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Proteomic Technologies for Deciphering Local and Global Protein Interactions.

Greco TM, Kennedy MA, Cristea IM.

Trends Biochem Sci. 2020 Feb 5. pii: S0968-0004(20)30025-6. doi: 10.1016/j.tibs.2020.01.003. [Epub ahead of print] No abstract available.


Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology.

Hashimoto Y, Greco TM, Cristea IM.

Adv Exp Med Biol. 2019;1140:143-154. doi: 10.1007/978-3-030-15950-4_8. Review.


Protein interactions and consensus clustering analysis uncover insights into herpesvirus virion structure and function relationships.

Hernández Durán A, Greco TM, Vollmer B, Cristea IM, Grünewald K, Topf M.

PLoS Biol. 2019 Jun 14;17(6):e3000316. doi: 10.1371/journal.pbio.3000316. eCollection 2019 Jun.


Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics.

Federspiel JD, Greco TM, Lum KK, Cristea IM.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S92-S113. doi: 10.1074/mcp.RA118.001253. Epub 2019 Apr 30.


Bone vascular niche E-selectin induces mesenchymal-epithelial transition and Wnt activation in cancer cells to promote bone metastasis.

Esposito M, Mondal N, Greco TM, Wei Y, Spadazzi C, Lin SC, Zheng H, Cheung C, Magnani JL, Lin SH, Cristea IM, Sackstein R, Kang Y.

Nat Cell Biol. 2019 May;21(5):627-639. doi: 10.1038/s41556-019-0309-2. Epub 2019 Apr 15.


Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos.

Hashimoto Y, Kinoshita N, Greco TM, Federspiel JD, Jean Beltran PM, Ueno N, Cristea IM.

Cell Syst. 2019 Mar 27;8(3):226-241.e7. doi: 10.1016/j.cels.2019.01.006. Epub 2019 Mar 6.


YfmK is an Nε-lysine acetyltransferase that directly acetylates the histone-like protein HBsu in Bacillus subtilis.

Carabetta VJ, Greco TM, Cristea IM, Dubnau D.

Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3752-3757. doi: 10.1073/pnas.1815511116. Epub 2019 Feb 11.


Lip Augmentation.

DeJoseph LM, Agarwal A, Greco TM.

Facial Plast Surg Clin North Am. 2018 May;26(2):193-203. doi: 10.1016/j.fsc.2017.12.005. Review.


Initiating Events in Direct Cardiomyocyte Reprogramming.

Sauls K, Greco TM, Wang L, Zou M, Villasmil M, Qian L, Cristea IM, Conlon FL.

Cell Rep. 2018 Feb 13;22(7):1913-1922. doi: 10.1016/j.celrep.2018.01.047.


Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.

Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, Wall RV, Hone E, Deng L, Dheer Y, Abbasi M, Rezaeian M, Braidy N, You Y, Salekdeh GH, Haynes PA, Molloy MP, Martins R, Cristea IM, Gygi SP, Graham SL, Gupta VK.

Sci Rep. 2017 Oct 4;7(1):12685. doi: 10.1038/s41598-017-12858-7.


Formation of a TBX20-CASZ1 protein complex is protective against dilated cardiomyopathy and critical for cardiac homeostasis.

Kennedy L, Kaltenbrun E, Greco TM, Temple B, Herring LE, Cristea IM, Conlon FL.

PLoS Genet. 2017 Sep 25;13(9):e1007011. doi: 10.1371/journal.pgen.1007011. eCollection 2017 Sep.


Sirtuin Lipoamidase Activity Is Conserved in Bacteria as a Regulator of Metabolic Enzyme Complexes.

Rowland EA, Greco TM, Snowden CK, McCabe AL, Silhavy TJ, Cristea IM.

mBio. 2017 Sep 12;8(5). pii: e01096-17. doi: 10.1128/mBio.01096-17.


Proteomics Tracing the Footsteps of Infectious Disease.

Greco TM, Cristea IM.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S5-S14. doi: 10.1074/mcp.O116.066001. Epub 2017 Feb 5. Review.


