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Items: 1 to 50 of 92

1.

First report on B chromosome content in a reptilian species: the case of Anolis carolinensis.

Kichigin IG, Lisachov AP, Giovannotti M, Makunin AI, Kabilov MR, O'Brien PCM, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2018 Aug 27. doi: 10.1007/s00438-018-1483-9. [Epub ahead of print]

PMID:
30146671
2.

Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1514. doi: 10.1038/s41559-018-0664-6.

PMID:
30104754
3.

Sequencing of Supernumerary Chromosomes of Red Fox and Raccoon Dog Confirms a Non-Random Gene Acquisition by B Chromosomes.

Makunin AI, Romanenko SA, Beklemisheva VR, Perelman PL, Druzhkova AS, Petrova KO, Prokopov DY, Chernyaeva EN, Johnson JL, Kukekova AV, Yang F, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Genes (Basel). 2018 Aug 10;9(8). pii: E405. doi: 10.3390/genes9080405.

4.

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.

Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G.

Nat Ecol Evol. 2018 Sep;2(9):1479-1491. doi: 10.1038/s41559-018-0611-6. Epub 2018 Aug 6. Erratum in: Nat Ecol Evol. 2018 Aug 13;:.

PMID:
30082739
5.

The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in Tragulus javanicus (Cetartiodactyla, Mammalia).

Proskuryakova AA, Kulemzina AI, Perelman PL, Serdukova NA, Ryder OA, Graphodatsky AS.

Genes (Basel). 2018 Jun 20;9(6). pii: E312. doi: 10.3390/genes9060312.

6.

Population genetic structure and phylogeography of sterlet (Acipenser ruthenus, Acipenseridae) in the Ob and Yenisei river basins.

Pobedintseva MA, Makunin AI, Kichigin IG, Kulemzina AI, Serdyukova NA, Romanenko SA, Vorobieva NV, Interesova EA, Korentovich MA, Zaytsev VF, Mischenko AV, Zadelenov VA, Yurchenko AA, Sherbakov DY, Graphodatsky AS, Trifonov VA.

Mitochondrial DNA A DNA Mapp Seq Anal. 2018 May 2:1-9. doi: 10.1080/24701394.2018.1467409. [Epub ahead of print]

PMID:
29716429
7.

Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes.

Makunin AI, Rajičić M, Karamysheva TV, Romanenko SA, Druzhkova AS, Blagojević J, Vujošević M, Rubtsov NB, Graphodatsky AS, Trifonov VA.

Chromosoma. 2018 Sep;127(3):301-311. doi: 10.1007/s00412-018-0662-0. Epub 2018 Jan 30.

PMID:
29380046
8.

De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus.

Moskalev AА, Kudryavtseva AV, Graphodatsky AS, Beklemisheva VR, Serdyukova NA, Krutovsky KV, Sharov VV, Kulakovskiy IV, Lando AS, Kasianov AS, Kuzmin DA, Putintseva YA, Feranchuk SI, Shaposhnikov MV, Fraifeld VE, Toren D, Snezhkina AV, Sitnik VV.

BMC Evol Biol. 2017 Dec 28;17(Suppl 2):258. doi: 10.1186/s12862-017-1103-z.

9.

Next Generation Sequencing of Chromosome-Specific Libraries Sheds Light on Genome Evolution in Paleotetraploid Sterlet (Acipenser ruthenus).

Andreyushkova DA, Makunin AI, Beklemisheva VR, Romanenko SA, Druzhkova AS, Biltueva LB, Serdyukova NA, Graphodatsky AS, Trifonov VA.

Genes (Basel). 2017 Nov 10;8(11). pii: E318. doi: 10.3390/genes8110318.

10.

Intrachromosomal Rearrangements in Rodents from the Perspective of Comparative Region-Specific Painting.

Romanenko SA, Serdyukova NA, Perelman PL, Pavlova SV, Bulatova NS, Golenishchev FN, Stanyon R, Graphodatsky AS.

