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Items: 1 to 50 of 73

1.

Biopsy versus resection for high-grade glioma.

Hart MG, Grant GR, Solyom EF, Grant R.

Cochrane Database Syst Rev. 2019 Jun 6;6:CD002034. doi: 10.1002/14651858.CD002034.pub2. Review.

PMID:
31169915
2.

A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes.

Sun Y, Kim EJ, Felt SA, Taylor LJ, Agarwal D, Grant GR, López CB.

PLoS Pathog. 2019 Apr 17;15(4):e1007707. doi: 10.1371/journal.ppat.1007707. eCollection 2019 Apr.

3.

Variability in the Analgesic Response to Ibuprofen Is Associated With Cyclooxygenase Activation in Inflammatory Pain.

Theken KN, Hersh EV, Lahens NF, Lee HM, Li X, Granquist EJ, Giannakopoulos HE, Levin LM, Secreto SA, Grant GR, Detre JA, FitzGerald GA, Grosser T, Farrar JT.

Clin Pharmacol Ther. 2019 Sep;106(3):632-641. doi: 10.1002/cpt.1446. Epub 2019 Apr 29.

PMID:
30929268
4.

Distinct vascular genomic response of proton and gamma radiation-A pilot investigation.

Ricciotti E, Sarantopoulou D, Grant GR, Sanzari JK, Krigsfeld GS, Kiliti AJ, Kennedy AR, Grosser T.

PLoS One. 2019 Feb 11;14(2):e0207503. doi: 10.1371/journal.pone.0207503. eCollection 2019.

5.

Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila.

Shakhmantsir I, Nayak S, Grant GR, Sehgal A.

Elife. 2018 Dec 5;7. pii: e39821. doi: 10.7554/eLife.39821.

6.

Lipocalin-Like Prostaglandin D Synthase but Not Hemopoietic Prostaglandin D Synthase Deletion Causes Hypertension and Accelerates Thrombogenesis in Mice.

Song WL, Ricciotti E, Liang X, Grosser T, Grant GR, FitzGerald GA.

J Pharmacol Exp Ther. 2018 Dec;367(3):425-432. doi: 10.1124/jpet.118.250936. Epub 2018 Oct 10.

7.

SAP97 regulates behavior and expression of schizophrenia risk enriched gene sets in mouse hippocampus.

Gupta P, Uner OE, Nayak S, Grant GR, Kalb RG.

PLoS One. 2018 Jul 11;13(7):e0200477. doi: 10.1371/journal.pone.0200477. eCollection 2018.

8.

Transgenerational inheritance of chronic adolescent stress: Effects of stress response and the amygdala transcriptome.

Manners MT, Yohn NL, Lahens NF, Grant GR, Bartolomei MS, Blendy JA.

Genes Brain Behav. 2018 Jun 13:e12493. doi: 10.1111/gbb.12493. [Epub ahead of print]

PMID:
29896789
9.

Overlap in signaling between Smoothened and the α subunit of the heterotrimeric G protein G13.

Guo X, Riobo-Del Galdo NA, Kim EJ, Grant GR, Manning DR.

PLoS One. 2018 May 15;13(5):e0197442. doi: 10.1371/journal.pone.0197442. eCollection 2018.

10.

Complete Transcriptome Profiling of Normal and Age-Related Macular Degeneration Eye Tissues Reveals Dysregulation of Anti-Sense Transcription.

Kim EJ, Grant GR, Bowman AS, Haider N, Gudiseva HV, Chavali VRM.

Sci Rep. 2018 Feb 14;8(1):3040. doi: 10.1038/s41598-018-21104-7.

11.

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.

Norton SS, Vaquero-Garcia J, Lahens NF, Grant GR, Barash Y.

Bioinformatics. 2018 May 1;34(9):1488-1497. doi: 10.1093/bioinformatics/btx790.

12.

A Pilot Characterization of the Human Chronobiome.

Skarke C, Lahens NF, Rhoades SD, Campbell A, Bittinger K, Bailey A, Hoffmann C, Olson RS, Chen L, Yang G, Price TS, Moore JH, Bushman FD, Greene CS, Grant GR, Weljie AM, FitzGerald GA.

