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Items: 1 to 50 of 247

1.

A novel NGS library preparation method to characterize native termini of fragmented DNA.

Harkins KM, Schaefer NK, Troll CJ, Rao V, Kapp J, Naughton C, Shapiro B, Green RE.

Nucleic Acids Res. 2020 Feb 29. pii: gkaa128. doi: 10.1093/nar/gkaa128. [Epub ahead of print]

PMID:
32112100
2.

Implications of the prevalence and magnitude of sustained declines for determining a minimum threshold for favourable population size.

Green RE, Gilbert G, Wilson JD, Jennings K.

PLoS One. 2020 Feb 12;15(2):e0228742. doi: 10.1371/journal.pone.0228742. eCollection 2020.

3.

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.

Troll CJ, Kapp J, Rao V, Harkins KM, Cole C, Naughton C, Morgan JM, Shapiro B, Green RE.

BMC Genomics. 2019 Dec 27;20(1):1023. doi: 10.1186/s12864-019-6355-0.

4.

The scale of neurodegeneration in moderate-to-severe traumatic brain injury: a systematic review protocol.

Sharma B, Changoor AT, Monteiro L, Colella B, Green REA.

Syst Rev. 2019 Dec 18;8(1):332. doi: 10.1186/s13643-019-1208-0.

5.

A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae.

Ghosh A, Johnson MG, Osmanski AB, Louha S, Bayona-Vásquez NJ, Glenn TC, Gongora J, Green RE, Isberg S, Stevens RD, Ray DA.

Genome Biol Evol. 2020 Jan 1;12(1):3635-3646. doi: 10.1093/gbe/evz269.

6.

Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B.

Nat Commun. 2019 Nov 21;10(1):5276. doi: 10.1038/s41467-019-13096-3.

7.

Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, Villela PMS, Vollmers C, Wayne RK, Eizirik E, Corbett-Detig RB, Green RE, Wilmers CC, Shapiro B.

Nat Commun. 2019 Oct 18;10(1):4769. doi: 10.1038/s41467-019-12741-1. Erratum in: Nat Commun. 2019 Nov 21;10(1):5276.

8.

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O'Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN.

Commun Biol. 2019 Sep 11;2:342. doi: 10.1038/s42003-019-0591-3. eCollection 2019.

9.

Early molecular oxidative stress biomarkers of ischemic penumbra in acute stroke.

Lorenzano S, Rost NS, Khan M, Li H, Batista LM, Chutinet A, Green RE, Thankachan TK, Thornell B, Muzikansky A, Arai K, Som AT, Pham LD, Wu O, Harris GJ, Lo EH, Blumberg JB, Milbury PE, Feske SK, Furie KL.

Neurology. 2019 Sep 24;93(13):e1288-e1298. doi: 10.1212/WNL.0000000000008158. Epub 2019 Aug 27.

PMID:
31455665
10.

Land sparing to make space for species dependent on natural habitats and high nature value farmland.

Feniuk C, Balmford A, Green RE.

Proc Biol Sci. 2019 Aug 28;286(1909):20191483. doi: 10.1098/rspb.2019.1483. Epub 2019 Aug 28.

PMID:
31455194
11.

Comprehensive Neuropsychiatric and Cognitive Characterization of Former Professional Football Players: Implications for Neurorehabilitation.

Terpstra AR, Vasquez BP, Colella B, Tartaglia MC, Tator CH, Mikulis D, Davis KD, Wennberg R, Green REA.

Front Neurol. 2019 Aug 7;10:712. doi: 10.3389/fneur.2019.00712. eCollection 2019.

12.

Financial Management Activity Process: Qualitative inquiry of adults with acquired brain injury.

Engel LL, Beaton DE, Green RE, Dawson DR.

Can J Occup Ther. 2019 Jun;86(3):196-208. doi: 10.1177/0008417419833839. Epub 2019 May 19.

PMID:
31106591
13.

Risks to human health from ammunition-derived lead in Europe.

Green RE, Pain DJ.

Ambio. 2019 Sep;48(9):954-968. doi: 10.1007/s13280-019-01194-x. Epub 2019 May 16.

14.

The biodiversity intactness index may underestimate losses.

Martin PA, Green RE, Balmford A.

Nat Ecol Evol. 2019 Jun;3(6):862-863. doi: 10.1038/s41559-019-0895-1. No abstract available.

PMID:
31061478
15.

Bird conservation and the land sharing-sparing continuum in farmland-dominated landscapes of lowland England.

Finch T, Gillings S, Green RE, Massimino D, Peach WJ, Balmford A.