Genes (Basel). 2017 Aug 30;8(9). pii: E215. doi: 10.3390/genes8090215.

11.

X Chromosome Evolution in Cetartiodactyla.

Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS.

Genes (Basel). 2017 Aug 31;8(9). pii: E216. doi: 10.3390/genes8090216.

12.

Genomic Organization and Physical Mapping of Tandemly Arranged Repetitive DNAs in Sterlet (Acipenser ruthenus).

Biltueva LS, Prokopov DY, Makunin AI, Komissarov AS, Kudryavtseva AV, Lemskaya NA, Vorobieva NV, Serdyukova NA, Romanenko SA, Gladkikh OL, Graphodatsky AS, Trifonov VA.

Cytogenet Genome Res. 2017;152(3):148-157. doi: 10.1159/000479472. Epub 2017 Aug 30.

PMID:
28850953
13.

Rapid Karyotype Evolution in Lasiopodomys Involved at Least Two Autosome - Sex Chromosome Translocations.

Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O'Brien PC, Kovalskaya JM, Smorkatcheva AV, Golenishchev FN, Perelman PL, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS.

PLoS One. 2016 Dec 9;11(12):e0167653. doi: 10.1371/journal.pone.0167653. eCollection 2016.

14.

Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing.

Makunin AI, Kichigin IG, Larkin DM, O'Brien PC, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O'Brien SJ, Graphodatsky AS, Trifonov VA.

BMC Genomics. 2016 Aug 11;17(1):618. doi: 10.1186/s12864-016-2933-6.

15.

Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA.

Kichigin IG, Giovannotti M, Makunin AI, Ng BL, Kabilov MR, Tupikin AE, Barucchi VC, Splendiani A, Ruggeri P, Rens W, O'Brien PC, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2016 Oct;291(5):1955-66. doi: 10.1007/s00438-016-1230-z. Epub 2016 Jul 18.

PMID:
27431992
16.

Evolutionary plasticity of acipenseriform genomes.

Trifonov VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Stanyon R, Graphodatsky AS.

Chromosoma. 2016 Sep;125(4):661-8. doi: 10.1007/s00412-016-0609-2. Epub 2016 Jul 14. Review.

PMID:
27411693
17.

Comparative Chromosome Map and Heterochromatin Features of the Gray Whale Karyotype (Cetacea).

Kulemzina AI, Proskuryakova AA, Beklemisheva VR, Lemskaya NA, Perelman PL, Graphodatsky AS.

Cytogenet Genome Res. 2016;148(1):25-34. doi: 10.1159/000445459. Epub 2016 Apr 19.

PMID:
27088853
18.

The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).

Beklemisheva VR, Perelman PL, Lemskaya NA, Kulemzina AI, Proskuryakova AA, Burkanov VN, Graphodatsky AS.

PLoS One. 2016 Jan 28;11(1):e0147647. doi: 10.1371/journal.pone.0147647. eCollection 2016.

19.

GENOTYPING AND COAT COLOUR DETECTION OF ANCIENT HORSES FROM BURYATIA.

Kusliy MA, Druzhkova AS, Popova KO, Vorobieva NV, Makunin AI, Yurlova AA, Tishkin AA, Minyaev SS, Trifonov, Graphodatsky AS, Dymova MA, Filipenko ML.

Tsitologiia. 2016;58(4):304-8. English, Romanian.

PMID:
30191698
20.

Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus.

Romanenko SA, Lemskaya NA, Trifonov VA, Serdyukova NA, O'Brien PC, Bulatova NSh, Golenishchev FN, Ferguson-Smith MA, Yang F, Graphodatsky AS.

Chromosome Res. 2016 May;24(2):145-59. doi: 10.1007/s10577-015-9504-6. Epub 2015 Nov 26.

PMID:
26611440
21.

Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting.