Sci Rep. 2017 Dec 7;7(1):17141. doi: 10.1038/s41598-017-17362-6.

13.

Mitotic transcription and waves of gene reactivation during mitotic exit.

Palozola KC, Donahue G, Liu H, Grant GR, Becker JS, Cote A, Yu H, Raj A, Zaret KS.

Science. 2017 Oct 6;358(6359):119-122. doi: 10.1126/science.aal4671. Epub 2017 Sep 14.

14.

Sleep restriction induced energy, methylation and lipogenesis metabolic switches in rat liver.

Sengupta A, Rhoades SD, Kim EJ, Nayak S, Grant GR, Meerlo P, Weljie AM.

Int J Biochem Cell Biol. 2017 Dec;93:129-135. doi: 10.1016/j.biocel.2017.08.014. Epub 2017 Aug 30.

PMID:
28860003
15.

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression.

Lahens NF, Ricciotti E, Smirnova O, Toorens E, Kim EJ, Baruzzo G, Hayer KE, Ganguly T, Schug J, Grant GR.

BMC Genomics. 2017 Aug 10;18(1):602. doi: 10.1186/s12864-017-4011-0.

16.

Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain.

Hu Q, Kim EJ, Feng J, Grant GR, Heller EA.

PLoS Comput Biol. 2017 Jun 13;13(6):e1005602. doi: 10.1371/journal.pcbi.1005602. eCollection 2017 Jun.

17.

Characterizing the "POAGome": A bioinformatics-driven approach to primary open-angle glaucoma.

Danford ID, Verkuil LD, Choi DJ, Collins DW, Gudiseva HV, Uyhazi KE, Lau MK, Kanu LN, Grant GR, Chavali VRM, O'Brien JM.

Prog Retin Eye Res. 2017 May;58:89-114. doi: 10.1016/j.preteyeres.2017.02.001. Epub 2017 Feb 20. Review.

18.

Simulation-based comprehensive benchmarking of RNA-seq aligners.

Baruzzo G, Hayer KE, Kim EJ, Di Camillo B, FitzGerald GA, Grant GR.

Nat Methods. 2017 Feb;14(2):135-139. doi: 10.1038/nmeth.4106. Epub 2016 Dec 12.

19.

Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing.

Benakanakere MR, Finoti LS, Tanaka U, Grant GR, Scarel-Caminaga RM, Kinane DF.

Sci Rep. 2016 Aug 8;6:31180. doi: 10.1038/srep31180.

20.

Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.

Yang G, Chen L, Grant GR, Paschos G, Song WL, Musiek ES, Lee V, McLoughlin SC, Grosser T, Cotsarelis G, FitzGerald GA.

Sci Transl Med. 2016 Feb 3;8(324):324ra16. doi: 10.1126/scitranslmed.aad3305. Epub 2016 Feb 3.

21.

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.

Hayer KE, Pizarro A, Lahens NF, Hogenesch JB, Grant GR.

Bioinformatics. 2015 Dec 15;31(24):3938-45. doi: 10.1093/bioinformatics/btv488. Epub 2015 Sep 3.

22.

Considerations for RNA-seq analysis of circadian rhythms.

Li J, Grant GR, Hogenesch JB, Hughes ME.

Methods Enzymol. 2015;551:349-67. doi: 10.1016/bs.mie.2014.10.020. Epub 2014 Dec 26.

PMID:
25662464
23.

Erythropoietin upregulation in pulmonary arterial hypertension.

Karamanian VA, Harhay M, Grant GR, Palevsky HI, Grizzle WE, Zamanian RT, Ihida-Stansbury K, Taichman DB, Kawut SM, Jones PL.

Pulm Circ. 2014 Jun;4(2):269-79. doi: 10.1086/675990.

24.

IVT-seq reveals extreme bias in RNA sequencing.

Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB.

Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86.

25.

Myeloid cell microsomal prostaglandin E synthase-1 fosters atherogenesis in mice.

