-869. doi: 10.1093/jn/nxz006.

10.

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Garrett-Bakelman FE, Darshi M, Green SJ, Gur RC, Lin L, Macias BR, McKenna MJ, Meydan C, Mishra T, Nasrini J, Piening BD, Rizzardi LF, Sharma K, Siamwala JH, Taylor L, Vitaterna MH, Afkarian M, Afshinnekoo E, Ahadi S, Ambati A, Arya M, Bezdan D, Callahan CM, Chen S, Choi AMK, Chlipala GE, Contrepois K, Covington M, Crucian BE, De Vivo I, Dinges DF, Ebert DJ, Feinberg JI, Gandara JA, George KA, Goutsias J, Grills GS, Hargens AR, Heer M, Hillary RP, Hoofnagle AN, Hook VYH, Jenkinson G, Jiang P, Keshavarzian A, Laurie SS, Lee-McMullen B, Lumpkins SB, MacKay M, Maienschein-Cline MG, Melnick AM, Moore TM, Nakahira K, Patel HH, Pietrzyk R, Rao V, Saito R, Salins DN, Schilling JM, Sears DD, Sheridan CK, Stenger MB, Tryggvadottir R, Urban AE, Vaisar T, Van Espen B, Zhang J, Ziegler MG, Zwart SR, Charles JB, Kundrot CE, Scott GBI, Bailey SM, Basner M, Feinberg AP, Lee SMC, Mason CE, Mignot E, Rana BK, Smith SM, Snyder MP, Turek FW.

Science. 2019 Apr 12;364(6436). pii: eaau8650. doi: 10.1126/science.aau8650.

PMID:
30975860
11.

Complete Genome Sequence of a USA100 Methicillin-Resistant Staphylococcus aureus Strain.

Chlipala GE, Lei ZA, Maienschein-Cline M, Kunstman K, Okamoto K, Green SJ, Popovich KJ.

Microbiol Resour Announc. 2019 Mar 14;8(11). pii: e00006-19. doi: 10.1128/MRA.00006-19.

12.

PCR effects of melting temperature adjustment of individual primers in degenerate primer pools.

Naqib A, Jeon T, Kunstman K, Wang W, Shen Y, Sweeney D, Hyde M, Green SJ.

PeerJ. 2019 Mar 4;7:e6570. doi: 10.7717/peerj.6570. eCollection 2019.

13.

Physical Inaccessibility of a Resistant Starch Shifts Mouse Gut Microbiota to Butyrogenic Firmicutes.

Kaur A, Chen T, Green SJ, Mutlu E, Martin BR, Rumpagaporn P, Patterson JA, Keshavarzian A, Hamaker BR.

Mol Nutr Food Res. 2019 Apr;63(7):e1801012. doi: 10.1002/mnfr.201801012. Epub 2019 Jan 27.

PMID:
30659764
14.

Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease.

Dodiya HB, Forsyth CB, Voigt RM, Engen PA, Patel J, Shaikh M, Green SJ, Naqib A, Roy A, Kordower JH, Pahan K, Shannon KM, Keshavarzian A.

Neurobiol Dis. 2018 Dec 21. pii: S0969-9961(18)30768-X. doi: 10.1016/j.nbd.2018.12.012. [Epub ahead of print] Review.

PMID:
30579705
15.

Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice.

Perez-Pardo P, Dodiya HB, Engen PA, Forsyth CB, Huschens AM, Shaikh M, Voigt RM, Naqib A, Green SJ, Kordower JH, Shannon KM, Garssen J, Kraneveld AD, Keshavarzian A.

Gut. 2019 May;68(5):829-843. doi: 10.1136/gutjnl-2018-316844. Epub 2018 Dec 15.

16.

Complete Genome Sequence of Sulfitobacter sp. Strain D7, a Virulent Bacterium Isolated from an Emiliania huxleyi Algal Bloom in the North Atlantic.

Ku C, Barak-Gavish N, Maienschein-Cline M, Green SJ, Vardi A.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01379-18. doi: 10.1128/MRA.01379-18. eCollection 2018 Nov.

17.

Root microbiome response to treated wastewater irrigation.

Zolti A, Green SJ, Ben Mordechay E, Hadar Y, Minz D.

Sci Total Environ. 2019 Mar 10;655:899-907. doi: 10.1016/j.scitotenv.2018.11.251. Epub 2018 Nov 20.

PMID:
30481716
18.

High Frequency of MYD88 L265P Mutation in Primary Ocular Adnexal Marginal Zone Lymphoma and Its Clinicopathologic Correlation: A Study From a Single Institution.