Romanenko SA, Biltueva LS, Serdyukova NA, Kulemzina AI, Beklemisheva VR, Gladkikh OL, Lemskaya NA, Interesova EA, Korentovich MA, Vorobieva NV, Graphodatsky AS, Trifonov VA.

Mol Cytogenet. 2015 Nov 19;8:90. doi: 10.1186/s13039-015-0194-8. eCollection 2015.

22.

Chromosome Polymorphism in Microtus (Alexandromys) mujanensis (Arvicolinae, Rodentia).

Lemskaya NA, Kartavtseva IV, Rubtsova NV, Golenishchev FN, Sheremetyeva IN, Graphodatsky AS.

Cytogenet Genome Res. 2015;146(3):238-42. doi: 10.1159/000439096. Epub 2015 Aug 29.

PMID:
26314555
23.

[Ancient DNA: Results and Prospects (the 30th Anniversary)].

Druzhkova AS, Vorobieva NV, Trifonov VA, Graphodatsky AS.

Genetika. 2015 Jun;51(6):627-43. Review. Russian.

PMID:
26310027
24.

A First Generation Comparative Chromosome Map between Guinea Pig (Cavia porcellus) and Humans.

Romanenko SA, Perelman PL, Trifonov VA, Serdyukova NA, Li T, Fu B, O'Brien PC, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F.

PLoS One. 2015 May 26;10(5):e0127937. doi: 10.1371/journal.pone.0127937. eCollection 2015.

25.

Genes on B chromosomes of vertebrates.

Makunin AI, Dementyeva PV, Graphodatsky AS, Volobouev VT, Kukekova AV, Trifonov VA.

Mol Cytogenet. 2014 Dec 17;7(1):99. doi: 10.1186/s13039-014-0099-y. eCollection 2014.

26.

Comparative chromosome painting of pronghorn (Antilocapra americana) and saola (Pseudoryx nghetinhensis) karyotypes with human and dromedary camel probes.

Kulemzina AI, Perelman PL, Grafodatskaya DA, Nguyen TT, Thompson M, Roelke-Parker ME, Graphodatsky AS.

BMC Genet. 2014 Jun 12;15:68. doi: 10.1186/1471-2156-15-68.

27.

A new form of the mole vole Ellobius tancrei Blasius, 1884 (Mammalia, Rodentia) with the lowest chromosome number.

Bakloushinskaya I, Romanenko SA, Serdukova NA, Graphodatsky AS, Lyapunova EA.

Comp Cytogenet. 2013 Jun 11;7(2):163-9. doi: 10.3897/CompCytogen.v7i2.5350. eCollection 2013.

28.

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs.

Thalmann O, Shapiro B, Cui P, Schuenemann VJ, Sawyer SK, Greenfield DL, Germonpré MB, Sablin MV, López-Giráldez F, Domingo-Roura X, Napierala H, Uerpmann HP, Loponte DM, Acosta AA, Giemsch L, Schmitz RW, Worthington B, Buikstra JE, Druzhkova A, Graphodatsky AS, Ovodov ND, Wahlberg N, Freedman AH, Schweizer RM, Koepfli KP, Leonard JA, Meyer M, Krause J, Pääbo S, Green RE, Wayne RK.

Science. 2013 Nov 15;342(6160):871-4. doi: 10.1126/science.1243650.

29.

Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus).

Trifonov VA, Dementyeva PV, Larkin DM, O'Brien PC, Perelman PL, Yang F, Ferguson-Smith MA, Graphodatsky AS.

BMC Biol. 2013 Aug 6;11:90. doi: 10.1186/1741-7007-11-90.

30.

Molecular cytogenetic insights to the phylogenetic affinities of the giraffe (Giraffa camelopardalis) and pronghorn (Antilocapra americana).

Cernohorska H, Kubickova S, Kopecna O, Kulemzina AI, Perelman PL, Elder FF, Robinson TJ, Graphodatsky AS, Rubes J.

Chromosome Res. 2013 Aug;21(5):447-60. doi: 10.1007/s10577-013-9361-0. Epub 2013 Jul 30.

