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Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the centrosome.

Fereshteh Z, Schmidt SA, Al-Dossary AA, Accerbi M, Arighi C, Cowart J, Song JL, Green PJ, Choi K, Yoo S, Martin-DeLeon PA.

Sci Rep. 2018 Oct 31;8(1):16094. doi: 10.1038/s41598-018-34409-4.


Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops.

Franke KR, Schmidt SA, Park S, Jeong DH, Accerbi M, Green PJ.

BMC Genomics. 2018 Jul 20;19(1):547. doi: 10.1186/s12864-018-4911-7.


Facial Papules in a Young Woman With a History of Pancreatic and Parathyroid Surgery.

Cottenden J, Green PJ, Stein JD, Walsh NM.

Am J Dermatopathol. 2017 Apr;39(4):316-317. doi: 10.1097/DAD.0000000000000516. No abstract available.


Facial Papules in a Young Woman With a History of Pancreatic and Parathyroid Surgery: Challenge.

Cottenden J, Green PJ, Stein JD, Walsh NM.

Am J Dermatopathol. 2017 Apr;39(4):289-290. doi: 10.1097/DAD.0000000000000515. No abstract available.


Paternity testing and other inference about relationships from DNA mixtures.

Green PJ, Mortera J.

Forensic Sci Int Genet. 2017 May;28:128-137. doi: 10.1016/j.fsigen.2017.02.001. Epub 2017 Feb 16.


Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome of Limulus polyphemus (Arthropoda: Chelicerata).

Battelle BA, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML.

Genome Biol Evol. 2016 Jun 3;8(5):1571-89. doi: 10.1093/gbe/evw100.


The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T, Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F, Michel G, Kersting A, Lauritano C, Lohaus R, Töpel M, Tonon T, Vanneste K, Amirebrahimi M, Brakel J, Boström C, Chovatia M, Grimwood J, Jenkins JW, Jueterbock A, Mraz A, Stam WT, Tice H, Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de Peer Y.

Nature. 2016 Feb 18;530(7590):331-5. doi: 10.1038/nature16548. Epub 2016 Jan 27.


Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana.

Merret R, Nagarajan VK, Carpentier MC, Park S, Favory JJ, Descombin J, Picart C, Charng YY, Green PJ, Deragon JM, Bousquet-Antonelli C.

Nucleic Acids Res. 2015 Apr 30;43(8):4121-32. doi: 10.1093/nar/gkv234. Epub 2015 Apr 6.


Cutaneous manifestations of angioimmunoblastic T-cell lymphoma: clinical and pathological characteristics.

Botros N, Cerroni L, Shawwa A, Green PJ, Greer W, Pasternak S, Walsh NM.

Am J Dermatopathol. 2015 Apr;37(4):274-83. doi: 10.1097/DAD.0000000000000144.


Prevention of alopecia in medical and interventional chemotherapy patients.

Dmytriw AA, Morzycki W, Green PJ.

J Cutan Med Surg. 2015 Jan-Feb;19(1):11-6. doi: 10.2310/7750.2014.13200. Epub 2015 Jan 1. Review.


AtCCR4a and AtCCR4b are Involved in Determining the Poly(A) Length of Granule-bound starch synthase 1 Transcript and Modulating Sucrose and Starch Metabolism in Arabidopsis thaliana.

Suzuki Y, Arae T, Green PJ, Yamaguchi J, Chiba Y.

Plant Cell Physiol. 2015 May;56(5):863-74. doi: 10.1093/pcp/pcv012. Epub 2015 Jan 27.


Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells.

Schmidt SA, Foley PL, Jeong DH, Rymarquis LA, Doyle F, Tenenbaum SA, Belasco JG, Green PJ.

Nucleic Acids Res. 2015 Jan;43(1):309-23. doi: 10.1093/nar/gku1258. Epub 2014 Nov 27.


