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Items: 1 to 50 of 71

1.

Quantitative genetic parameters for growth and wood properties in Eucalyptus "urograndis" hybrid using near-infrared phenotyping and genome-wide SNP-based relationships.

Marco de Lima B, Cappa EP, Silva-Junior OB, Garcia C, Mansfield SD, Grattapaglia D.

PLoS One. 2019 Jun 24;14(6):e0218747. doi: 10.1371/journal.pone.0218747. eCollection 2019.

2.

Improving genomic prediction of growth and wood traits in Eucalyptus using phenotypes from non-genotyped trees by single-step GBLUP.

Cappa EP, de Lima BM, da Silva-Junior OB, Garcia CC, Mansfield SD, Grattapaglia D.

Plant Sci. 2019 Jul;284:9-15. doi: 10.1016/j.plantsci.2019.03.017. Epub 2019 Mar 28.

PMID:
31084883
3.

A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree.

Collevatti RG, Novaes E, Silva-Junior OB, Vieira LD, Lima-Ribeiro MS, Grattapaglia D.

Heredity (Edinb). 2019 Aug;123(2):117-137. doi: 10.1038/s41437-019-0188-0. Epub 2019 Feb 12.

4.

Hardwood Tree Genomics: Unlocking Woody Plant Biology.

Tuskan GA, Groover AT, Schmutz J, DiFazio SP, Myburg A, Grattapaglia D, Smart LB, Yin T, Aury JM, Kremer A, Leroy T, Le Provost G, Plomion C, Carlson JE, Randall J, Westbrook J, Grimwood J, Muchero W, Jacobson D, Michener JK.

Front Plant Sci. 2018 Dec 17;9:1799. doi: 10.3389/fpls.2018.01799. eCollection 2018.

5.

Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding.

Grattapaglia D, Silva-Junior OB, Resende RT, Cappa EP, Müller BSF, Tan B, Isik F, Ratcliffe B, El-Kassaby YA.

Front Plant Sci. 2018 Nov 22;9:1693. doi: 10.3389/fpls.2018.01693. eCollection 2018. Review.

6.

Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications.

Inglis PW, Pappas MCR, Resende LV, Grattapaglia D.

PLoS One. 2018 Oct 18;13(10):e0206085. doi: 10.1371/journal.pone.0206085. eCollection 2018.

7.

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations.

Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D.

New Phytol. 2019 Jan;221(2):818-833. doi: 10.1111/nph.15449. Epub 2018 Sep 25.

PMID:
30252143
8.
9.

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus.

Butler JB, Freeman JS, Potts BM, Vaillancourt RE, Grattapaglia D, Silva-Junior OB, Simmons BA, Healey AL, Schmutz J, Barry KW, Lee DJ, Henry RJ, King GJ, Baten A, Shepherd M.

Heredity (Edinb). 2018 Jul;121(1):87-104. doi: 10.1038/s41437-018-0058-1. Epub 2018 Mar 10.

10.

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus.

Tan B, Grattapaglia D, Wu HX, Ingvarsson PK.

Plant Sci. 2018 Feb;267:84-93. doi: 10.1016/j.plantsci.2017.11.011. Epub 2017 Nov 28.

PMID:
29362102
11.

Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree.

Silva-Junior OB, Grattapaglia D, Novaes E, Collevatti RG.

Gigascience. 2018 Jan 1;7(1):1-16. doi: 10.1093/gigascience/gix125.

12.

Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1.

Fernandes GR, Barbosa AEAD, Almeida RN, Castro FFDS, da Ponte MCP, Faria-Junior C, Müller FMP, Viana AAB, Grattapaglia D, Franco OL, Alencar SA, Dias SC.

Front Microbiol. 2017 Oct 23;8:1993. doi: 10.3389/fmicb.2017.01993. eCollection 2017.

13.

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model.

Resende RT, Resende MDV, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D.

Heredity (Edinb). 2017 Oct;119(4):245-255. doi: 10.1038/hdy.2017.37. Epub 2017 Jul 5.

14.

Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus.

Müller BSF, Neves LG, de Almeida Filho JE, Resende MFR Jr, Muñoz PR, Dos Santos PET, Filho EP, Kirst M, Grattapaglia D.

BMC Genomics. 2017 Jul 11;18(1):524. doi: 10.1186/s12864-017-3920-2.

15.

Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids.

Tan B, Grattapaglia D, Martins GS, Ferreira KZ, Sundberg B, Ingvarsson PK.

BMC Plant Biol. 2017 Jun 29;17(1):110. doi: 10.1186/s12870-017-1059-6.

16.

Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus.

Resende RT, Resende MD, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D.

New Phytol. 2017 Feb;213(3):1287-1300. doi: 10.1111/nph.14266. Epub 2016 Nov 7.