Conserv Biol. 2019 Oct;33(5):1045-1055. doi: 10.1111/cobi.13316. Epub 2019 Apr 9.

PMID:
30900280
16.

Wildlife, human and environmental costs of using lead ammunition: An economic review and analysis.

Pain DJ, Dickie I, Green RE, Kanstrup N, Cromie R.

Ambio. 2019 Sep;48(9):969-988. doi: 10.1007/s13280-019-01157-2. Epub 2019 Mar 16. Review.

17.

Effects of lead from ammunition on birds and other wildlife: A review and update.

Pain DJ, Mateo R, Green RE.

Ambio. 2019 Sep;48(9):935-953. doi: 10.1007/s13280-019-01159-0. Epub 2019 Mar 16. Review.

18.

Second-degree interatrial block: A case series.

Wang CN, Manzzardo J, Longo D, Green RE, Bayes de Luna A, Baranchuk A.

J Electrocardiol. 2019 May - Jun;54:18-21. doi: 10.1016/j.jelectrocard.2019.02.001. Epub 2019 Feb 7.

PMID:
30844586
19.

Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.

Troll CJ, Putnam NH, Hartley PD, Rice B, Blanchette M, Siddiqui S, Ganbat JO, Powers MP, Ramakrishnan R, Kunder CA, Bustamante CD, Zehnder JL, Green RE, Costa HA.

J Mol Diagn. 2019 May;21(3):375-383. doi: 10.1016/j.jmoldx.2018.11.003. Epub 2018 Dec 31.

20.

New Approaches for Genome Assembly and Scaffolding.

Rice ES, Green RE.

Annu Rev Anim Biosci. 2019 Feb 15;7:17-40. doi: 10.1146/annurev-animal-020518-115344. Epub 2018 Nov 28. Review.

PMID:
30485757
21.

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Kalbfleisch TS, Rice ES, DePriest MS Jr, Walenz BP, Hestand MS, Vermeesch JR, O Connell BL, Fiddes IT, Vershinina AO, Saremi NF, Petersen JL, Finno CJ, Bellone RR, McCue ME, Brooks SA, Bailey E, Orlando L, Green RE, Miller DC, Antczak DF, MacLeod JN.

Commun Biol. 2018 Nov 16;1:197. doi: 10.1038/s42003-018-0199-z. eCollection 2018. Erratum in: Commun Biol. 2019 Sep 11;2:342. Commun Biol. 2019 Sep 11;2(1):342.

22.

Spectral analysis of centre of pressure identifies altered balance control in individuals with moderate-severe traumatic brain injury.

Habib Perez O, Green RE, Mochizuki G.

Disabil Rehabil. 2020 Feb;42(4):519-527. doi: 10.1080/09638288.2018.1501101. Epub 2018 Oct 16.

PMID:
30325695
23.

Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.

Volden R, Palmer T, Byrne A, Cole C, Schmitz RJ, Green RE, Vollmers C.

Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):9726-9731. doi: 10.1073/pnas.1806447115. Epub 2018 Sep 10.

24.

The Risk of Subsequent Atrial Fibrillation in Patients With Atrial Flutter: The Role of Conduction Abnormalities Reflected on the Surface Electrocardiogram.

Green RE, Haseeb S, Baranchuk A.

Can J Cardiol. 2018 Sep;34(9):1234.e3. doi: 10.1016/j.cjca.2018.06.001. Epub 2018 Jun 5. No abstract available.

PMID:
30093298
25.

Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

Tucci S, Vohr SH, McCoy RC, Vernot B, Robinson MR, Barbieri C, Nelson BJ, Fu W, Purnomo GA, Sudoyo H, Eichler EE, Barbujani G, Visscher PM, Akey JM, Green RE.

Science. 2018 Aug 3;361(6401):511-516. doi: 10.1126/science.aar8486.

26.

Carbon Storage and Land-Use Strategies in Agricultural Landscapes across Three Continents.

Williams DR, Phalan B, Feniuk C, Green RE, Balmford A.

Curr Biol. 2018 Aug 6;28(15):2500-2505.e4. doi: 10.1016/j.cub.2018.05.087. Epub 2018 Jul 26.

27.

Epigenetic maintenance of topological domains in the highly rearranged gibbon genome.

Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L.

Genome Res. 2018 Jul;28(7):983-997. doi: 10.1101/gr.233874.117. Epub 2018 Jun 18.

28.

Characterization of Balance Control After Moderate to Severe Traumatic Brain Injury: A Longitudinal Recovery Study.