PMID:
23896647
31.

Ancient DNA analysis affirms the canid from Altai as a primitive dog.

Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, Wayne RK.

PLoS One. 2013;8(3):e57754. doi: 10.1371/journal.pone.0057754. Epub 2013 Mar 6.

32.

Comparative cytogenetics of hamsters of the genus Allocricetulus argyropulo 1932 (Cricetidae, Rodentia).

Romanenko SA, Lebedev VS, Serdukova NA, Feoktistova NY, Surov AV, Graphodatsky AS.

Cytogenet Genome Res. 2013;139(4):258-66. doi: 10.1159/000346194. Epub 2013 Jan 17.

PMID:
23328385
33.

Comparative chromosome painting in Carnivora and Pholidota.

Perelman PL, Beklemisheva VR, Yudkin DV, Petrina TN, Rozhnov VV, Nie W, Graphodatsky AS.

Cytogenet Genome Res. 2012;137(2-4):174-93. doi: 10.1159/000341389. Epub 2012 Aug 7. Review.

34.

A comparative analysis of the mole vole sibling species Ellobius tancrei and E. talpinus (Cricetidae, Rodentia) through chromosome painting and examination of synaptonemal complex structures in hybrids.

Bakloushinskaya IY, Matveevsky SN, Romanenko SA, Serdukova NA, Kolomiets OL, Spangenberg VE, Lyapunova EA, Graphodatsky AS.

Cytogenet Genome Res. 2012;136(3):199-207. doi: 10.1159/000336459. Epub 2012 Feb 16.

PMID:
22343488
35.

Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting.

Nie W, Wang J, Su W, Wang D, Tanomtong A, Perelman PL, Graphodatsky AS, Yang F.

Heredity (Edinb). 2012 Jan;108(1):17-27. doi: 10.1038/hdy.2011.107. Epub 2011 Nov 16.

36.

Chromosomal evolution in Rodentia.

Romanenko SA, Perelman PL, Trifonov VA, Graphodatsky AS.

Heredity (Edinb). 2012 Jan;108(1):4-16. doi: 10.1038/hdy.2011.110. Epub 2011 Nov 16. Review.

37.

The genome diversity and karyotype evolution of mammals.

Graphodatsky AS, Trifonov VA, Stanyon R.

Mol Cytogenet. 2011 Oct 12;4:22. doi: 10.1186/1755-8166-4-22.

38.

Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes.

Becker SE, Thomas R, Trifonov VA, Wayne RK, Graphodatsky AS, Breen M.

Chromosome Res. 2011 Aug;19(6):685-708. doi: 10.1007/s10577-011-9233-4. Epub 2011 Sep 27.

PMID:
21947954
39.

Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations.

Vorobieva NV, Sherbakov DY, Druzhkova AS, Stanyon R, Tsybankov AA, Vasil'ev SK, Shunkov MV, Trifonov VA, Graphodatsky AS.

PLoS One. 2011;6(8):e24045. doi: 10.1371/journal.pone.0024045. Epub 2011 Aug 29.

40.

Comparative chromosome painting of four Siberian Vespertilionidae species with Aselliscus stoliczkanus and human probes.

Kulemzina AI, Nie W, Trifonov VA, Staroselec Y, Vasenkov DA, Volleth M, Yang F, Graphodatsky AS.

Cytogenet Genome Res. 2011;134(3):200-5. doi: 10.1159/000328834. Epub 2011 Jun 29.

PMID:
21709413
41.

Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting.

Beklemisheva VR, Romanenko SA, Biltueva LS, Trifonov VA, Vorobieva NV, Serdukova NA, Rubtsova NV, Brandler OV, O'Brien PC, Yang F, Stanyon R, Ferguson-Smith MA, Graphodatsky AS.

Chromosome Res. 2011 May;19(4):549-65. doi: 10.1007/s10577-011-9210-y. Epub 2011 May 11.