17.

Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae.

Pappas Mde C, Pappas GJ Jr, Grattapaglia D.

BMC Genomics. 2015 Dec 29;16:1113. doi: 10.1186/s12864-015-2322-6.

18.

Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.

Hedrick PW, Hellsten U, Grattapaglia D.

New Phytol. 2016 Jan;209(2):600-11. doi: 10.1111/nph.13639. Epub 2015 Sep 10.

19.

Parentage Reconstruction in Eucalyptus nitens Using SNPs and Microsatellite Markers: A Comparative Analysis of Marker Data Power and Robustness.

Telfer EJ, Stovold GT, Li Y, Silva-Junior OB, Grattapaglia DG, Dungey HS.

PLoS One. 2015 Jul 9;10(7):e0130601. doi: 10.1371/journal.pone.0130601. eCollection 2015.

21.

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species.

Silva-Junior OB, Faria DA, Grattapaglia D.

New Phytol. 2015 Jun;206(4):1527-40. doi: 10.1111/nph.13322. Epub 2015 Feb 13.

22.

A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence.

Grattapaglia D, Mamani EM, Silva-Junior OB, Faria DA.

Mol Ecol Resour. 2015 Mar;15(2):437-48. doi: 10.1111/1755-0998.12317. Epub 2014 Sep 6.

PMID:
25146326
23.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
24.

Impacts of population structure and analytical models in genome-wide association studies of complex traits in forest trees: a case study in Eucalyptus globulus.

Cappa EP, El-Kassaby YA, Garcia MN, Acuña C, Borralho NM, Grattapaglia D, Marcucci Poltri SN.

PLoS One. 2013 Nov 25;8(11):e81267. doi: 10.1371/journal.pone.0081267. eCollection 2013.

25.

Agriculture: Feeding the future.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D.

Nature. 2013 Jul 4;499(7456):23-4. doi: 10.1038/499023a. No abstract available.

PMID:
23823779
26.

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

Petroli CD, Sansaloni CP, Carling J, Steane DA, Vaillancourt RE, Myburg AA, da Silva OB Jr, Pappas GJ Jr, Kilian A, Grattapaglia D.

PLoS One. 2012;7(9):e44684. doi: 10.1371/journal.pone.0044684. Epub 2012 Sep 11.

27.

A reference linkage map for Eucalyptus.

Hudson CJ, Freeman JS, Kullan AR, Petroli CD, Sansaloni CP, Kilian A, Detering F, Grattapaglia D, Potts BM, Myburg AA, Vaillancourt RE.

BMC Genomics. 2012 Jun 15;13:240. doi: 10.1186/1471-2164-13-240.

28.

Genetic diversity and assessment of 23 microsatellite markers for parentage testing of Santa Inês hair sheep in Brazil.

Souza CA, Paiva SR, McManus CM, Azevedo HC, Mariante AS, Grattapaglia D.

Genet Mol Res. 2012 May 8;11(2):1217-29. doi: 10.4238/2012.May.8.4.

29.

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees.

Resende MD, Resende MF Jr, Sansaloni CP, Petroli CD, Missiaggia AA, Aguiar AM, Abad JM, Takahashi EK, Rosado AM, Faria DA, Pappas GJ Jr, Kilian A, Grattapaglia D.

New Phytol. 2012 Apr;194(1):116-28. doi: 10.1111/j.1469-8137.2011.04038.x. Epub 2012 Feb 6.

30.

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments.

Resende MF Jr, Muñoz P, Acosta JJ, Peter GF, Davis JM, Grattapaglia D, Resende MD, Kirst M.

New Phytol. 2012 Feb;193(3):617-24. doi: 10.1111/j.1469-8137.2011.03895.x. Epub 2011 Oct 5. Erratum in: New Phytol. 2012 Mar;193(4):1099.

31.

Population analysis of vitamin D receptor polymorphisms and the role of genetic ancestry in an admixed population.

Lins TC, Vieira RG, Grattapaglia D, Pereira RW.

Genet Mol Biol. 2011 Jul;34(3):377-85. doi: 10.1590/S1415-47572011000300003. Epub 2011 Jul 1.

32.

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus.

Neves LG, Mc Mamani E, Alfenas AC, Kirst M, Grattapaglia D.

BMC Genomics. 2011 Apr 14;12:189. doi: 10.1186/1471-2164-12-189.

33.

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species.

Grattapaglia D, Silva-Junior OB, Kirst M, de Lima BM, Faria DA, Pappas GJ Jr.

BMC Plant Biol. 2011 Apr 14;11:65. doi: 10.1186/1471-2229-11-65.

34.

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.

Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J.

BMC Genomics. 2011 Mar 4;12:137. doi: 10.1186/1471-2164-12-137.