Plasmacytoid dendritic cells in hypertrophic discoid lupus erythematosus: an objective evaluation of their diagnostic value.

Walsh NM, Lai J, Hanly JG, Green PJ, Bosisio F, Garcias-Ladaria J, Cerroni L.

J Cutan Pathol. 2015 Jan;42(1):32-8. doi: 10.1111/cup.12416. Epub 2014 Dec 15.


Audit of warfarin reversal using a new Octaplex reduced dose protocol.

Hirri HM, Green PJ.

Transfus Apher Sci. 2014 Oct;51(2):141-5. doi: 10.1016/j.transci.2014.08.024. Epub 2014 Sep 1.


Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from deep sequencing of small RNAs and cleaved target RNAs.

Thatcher SR, Burd S, Wright C, Lers A, Green PJ.

Plant Cell Environ. 2015 Jan;38(1):188-200. doi: 10.1111/pce.12393. Epub 2014 Aug 13.


Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

Chávez Montes RA, de Fátima Rosas-Cárdenas F, De Paoli E, Accerbi M, Rymarquis LA, Mahalingam G, Marsch-Martínez N, Meyers BC, Green PJ, de Folter S.

Nat Commun. 2014 Apr 23;5:3722. doi: 10.1038/ncomms4722.


Favre-Racouchot syndrome in a 39-year old female following radiation therapy.

Sutherland AE, Green PJ.

J Cutan Med Surg. 2014 Jan-Feb;18(1):72-4.


Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.


Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage.

Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ.

Plant Physiol. 2013 Jul;162(3):1225-45. doi: 10.1104/pp.113.219873. Epub 2013 May 24.


XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

Nagarajan VK, Jones CI, Newbury SF, Green PJ.

Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):590-603. doi: 10.1016/j.bbagrm.2013.03.005. Epub 2013 Mar 19. Review.


Hypertrophic and ulcerated discoid lupus erythematosus.

Green PJ, Pasternak S.

J Cutan Med Surg. 2012 Nov-Dec;16(6):453-7. Review.


LOGICOIL--multi-state prediction of coiled-coil oligomeric state.

Vincent TL, Green PJ, Woolfson DN.

Bioinformatics. 2013 Jan 1;29(1):69-76. doi: 10.1093/bioinformatics/bts648. Epub 2012 Nov 4.


Visual diagnosis: abnormal nails in an infant.

Cunningham NP, Green PJ.

Pediatr Rev. 2012 Nov;33(11):e72-5. doi: 10.1542/pir.33-11-e72. No abstract available.


Methods for validation of miRNA sequence variants and the cleavage of their targets.

Jeong DH, Green PJ.

Methods. 2012 Oct;58(2):135-43. doi: 10.1016/j.ymeth.2012.08.005. Epub 2012 Aug 17.



Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA, Brawley SH.

J Phycol. 2012 Aug;48(4):883-96. doi: 10.1111/j.1529-8817.2012.01138.x. Epub 2012 Apr 12.


Broken livedo: clue to a systemic disease.

Creaser J, Green PJ, Hanly JG, Walsh NM.

Am J Dermatopathol. 2012 Oct;34(7):755-6, 770-1. No abstract available.


Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome.

Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y.

Genes Brain Behav. 2012 Aug;11(6):660-70. doi: 10.1111/j.1601-183X.2012.00782.x. Epub 2012 Apr 6.


Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.

Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ.

Plant Cell. 2011 Dec;23(12):4185-207. doi: 10.1105/tpc.111.089045. Epub 2011 Dec 9.


MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC.

Genes Dev. 2011 Dec 1;25(23):2540-53. doi: 10.1101/gad.177527.111.


The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.


Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.

Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X.

Plant J. 2012 Feb;69(3):462-74. doi: 10.1111/j.1365-313X.2011.04805.x. Epub 2011 Nov 23.


Etanercept-induced cutaneous and pulmonary sarcoid-like granulomas resolving with adalimumab.

Burns AM, Green PJ, Pasternak S.