PMID:
21559983
42.

Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype.

Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS.

Chromosome Res. 2011 May;19(4):531-9. doi: 10.1007/s10577-011-9201-z. Epub 2011 Mar 29.

PMID:
21445689
43.

Genome-wide comparative chromosome map between human and the Forrest's pika (Ochotona forresti) established by cross-species chromosome painting: further support for the Glires hypothesis.

Ye J, Nie W, Wang J, Su W, Jing M, Graphodatsky AS, Yang F.

Cytogenet Genome Res. 2011;132(1-2):41-6. doi: 10.1159/000317082. Epub 2010 Jul 24.

44.

Reconstruction of the putative cervidae ancestral karyotype by chromosome painting of Siberian roe deer (Capreolus pygargus) with dromedary probes.

Dementyeva PV, Trifonov VA, Kulemzina AI, Graphodatsky AS.

Cytogenet Genome Res. 2010 Jun;128(4):228-35. doi: 10.1159/000298878. Epub 2010 Apr 23.

PMID:
20413959
45.

Chromosomal evolution of Arvicolinae (Cricetidae, Rodentia). III. Karyotype relationships of ten Microtus species.

Lemskaya NA, Romanenko SA, Golenishchev FN, Rubtsova NV, Sablina OV, Serdukova NA, O'Brien PC, Fu B, Yiğit N, Ferguson-Smith MA, Yang F, Graphodatsky AS.

Chromosome Res. 2010 Jun;18(4):459-71. doi: 10.1007/s10577-010-9124-0. Epub 2010 Apr 9.

PMID:
20379801
46.

New insights into the karyotypic evolution in muroid rodents revealed by multicolor banding applying murine probes.

Trifonov VA, Kosyakova N, Romanenko SA, Stanyon R, Graphodatsky AS, Liehr T.

Chromosome Res. 2010 Feb;18(2):265-75. doi: 10.1007/s10577-010-9110-6. Epub 2010 Feb 2.

PMID:
20127166
47.

Chromosomal mapping of canine-derived BAC clones to the red fox and American mink genomes.

Kukekova AV, Vorobieva NV, Beklemisheva VR, Johnson JL, Temnykh SV, Yudkin DV, Trut LN, Andre C, Galibert F, Aguirre GD, Acland GM, Graphodatsky AS.

J Hered. 2009 Jul-Aug;100 Suppl 1:S42-53. doi: 10.1093/jhered/esp037. Epub 2009 Jun 21.

48.

Cross-species chromosome painting in Cetartiodactyla: reconstructing the karyotype evolution in key phylogenetic lineages.

Kulemzina AI, Trifonov VA, Perelman PL, Rubtsova NV, Volobuev V, Ferguson-Smith MA, Stanyon R, Yang F, Graphodatsky AS.

Chromosome Res. 2009;17(3):419-36. doi: 10.1007/s10577-009-9032-3. Epub 2009 Apr 7.

PMID:
19350402
49.

Karyotype evolution of giraffes (Giraffa camelopardalis) revealed by cross-species chromosome painting with Chinese muntjac (Muntiacus reevesi) and human (Homo sapiens) paints.

Huang L, Nesterenko A, Nie W, Wang J, Su W, Graphodatsky AS, Yang F.

Cytogenet Genome Res. 2008;122(2):132-8. doi: 10.1159/000163090. Epub 2008 Dec 18.

PMID:
19096208
50.

Chromosome painting shows that skunks (Mephitidae, Carnivora) have highly rearranged karyotypes.

Perelman PL, Graphodatsky AS, Dragoo JW, Serdyukova NA, Stone G, Cavagna P, Menotti A, Nie W, O'Brien PC, Wang J, Burkett S, Yuki K, Roelke ME, O'Brien SJ, Yang F, Stanyon R.

Chromosome Res. 2008;16(8):1215-31. doi: 10.1007/s10577-008-1270-2. Epub 2008 Nov 25.

PMID:
19051045

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