Three-dimensional Facial Anatomy: Structure and Function as It Relates to Injectable Neuromodulators and Soft Tissue Fillers.

Beer JI, Sieber DA, Scheuer JF 3rd, Greco TM.

Plast Reconstr Surg Glob Open. 2016 Dec 14;4(12 Suppl Anatomy and Safety in Cosmetic Medicine: Cosmetic Bootcamp):e1175. doi: 10.1097/GOX.0000000000001175. eCollection 2016 Dec.


Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements.

Viktorovskaya OV, Greco TM, Cristea IM, Thompson SR.

PLoS Negl Trop Dis. 2016 Aug 24;10(8):e0004921. doi: 10.1371/journal.pntd.0004921. eCollection 2016 Aug.


Stimulatory effects of advanced glycation endproducts (AGEs) on fibronectin matrix assembly.

Pastino AK, Greco TM, Mathias RA, Cristea IM, Schwarzbauer JE.

Matrix Biol. 2017 May;59:39-53. doi: 10.1016/j.matbio.2016.07.003. Epub 2016 Jul 15.


HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1.

Ashford P, Hernandez A, Greco TM, Buch A, Sodeik B, Cristea IM, Grünewald K, Shepherd A, Topf M.

Mol Cell Proteomics. 2016 Sep;15(9):2939-53. doi: 10.1074/mcp.M116.058552. Epub 2016 Jul 6.


Temporal Regulation of the Bacillus subtilis Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth.

Carabetta VJ, Greco TM, Tanner AW, Cristea IM, Dubnau D.

mSystems. 2016 May;1(3). pii: e00005-16. Epub 2016 May 31.


HIV-host interactome revealed directly from infected cells.

Luo Y, Jacobs EY, Greco TM, Mohammed KD, Tong T, Keegan S, Binley JM, Cristea IM, Fenyö D, Rout MP, Chait BT, Muesing MA.

Nat Microbiol. 2016 Jul;1(7):16068. Epub 2016 May 23.


Identification of Sirtuin4 (SIRT4) Protein Interactions: Uncovering Candidate Acyl-Modified Mitochondrial Substrates and Enzymatic Regulators.

Mathias RA, Greco TM, Cristea IM.

Methods Mol Biol. 2016;1436:213-39. doi: 10.1007/978-1-4939-3667-0_15.


Determining the Composition and Stability of Protein Complexes Using an Integrated Label-Free and Stable Isotope Labeling Strategy.

Greco TM, Guise AJ, Cristea IM.

Methods Mol Biol. 2016;1410:39-63. doi: 10.1007/978-1-4939-3524-6_3.


The Cardiac TBX5 Interactome Reveals a Chromatin Remodeling Network Essential for Cardiac Septation.

Waldron L, Steimle JD, Greco TM, Gomez NC, Dorr KM, Kweon J, Temple B, Yang XH, Wilczewski CM, Davis IJ, Cristea IM, Moskowitz IP, Conlon FL.

Dev Cell. 2016 Feb 8;36(3):262-75. doi: 10.1016/j.devcel.2016.01.009.


Two Modes of the Axonal Interferon Response Limit Alphaherpesvirus Neuroinvasion.

Song R, Koyuncu OO, Greco TM, Diner BA, Cristea IM, Enquist LW.

mBio. 2016 Feb 2;7(1):e02145-15. doi: 10.1128/mBio.02145-15.


The Biochemical Evolution of Protein Complexes.

Greco TM, Cristea IM.

Trends Biochem Sci. 2016 Jan;41(1):4-6. doi: 10.1016/j.tibs.2015.11.007. Epub 2015 Dec 9.


The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression.

Giguère SS, Guise AJ, Jean Beltran PM, Joshi PM, Greco TM, Quach OL, Kong J, Cristea IM.

Mol Cell Proteomics. 2016 Mar;15(3):791-809. doi: 10.1074/mcp.M115.054619. Epub 2015 Dec 9.


Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences.