Behdad A, Zhou XY, Gao J, Raparia K, Dittman D, Green SJ, Qi C, Betz B, Bryar P, Chen Q, Chen YH.

Arch Pathol Lab Med. 2019 Apr;143(4):483-493. doi: 10.5858/arpa.2018-0092-OA. Epub 2018 Nov 16.

PMID:
30444439
19.

Duration of postoperative immobilization affects MMP activity at the healing graft-bone interface: Evaluation in a mouse ACL reconstruction model.

Nakagawa Y, Lebaschi AH, Wada S, Green SJE, Wang D, Album ZM, Carballo CB, Deng XH, Rodeo SA.

J Orthop Res. 2019 Feb;37(2):325-334. doi: 10.1002/jor.24177. Epub 2018 Dec 13.

20.

Considerations When Designing a Microbiome Study: Implications for Nursing Science.

Maki KA, Diallo AF, Lockwood MB, Franks AT, Green SJ, Joseph PV.

Biol Res Nurs. 2019 Mar;21(2):125-141. doi: 10.1177/1099800418811639. Epub 2018 Nov 8.

PMID:
30409024
21.

Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP.

Barak-Gavish N, Frada MJ, Ku C, Lee PA, DiTullio GR, Malitsky S, Aharoni A, Green SJ, Rotkopf R, Kartvelishvily E, Sheyn U, Schatz D, Vardi A.

Sci Adv. 2018 Oct 24;4(10):eaau5716. doi: 10.1126/sciadv.aau5716. eCollection 2018 Oct.

22.

Chronic oral application of a periodontal pathogen results in brain inflammation, neurodegeneration and amyloid beta production in wild type mice.

Ilievski V, Zuchowska PK, Green SJ, Toth PT, Ragozzino ME, Le K, Aljewari HW, O'Brien-Simpson NM, Reynolds EC, Watanabe K.

PLoS One. 2018 Oct 3;13(10):e0204941. doi: 10.1371/journal.pone.0204941. eCollection 2018.

23.

Do all HEART Scores beat the same: evaluating the interoperator reliability of the HEART Score.

Niven WGP, Wilson D, Goodacre S, Robertson A, Green SJ, Harris T.

Emerg Med J. 2018 Dec;35(12):732-738. doi: 10.1136/emermed-2018-207540. Epub 2018 Sep 14.

24.

Association of nasal microbiome and asthma control in patients with chronic rhinosinusitis.

Yang HJ, LoSavio PS, Engen PA, Naqib A, Mehta A, Kota R, Khan RJ, Tobin MC, Green SJ, Schleimer RP, Keshavarzian A, Batra PS, Mahdavinia M.

Clin Exp Allergy. 2018 Dec;48(12):1744-1747. doi: 10.1111/cea.13255. Epub 2018 Sep 24. No abstract available.

PMID:
30126004
25.

Complete Genome of Micromonospora sp. Strain B006 Reveals Biosynthetic Potential of a Lake Michigan Actinomycete.

Braesel J, Crnkovic CM, Kunstman KJ, Green SJ, Maienschein-Cline M, Orjala J, Murphy BT, Eustáquio AS.

J Nat Prod. 2018 Sep 28;81(9):2057-2068. doi: 10.1021/acs.jnatprod.8b00394. Epub 2018 Aug 15.

PMID:
30110167
26.

Gut bacterial composition in a mouse model of Parkinson's disease.

Perez-Pardo P, Dodiya HB, Engen PA, Naqib A, Forsyth CB, Green SJ, Garssen J, Keshavarzian A, Kraneveld AD.

Benef Microbes. 2018 Sep 18;9(5):799-814. doi: 10.3920/BM2017.0202. Epub 2018 Aug 13.

PMID:
30099890
27.

Assessing the Efficiency of Cultivation Techniques To Recover Natural Product Biosynthetic Gene Populations from Sediment.

Elfeki M, Alanjary M, Green SJ, Ziemert N, Murphy BT.

ACS Chem Biol. 2018 Aug 17;13(8):2074-2081. doi: 10.1021/acschembio.8b00254. Epub 2018 Jul 10.

PMID:
29932624
28.

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

Vizzotto CS, Lopes FAC, Green SJ, Steindorff AS, Walter JM, Thompson FL, Krüger RH.

Genome Announc. 2018 May 31;6(22). pii: e00451-18. doi: 10.1128/genomeA.00451-18.

29.