35.

Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping.

Steane DA, Nicolle D, Sansaloni CP, Petroli CD, Carling J, Kilian A, Myburg AA, Grattapaglia D, Vaillancourt RE.

Mol Phylogenet Evol. 2011 Apr;59(1):206-24. doi: 10.1016/j.ympev.2011.02.003. Epub 2011 Feb 16.

PMID:
21310251
36.

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus.

Sansaloni CP, Petroli CD, Carling J, Hudson CJ, Steane DA, Myburg AA, Grattapaglia D, Vaillancourt RE, Kilian A.

Plant Methods. 2010 Jun 30;6:16. doi: 10.1186/1746-4811-6-16.

37.

A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of eucalyptus.

Faria DA, Mamani EM, Pappas MR, Pappas GJ Jr, Grattapaglia D.

J Hered. 2010 Jul-Aug;101(4):512-20. doi: 10.1093/jhered/esq024. Epub 2010 Mar 15.

PMID:
20231265
38.

Allele and haplotype frequency distribution in PTPN22 gene across variable ethnic groups: Implications for genetic association studies for autoimmune diseases.

Lins TC, Vieira RG, Grattapaglia D, Pereira RW.

Autoimmunity. 2010 Jun;43(4):308-16. doi: 10.3109/08916930903405883.

PMID:
20166877
39.

Genetic composition of Brazilian population samples based on a set of twenty-eight ancestry informative SNPs.

Lins TC, Vieira RG, Abreu BS, Grattapaglia D, Pereira RW.

Am J Hum Biol. 2010 Mar-Apr;22(2):187-92. doi: 10.1002/ajhb.20976.

PMID:
19639555
40.

Vitamin-d-receptor genotypes and bone-mineral density in postmenopausal women: interaction with physical activity.

Gentil P, de Lima Lins TC, Lima RM, de Abreu BS, Grattapaglia D, Bottaro M, de Oliveira RJ, Pereira RW.

J Aging Phys Act. 2009 Jan;17(1):31-45.

PMID:
19299837
41.

Genomics of growth traits in forest trees.

Grattapaglia D, Plomion C, Kirst M, Sederoff RR.

Curr Opin Plant Biol. 2009 Apr;12(2):148-56. doi: 10.1016/j.pbi.2008.12.008. Epub 2009 Jan 29. Review.

PMID:
19186096
42.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

BMC Genomics. 2008 Jun 30;9:312. doi: 10.1186/1471-2164-9-312.

43.

Eucalyptus applied genomics: from gene sequences to breeding tools.

Grattapaglia D, Kirst M.

New Phytol. 2008;179(4):911-29. doi: 10.1111/j.1469-8137.2008.02503.x. Epub 2008 Jun 5. Review.

44.

Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil.

Egito AA, Paiva SR, Albuquerque Mdo S, Mariante AS, Almeida LD, Castro SR, Grattapaglia D.

BMC Genet. 2007 Dec 7;8:83.

45.

Lack of association between vitamin D receptor genotypes and haplotypes with fat-free mass in postmenopausal Brazilian women.

Moreno Lima R, Silva de Abreu B, Gentil P, Cesar de Lima Lins T, Grattapaglia D, Pereira RW, Jacó de Oliveira R.

J Gerontol A Biol Sci Med Sci. 2007 Sep;62(9):966-72.

PMID:
17895434
46.

Genetic structure and mating system of Manilkara huberi (Ducke) A. Chev., a heavily logged Amazonian timber species.

Azevedo VC, Kanashiro M, Ciampi AY, Grattapaglia D.

J Hered. 2007 Nov-Dec;98(7):646-54. Epub 2007 Sep 14.

PMID:
17873149
47.

An international parentage and identification panel for the domestic cat (Felis catus).

Lipinski MJ, Amigues Y, Blasi M, Broad TE, Cherbonnel C, Cho GJ, Corley S, Daftari P, Delattre DR, Dileanis S, Flynn JM, Grattapaglia D, Guthrie A, Harper C, Karttunen PL, Kimura H, Lewis GM, Longeri M, Meriaux JC, Morita M, Morrin-O'donnell RC, Niini T, Pedersen NC, Perrotta G, Polli M, Rittler S, Schubbert R, Strillacci MG, Van Haeringen H, Van Haeringen W, Lyons LA.

Anim Genet. 2007 Aug;38(4):371-7.

48.
49.

Haplotype diversity of 17 Y-chromosome STRs in Brazilians.

Pereira RW, Monteiro EH, Hirschfeld GC, Wang AY, Grattapaglia D.

Forensic Sci Int. 2007 Sep 13;171(2-3):226-36. Epub 2006 Jul 25. No abstract available.

PMID:
16870380
50.

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