Vieira Ldo N, Dos Anjos KG, Faoro H, Fraga HP, Greco TM, Pedrosa Fde O, de Souza EM, Rogalski M, de Souza RF, Guerra MP.

Curr Genet. 2016 May;62(2):443-53. doi: 10.1007/s00294-015-0549-z. Epub 2015 Dec 7.


The number of alphaherpesvirus particles infecting axons and the axonal protein repertoire determines the outcome of neuronal infection.

Koyuncu OO, Song R, Greco TM, Cristea IM, Enquist LW.

mBio. 2015 Mar 24;6(2). pii: e00276-15. doi: 10.1128/mBio.00276-15.


DNA methyltransferase DNMT3A associates with viral proteins and impacts HSV-1 infection.

Rowles DL, Tsai YC, Greco TM, Lin AE, Li M, Yeh J, Cristea IM.

Proteomics. 2015 Jun;15(12):1968-82. doi: 10.1002/pmic.201500035. Epub 2015 May 7.


The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA.

Diner BA, Li T, Greco TM, Crow MS, Fuesler JA, Wang J, Cristea IM.

Mol Syst Biol. 2015 Feb 9;11(1):787. doi: 10.15252/msb.20145808.


Sirtuin 4 is a lipoamidase regulating pyruvate dehydrogenase complex activity.

Mathias RA, Greco TM, Oberstein A, Budayeva HG, Chakrabarti R, Rowland EA, Kang Y, Shenk T, Cristea IM.

Cell. 2014 Dec 18;159(7):1615-25. doi: 10.1016/j.cell.2014.11.046.


The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology.

Greco TM, Diner BA, Cristea IM.

Annu Rev Virol. 2014 Nov;1(1):581-604. doi: 10.1146/annurev-virology-031413-085527. Epub 2014 Jul 14.


Proteomic profiling of cardiac tissue by isolation of nuclei tagged in specific cell types (INTACT).

Amin NM, Greco TM, Kuchenbrod LM, Rigney MM, Chung MI, Wallingford JB, Cristea IM, Conlon FL.

Development. 2014 Feb;141(4):962-73. doi: 10.1242/dev.098327.


Sirtuin 7 plays a role in ribosome biogenesis and protein synthesis.

Tsai YC, Greco TM, Cristea IM.

Mol Cell Proteomics. 2014 Jan;13(1):73-83. doi: 10.1074/mcp.M113.031377. Epub 2013 Oct 10.


A Gro/TLE-NuRD corepressor complex facilitates Tbx20-dependent transcriptional repression.

Kaltenbrun E, Greco TM, Slagle CE, Kennedy LM, Li T, Cristea IM, Conlon FL.

J Proteome Res. 2013 Dec 6;12(12):5395-409. doi: 10.1021/pr400818c. Epub 2013 Oct 3.


A proteomic perspective of inbuilt viral protein regulation: pUL46 tegument protein is targeted for degradation by ICP0 during herpes simplex virus type 1 infection.

Lin AE, Greco TM, Döhner K, Sodeik B, Cristea IM.

Mol Cell Proteomics. 2013 Nov;12(11):3237-52. doi: 10.1074/mcp.M113.030866. Epub 2013 Aug 12.


Glycoproteins gE and gI are required for efficient KIF1A-dependent anterograde axonal transport of alphaherpesvirus particles in neurons.

Kratchmarov R, Kramer T, Greco TM, Taylor MP, Ch'ng TH, Cristea IM, Enquist LW.

J Virol. 2013 Sep;87(17):9431-40. doi: 10.1128/JVI.01317-13. Epub 2013 Jun 26.


The functional interactome landscape of the human histone deacetylase family.

Joshi P, Greco TM, Guise AJ, Luo Y, Yu F, Nesvizhskii AI, Cristea IM.

Mol Syst Biol. 2013;9:672. doi: 10.1038/msb.2013.26.


Thiouracil cross-linking mass spectrometry: a cell-based method to identify host factors involved in viral amplification.

Lenarcic EM, Landry DM, Greco TM, Cristea IM, Thompson SR.