Making and Sequencing Heavily Multiplexed, High-Throughput 16S Ribosomal RNA Gene Amplicon Libraries Using a Flexible, Two-Stage PCR Protocol.

Naqib A, Poggi S, Wang W, Hyde M, Kunstman K, Green SJ.

Methods Mol Biol. 2018;1783:149-169. doi: 10.1007/978-1-4939-7834-2_7.

PMID:
29767361
30.

Ketogenic diet enhances neurovascular function with altered gut microbiome in young healthy mice.

Ma D, Wang AC, Parikh I, Green SJ, Hoffman JD, Chlipala G, Murphy MP, Sokola BS, Bauer B, Hartz AMS, Lin AL.

Sci Rep. 2018 Apr 27;8(1):6670. doi: 10.1038/s41598-018-25190-5.

31.

Effects of green tea on miRNA and microbiome of oral epithelium.

Adami GR, Tangney CC, Tang JL, Zhou Y, Ghaffari S, Naqib A, Sinha S, Green SJ, Schwartz JL.

Sci Rep. 2018 Apr 12;8(1):5873. doi: 10.1038/s41598-018-22994-3.

32.

Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease.

Barengolts E, Green SJ, Eisenberg Y, Akbar A, Reddivari B, Layden BT, Dugas L, Chlipala G.

PLoS One. 2018 Mar 29;13(3):e0194171. doi: 10.1371/journal.pone.0194171. eCollection 2018.

33.

Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice.

Xiao L, Van't Land B, Engen PA, Naqib A, Green SJ, Nato A, Leusink-Muis T, Garssen J, Keshavarzian A, Stahl B, Folkerts G.

Sci Rep. 2018 Mar 1;8(1):3829. doi: 10.1038/s41598-018-22052-y.

34.

Dietary Fiber Treatment Corrects the Composition of Gut Microbiota, Promotes SCFA Production, and Suppresses Colon Carcinogenesis.

Bishehsari F, Engen PA, Preite NZ, Tuncil YE, Naqib A, Shaikh M, Rossi M, Wilber S, Green SJ, Hamaker BR, Khazaie K, Voigt RM, Forsyth CB, Keshavarzian A.

Genes (Basel). 2018 Feb 16;9(2). pii: E102. doi: 10.3390/genes9020102.

35.

The nasal microbiome in patients with chronic rhinosinusitis: Analyzing the effects of atopy and bacterial functional pathways in 111 patients.

Mahdavinia M, Engen PA, LoSavio PS, Naqib A, Khan RJ, Tobin MC, Mehta A, Kota R, Preite NZ, Codispoti CD, Tajudeen BA, Schleimer RP, Green SJ, Keshavarzian A, Batra PS.

J Allergy Clin Immunol. 2018 Jul;142(1):287-290.e4. doi: 10.1016/j.jaci.2018.01.033. Epub 2018 Feb 13. No abstract available.

PMID:
29452201
36.

Timing of food intake impacts daily rhythms of human salivary microbiota: a randomized, crossover study.

Collado MC, Engen PA, Bandín C, Cabrera-Rubio R, Voigt RM, Green SJ, Naqib A, Keshavarzian A, Scheer FAJL, Garaulet M.

FASEB J. 2018 Apr;32(4):2060-2072. doi: 10.1096/fj.201700697RR. Epub 2018 Jan 5.

37.

Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline.

Gaby JC, Rishishwar L, Valderrama-Aguirre LC, Green SJ, Valderrama-Aguirre A, Jordan IK, Kostka JE.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01512-17. doi: 10.1128/AEM.01512-17. Print 2018 Feb 15. Erratum in: Appl Environ Microbiol. 2019 May 16;85(11):.

38.

Microbial Diversity of Genital Ulcers of HSV-2 Seropositive Women.

Mehta SD, Pradhan AK, Green SJ, Naqib A, Odoyo-June E, Gaydos CA, Barry S, Landay A, Bailey RC.

Sci Rep. 2017 Nov 13;7(1):15475. doi: 10.1038/s41598-017-15554-8.

39.

Age Drives Distortion of Brain Metabolic, Vascular and Cognitive Functions, and the Gut Microbiome.

Hoffman JD, Parikh I, Green SJ, Chlipala G, Mohney RP, Keaton M, Bauer B, Hartz AMS, Lin AL.

Front Aging Neurosci. 2017 Sep 25;9:298. doi: 10.3389/fnagi.2017.00298. eCollection 2017.

40.

Starch-entrapped microsphere fibers improve bowel habit but do not exhibit prebiotic capacity in those with unsatisfactory bowel habits: a phase I, randomized, double-blind, controlled human trial.