Perez OH, Green RE, Mochizuki G.

Phys Ther. 2018 Sep 1;98(9):786-795. doi: 10.1093/ptj/pzy065.

PMID:
29878265
29.

Minimizing polymerase biases in metabarcoding.

Nichols RV, Vollmers C, Newsom LA, Wang Y, Heintzman PD, Leighton M, Green RE, Shapiro B.

Mol Ecol Resour. 2018 May 24. doi: 10.1111/1755-0998.12895. [Epub ahead of print]

PMID:
29797549
30.

Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves.

Schweizer RM, Durvasula A, Smith J, Vohr SH, Stahler DR, Galaverni M, Thalmann O, Smith DW, Randi E, Ostrander EA, Green RE, Lohmueller KE, Novembre J, Wayne RK.

Mol Biol Evol. 2018 May 1;35(5):1190-1209. doi: 10.1093/molbev/msy031.

31.

Longitudinal Recovery of Executive Control Functions After Moderate-Severe Traumatic Brain Injury: Examining Trajectories of Variability and Ex-Gaussian Parameters.

Vasquez BP, Tomaszczyk JC, Sharma B, Colella B, Green REA.

Neurorehabil Neural Repair. 2018 Mar;32(3):191-199. doi: 10.1177/1545968318760727. Epub 2018 Mar 21.

PMID:
29561244
32.

Systematic Review of Measurement Property Evidence for 8 Financial Management Instruments in Populations With Acquired Cognitive Impairment.

Engel L, Chui A, Beaton DE, Green RE, Dawson DR.

Arch Phys Med Rehabil. 2018 Sep;99(9):1848-1875. doi: 10.1016/j.apmr.2018.02.004. Epub 2018 Mar 7.

PMID:
29524397
33.

Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age.

Cahill JA, Heintzman PD, Harris K, Teasdale MD, Kapp J, Soares AER, Stirling I, Bradley D, Edwards CJ, Graim K, Kisleika AA, Malev AV, Monaghan N, Green RE, Shapiro B.

Mol Biol Evol. 2018 May 1;35(5):1120-1129. doi: 10.1093/molbev/msy018.

34.

Oxidative Stress Biomarkers of Brain Damage: Hyperacute Plasma F2-Isoprostane Predicts Infarct Growth in Stroke.

Lorenzano S, Rost NS, Khan M, Li H, Lima FO, Maas MB, Green RE, Thankachan TK, Dipietro AJ, Arai K, Som AT, Pham LD, Wu O, Harris GJ, Lo EH, Blumberg JB, Milbury PE, Feske SK, Furie KL.

Stroke. 2018 Mar;49(3):630-637. doi: 10.1161/STROKEAHA.117.018440. Epub 2018 Jan 25.

35.

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui.

Cotoras DD, Murray GGR, Kapp J, Gillespie RG, Griswold C, Simison WB, Green RE, Shapiro B.

Genes (Basel). 2017 Dec 20;8(12). pii: E403. doi: 10.3390/genes8120403.

36.

Motor Function in Former Professional Football Players with History of Multiple Concussions.

Tarazi A, Tator CH, Wennberg R, Ebraheem A, Green REA, Collela B, Saverino C, Khodadadi M, Misquitta K, Tartaglia MC.

J Neurotrauma. 2018 Apr 15;35(8):1003-1007. doi: 10.1089/neu.2017.5290. Epub 2018 Mar 1.

PMID:
29256818
37.

Higher Anxiety Symptoms Predict Progressive Hippocampal Atrophy in the Chronic Stages of Moderate to Severe Traumatic Brain Injury.

Terpstra AR, Girard TA, Colella B, Green REA.

Neurorehabil Neural Repair. 2017 Dec;31(12):1063-1071. doi: 10.1177/1545968317736817. Epub 2017 Nov 19.

PMID:
29153039
38.

Natural selection shaped the rise and fall of passenger pigeon genomic diversity.

Murray GGR, Soares AER, Novak BJ, Schaefer NK, Cahill JA, Baker AJ, Demboski JR, Doll A, Da Fonseca RR, Fulton TL, Gilbert MTP, Heintzman PD, Letts B, McIntosh G, O'Connell BL, Peck M, Pipes ML, Rice ES, Santos KM, Sohrweide AG, Vohr SH, Corbett-Detig RB, Green RE, Shapiro B.

Science. 2017 Nov 17;358(6365):951-954. doi: 10.1126/science.aao0960.

PMID:
29146814
39.

A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).