J Virol. 2013 Aug;87(15):8697-712. doi: 10.1128/JVI.00950-13. Epub 2013 Jun 5.


A complex of YlbF, YmcA and YaaT regulates sporulation, competence and biofilm formation by accelerating the phosphorylation of Spo0A.

Carabetta VJ, Tanner AW, Greco TM, Defrancesco M, Cristea IM, Dubnau D.

Mol Microbiol. 2013 Apr;88(2):283-300. doi: 10.1111/mmi.12186. Epub 2013 Mar 12.


Kinesin-3 mediates axonal sorting and directional transport of alphaherpesvirus particles in neurons.

Kramer T, Greco TM, Taylor MP, Ambrosini AE, Cristea IM, Enquist LW.

Cell Host Microbe. 2012 Dec 13;12(6):806-14. doi: 10.1016/j.chom.2012.10.013.


Immunoglobulins against tyrosine-nitrated epitopes in coronary artery disease.

Thomson L, Tenopoulou M, Lightfoot R, Tsika E, Parastatidis I, Martinez M, Greco TM, Doulias PT, Wu Y, Tang WH, Hazen SL, Ischiropoulos H.

Circulation. 2012 Nov 13;126(20):2392-401. doi: 10.1161/CIRCULATIONAHA.112.103796. Epub 2012 Oct 18.


Complementary proteomic analysis of protein complexes.

Greco TM, Miteva Y, Conlon FL, Cristea IM.

Methods Mol Biol. 2012;917:391-407. doi: 10.1007/978-1-61779-992-1_22.


Immunoisolation of protein complexes from Xenopus.

Conlon FL, Miteva Y, Kaltenbrun E, Waldron L, Greco TM, Cristea IM.

Methods Mol Biol. 2012;917:369-90. doi: 10.1007/978-1-61779-992-1_21.


Aurora B-dependent regulation of class IIa histone deacetylases by mitotic nuclear localization signal phosphorylation.

Guise AJ, Greco TM, Zhang IY, Yu F, Cristea IM.

Mol Cell Proteomics. 2012 Nov;11(11):1220-9. doi: 10.1074/mcp.M112.021030. Epub 2012 Aug 2.


Increased expression of LDL receptor-related protein 1 during human cytomegalovirus infection reduces virion cholesterol and infectivity.

Gudleski-O'Regan N, Greco TM, Cristea IM, Shenk T.

Cell Host Microbe. 2012 Jul 19;12(1):86-96. doi: 10.1016/j.chom.2012.05.012.


Functional proteomics establishes the interaction of SIRT7 with chromatin remodeling complexes and expands its role in regulation of RNA polymerase I transcription.

Tsai YC, Greco TM, Boonmee A, Miteva Y, Cristea IM.

Mol Cell Proteomics. 2012 May;11(5):60-76. doi: 10.1074/mcp.A111.015156.


Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S.

Nature. 2012 Apr 8;485(7397):264-8. doi: 10.1038/nature11013.


Injectable fillers for volume replacement in the aging face.

Greco TM, Antunes MB, Yellin SA.

Facial Plast Surg. 2012 Feb;28(1):8-20. doi: 10.1055/s-0032-1305786. Epub 2012 Mar 14.


Proteomic identification of S-nitrosylated Golgi proteins: new insights into endothelial cell regulation by eNOS-derived NO.

Sangwung P, Greco TM, Wang Y, Ischiropoulos H, Sessa WC, Iwakiri Y.

PLoS One. 2012;7(2):e31564. doi: 10.1371/journal.pone.0031564. Epub 2012 Feb 21.


Co-compartmentalization of the astroglial glutamate transporter, GLT-1, with glycolytic enzymes and mitochondria.

Genda EN, Jackson JG, Sheldon AL, Locke SF, Greco TM, O'Donnell JC, Spruce LA, Xiao R, Guo W, Putt M, Seeholzer S, Ischiropoulos H, Robinson MB.

J Neurosci. 2011 Dec 14;31(50):18275-88. doi: 10.1523/JNEUROSCI.3305-11.2011.

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