Rasmussen HE, Hamaker B, Rajan KB, Mutlu E, Green SJ, Brown M, Kaur A, Keshavarzian A.

Nutr Res. 2017 Aug;44:27-37. doi: 10.1016/j.nutres.2017.05.015. Epub 2017 Jun 2.

41.

The TLR9 agonist MGN1703 triggers a potent type I interferon response in the sigmoid colon.

Krarup AR, Abdel-Mohsen M, Schleimann MH, Vibholm L, Engen PA, Dige A, Wittig B, Schmidt M, Green SJ, Naqib A, Keshavarzian A, Deng X, Olesen R, Petersen AM, Benfield T, Østergaard L, Rasmussen TA, Agnholt J, Nyengaard JR, Landay A, Søgaard OS, Pillai SK, Tolstrup M, Denton PW.

Mucosal Immunol. 2018 Mar;11(2):449-461. doi: 10.1038/mi.2017.59. Epub 2017 Aug 2.

42.

Investigation of Respiratory Syncytial Virus Outbreak on an Adult Stem Cell Transplant Unit by Use of Whole-Genome Sequencing.

Zhu Y, Zembower TR, Metzger KE, Lei Z, Green SJ, Qi C.

J Clin Microbiol. 2017 Oct;55(10):2956-2963. doi: 10.1128/JCM.00360-17. Epub 2017 Jul 26.

43.

Atopic dermatitis and food sensitization in South African toddlers: Role of fiber and gut microbiota.

Mahdavinia M, Rasmussen HE, Engen P, Van den Berg JP, Davis E, Engen K, Green SJ, Naqib A, Botha M, Gray C, Lunjani N, Hlela C, Basera W, Hobane L, Watkins A, Tobin MC, Landay A, Keshavarzian A, Levin ME.

Ann Allergy Asthma Immunol. 2017 Jun;118(6):742-743.e3. doi: 10.1016/j.anai.2017.04.011. No abstract available.

PMID:
28583264
44.

Genomic and Epidemiological Evidence for Community Origins of Hospital-Onset Methicillin-Resistant Staphylococcus aureus Bloodstream Infections.

Popovich KJ, Snitkin ES, Hota B, Green SJ, Pirani A, Aroutcheva A, Weinstein RA.

J Infect Dis. 2017 Jun 1;215(11):1640-1647. doi: 10.1093/infdis/jiw647.

45.

Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).

Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE.

J Biomol Tech. 2017 Apr;28(1):31-39. doi: 10.7171/jbt.17-2801-004. Epub 2017 Mar 10. Erratum in: J Biomol Tech. 2017 Jul;28(2):93.

46.

Thoracic electrical bioimpedance versus suprasternal Doppler in emergency care.

Elwan MH, Hue J, Green SJ, Eltahan SM, Sims MR, Coats TJ.

Emerg Med Australas. 2017 Aug;29(4):391-393. doi: 10.1111/1742-6723.12765. Epub 2017 Mar 20.

PMID:
28320068
47.

Hepatic deficiency of the pioneer transcription factor FoxA restricts hepatitis B virus biosynthesis by the developmental regulation of viral DNA methylation.

McFadden VC, Shalaby RE, Iram S, Oropeza CE, Landolfi JA, Lyubimov AV, Maienschein-Cline M, Green SJ, Kaestner KH, McLachlan A.

PLoS Pathog. 2017 Feb 24;13(2):e1006239. doi: 10.1371/journal.ppat.1006239. eCollection 2017 Feb.

48.

The Potential Role of Gut-Derived Inflammation in Multiple System Atrophy.

Engen PA, Dodiya HB, Naqib A, Forsyth CB, Green SJ, Voigt RM, Kordower JH, Mutlu EA, Shannon KM, Keshavarzian A.

J Parkinsons Dis. 2017;7(2):331-346. doi: 10.3233/JPD-160991.

PMID:
28234259
49.

Circadian Rhythm and the Gut Microbiome.

Voigt RM, Forsyth CB, Green SJ, Engen PA, Keshavarzian A.

Int Rev Neurobiol. 2016;131:193-205. doi: 10.1016/bs.irn.2016.07.002. Epub 2016 Sep 6. Review.

PMID:
27793218
50.

Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.

Pathak A, Chauhan A, Blom J, Indest KJ, Jung CM, Stothard P, Bera G, Green SJ, Ogram A.

PLoS One. 2016 Aug 17;11(8):e0161032. doi: 10.1371/journal.pone.0161032. eCollection 2016.

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