Kuderna LFK, Tomlinson C, Hillier LW, Tran A, Fiddes IT, Armstrong J, Laayouni H, Gordon D, Huddleston J, Garcia Perez R, Povolotskaya I, Serres Armero A, Gómez Garrido J, Ho D, Ribeca P, Alioto T, Green RE, Paten B, Navarro A, Betranpetit J, Herrero J, Eichler EE, Sharp AJ, Feuk L, Warren WC, Marques-Bonet T.

Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix098.

40.

The use of toxicokinetics and exposure studies to show that carprofen in cattle tissue could lead to secondary toxicity and death in wild vultures.

Naidoo V, Taggart MA, Duncan N, Wolter K, Chipangura J, Green RE, Galligan TH.

Chemosphere. 2018 Jan;190:80-89. doi: 10.1016/j.chemosphere.2017.08.167. Epub 2017 Sep 14.

PMID:
28985539
41.

Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA.

Eerkens JW, Hull B, Goodman J, Evoy A, Kapp JD, Hussain S, Green RE.

PLoS One. 2017 Sep 18;12(9):e0184921. doi: 10.1371/journal.pone.0184921. eCollection 2017.

42.

Bird and bat species' global vulnerability to collision mortality at wind farms revealed through a trait-based assessment.

Thaxter CB, Buchanan GM, Carr J, Butchart SHM, Newbold T, Green RE, Tobias JA, Foden WB, O'Brien S, Pearce-Higgins JW.

Proc Biol Sci. 2017 Sep 13;284(1862). pii: 20170829. doi: 10.1098/rspb.2017.0829. Review.

43.

A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures.

Vohr SH, Gordon R, Eizenga JM, Erlich HA, Calloway CD, Green RE.

Forensic Sci Int Genet. 2017 Sep;30:93-105. doi: 10.1016/j.fsigen.2017.05.007. Epub 2017 May 29.

44.

Economic assessment of wild bird mortality induced by the use of lead gunshot in European wetlands.

Andreotti A, Guberti V, Nardelli R, Pirrello S, Serra L, Volponi S, Green RE.

Sci Total Environ. 2018 Jan 1;610-611:1505-1513. doi: 10.1016/j.scitotenv.2017.06.085. Epub 2017 Jun 23.

PMID:
28648373
45.

Land-use strategies to balance livestock production, biodiversity conservation and carbon storage in Yucatán, Mexico.

Williams DR, Alvarado F, Green RE, Manica A, Phalan B, Balmford A.

Glob Chang Biol. 2017 Dec;23(12):5260-5272. doi: 10.1111/gcb.13791. Epub 2017 Jul 10.

46.

AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data.

Schaefer NK, Shapiro B, Green RE.

BMC Bioinformatics. 2017 Apr 4;18(1):203. doi: 10.1186/s12859-017-1613-0.

47.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.

Rice ES, Kohno S, John JS, Pham S, Howard J, Lareau LF, O'Connell BL, Hickey G, Armstrong J, Deran A, Fiddes I, Platt RN 2nd, Gresham C, McCarthy F, Kern C, Haan D, Phan T, Schmidt C, Sanford JR, Ray DA, Paten B, Guillette LJ Jr, Green RE.

Genome Res. 2017 May;27(5):686-696. doi: 10.1101/gr.213595.116. Epub 2017 Jan 30.

48.

Erratum to "Impact of uncertainty in soil, climatic, and chemical information in a pesticide leaching assessment".

Loague K, Green RE, Giambelluca TW, Liang TC, Yost RS.

J Contam Hydrol. 2016 Nov;194:59-72. doi: 10.1016/j.jconhyd.2016.04.003. Epub 2016 Aug 8.

PMID:
27515363
49.

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley.

Mascher M, Schuenemann VJ, Davidovich U, Marom N, Himmelbach A, Hübner S, Korol A, David M, Reiter E, Riehl S, Schreiber M, Vohr SH, Green RE, Dawson IK, Russell J, Kilian B, Muehlbauer GJ, Waugh R, Fahima T, Krause J, Weiss E, Stein N.

Nat Genet. 2016 Sep;48(9):1089-93. doi: 10.1038/ng.3611. Epub 2016 Jul 18.

PMID:
27428749
50.

Feasibility of online self-administered cognitive training in moderate-severe brain injury.

Sharma B, Tomaszczyk JC, Dawson D, Turner GR, Colella B, Green REA.

Disabil Rehabil. 2017 Jul;39(14):1380-1390. doi: 10.1080/09638288.2016.1195453. Epub 2016 Jul 14.

PMID:
27414703

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