J Cutan Pathol. 2012 Feb;39(2):289-93. doi: 10.1111/j.1600-0560.2011.01795.x. Epub 2011 Sep 7.


The man with tight legs: challenge.

Green PJ, Pasternak S, MacEachern R, Walsh NM.

Am J Dermatopathol. 2011 Aug;33(6):614-5, 631-2. doi: 10.1097/DAD.0b013e3182115735. No abstract available.


SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences.

Armstrong CT, Vincent TL, Green PJ, Woolfson DN.

Bioinformatics. 2011 Jul 15;27(14):1908-14. doi: 10.1093/bioinformatics/btr299. Epub 2011 May 16.


A microRNA of infectious laryngotracheitis virus can downregulate and direct cleavage of ICP4 mRNA.

Waidner LA, Burnside J, Anderson AS, Bernberg EL, German MA, Meyers BC, Green PJ, Morgan RW.

Virology. 2011 Mar 1;411(1):25-31. doi: 10.1016/j.virol.2010.12.023. Epub 2011 Jan 12.


Enumerating the junction trees of a decomposable graph.

Thomas A, Green PJ.

J Comput Graph Stat. 2009 Dec 1;18(4):930-940.


Cocaine-related retiform purpura: evidence to incriminate the adulterant, levamisole.

Walsh NM, Green PJ, Burlingame RW, Pasternak S, Hanly JG.

J Cutan Pathol. 2010 Dec;37(12):1212-9. doi: 10.1111/j.1600-0560.2010.01613.x. Epub 2010 Aug 25.


Novel case of generalized multinucleate cell angiohistiocytoma.

O'Blenes CA, Walsh NM, Green PJ, Tremaine RD.

J Cutan Med Surg. 2010 Jul-Aug;14(4):178-80.


RNA-mediated trans-communication can establish paramutation at the b1 locus in maize.

Arteaga-Vazquez M, Sidorenko L, Rabanal FA, Shrivistava R, Nobuta K, Green PJ, Meyers BC, Chandler VL.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12986-91. doi: 10.1073/pnas.1007972107. Epub 2010 Jun 29.


Granulomatous vasculitis in Crohn's disease: a clinicopathologic correlate of two unusual cases.

Burns AM, Walsh N, Green PJ.

J Cutan Pathol. 2010 Oct;37(10):1077-83. doi: 10.1111/j.1600-0560.2010.01546.x. Epub 2010 Apr 26.


Arabidopsis thaliana XRN2 is required for primary cleavage in the pre-ribosomal RNA.

Zakrzewska-Placzek M, Souret FF, Sobczyk GJ, Green PJ, Kufel J.

Nucleic Acids Res. 2010 Jul;38(13):4487-502. doi: 10.1093/nar/gkq172. Epub 2010 Mar 24.


Prediction of novel miRNAs and associated target genes in Glycine max.

Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S14. doi: 10.1186/1471-2105-11-S1-S14.


Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.

Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4477-82. doi: 10.1073/pnas.0909571107. Epub 2010 Feb 8.


Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

Ibrahim F, Rymarquis LA, Kim EJ, Becker J, Balassa E, Green PJ, Cerutti H.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3906-11. doi: 10.1073/pnas.0912632107. Epub 2010 Feb 8.


Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.

Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME.

Genome Biol. 2010;11(2):R12. doi: 10.1186/gb-2010-11-2-r12. Epub 2010 Feb 3.


Detailed analysis of a contiguous 22-Mb region of the maize genome.

Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20.


Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs.

Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ, Hutvagner G.

RNA. 2009 Dec;15(12):2147-60. doi: 10.1261/rna.1738409. Epub 2009 Oct 22.


Abiotic stress-associated miRNAs: detection and functional analysis.

Jeong DH, German MA, Rymarquis LA, Thatcher SR, Green PJ.

Methods Mol Biol. 2010;592:203-30. doi: 10.1007/978-1-60327-005-2_14.


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