Chen L, Yang G, Monslow J, Todd L, Cormode DP, Tang J, Grant GR, DeLong JH, Tang SY, Lawson JA, Pure E, Fitzgerald GA.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6828-33. doi: 10.1073/pnas.1401797111. Epub 2014 Apr 21.

26.

Myeloid Cell COX-2 deletion reduces mammary tumor growth through enhanced cytotoxic T-lymphocyte function.

Chen EP, Markosyan N, Connolly E, Lawson JA, Li X, Grant GR, Grosser T, FitzGerald GA, Smyth EM.

Carcinogenesis. 2014 Aug;35(8):1788-97. doi: 10.1093/carcin/bgu053. Epub 2014 Mar 3.

27.

Systematic evaluation of spliced alignment programs for RNA-seq data.

Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, Rätsch G, Goldman N, Hubbard TJ, Harrow J, Guigó R, Bertone P; RGASP Consortium.

Nat Methods. 2013 Dec;10(12):1185-91. doi: 10.1038/nmeth.2722. Epub 2013 Nov 3.

28.

Response to letters regarding article, "Drug resistance and pseudoresistance: an unintended consequence of enteric coating aspirin".

Grosser T, Fries S, Lawson JA, Kapoor SC, Grant GR, Fitzgerald GA.

Circulation. 2013 Sep 17;128(12):e191. doi: 10.1161/CIRCULATIONAHA.113.004750. No abstract available.

PMID:
24043153
29.

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes.

Farkas MH, Grant GR, White JA, Sousa ME, Consugar MB, Pierce EA.

BMC Genomics. 2013 Jul 18;14:486. doi: 10.1186/1471-2164-14-486.

30.

Drug resistance and pseudoresistance: an unintended consequence of enteric coating aspirin.

Grosser T, Fries S, Lawson JA, Kapoor SC, Grant GR, FitzGerald GA.

Circulation. 2013 Jan 22;127(3):377-85. doi: 10.1161/CIRCULATIONAHA.112.117283. Epub 2012 Dec 4.

31.

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain.

Hughes ME, Grant GR, Paquin C, Qian J, Nitabach MN.

Genome Res. 2012 Jul;22(7):1266-81. doi: 10.1101/gr.128876.111. Epub 2012 Apr 3.

32.

Transcriptome analyses to investigate the pathogenesis of RNA splicing factor retinitis pigmentosa.

Farkas MH, Grant GR, Pierce EA.

Adv Exp Med Biol. 2012;723:519-25. doi: 10.1007/978-1-4614-0631-0_65. Review. No abstract available.

33.

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Grant GR, Farkas MH, Pizarro AD, Lahens NF, Schug J, Brunk BP, Stoeckert CJ, Hogenesch JB, Pierce EA.

Bioinformatics. 2011 Sep 15;27(18):2518-28. doi: 10.1093/bioinformatics/btr427. Epub 2011 Jul 19.

34.

Side-specific expression of activated leukocyte adhesion molecule (ALCAM; CD166) in pathosusceptible regions of swine aortic valve endothelium.

Guerraty MA, Grant GR, Karanian JW, Chiesa OA, Pritchard WF, Davies PF.

J Heart Valve Dis. 2011 Mar;20(2):165-7.

35.

Discovery approaches to UPR in athero-susceptible endothelium in vivo.

Civelek M, Manduchi E, Grant GR, Stoeckert CJ Jr, Davies PF.

Methods Enzymol. 2011;489:109-26. doi: 10.1016/B978-0-12-385116-1.00007-8.

36.

Propagation of adipogenic signals through an epigenomic transition state.

Steger DJ, Grant GR, Schupp M, Tomaru T, Lefterova MI, Schug J, Manduchi E, Stoeckert CJ Jr, Lazar MA.

Genes Dev. 2010 May 15;24(10):1035-44. doi: 10.1101/gad.1907110.

37.

Cell-specific determinants of peroxisome proliferator-activated receptor gamma function in adipocytes and macrophages.

Lefterova MI, Steger DJ, Zhuo D, Qatanani M, Mullican SE, Tuteja G, Manduchi E, Grant GR, Lazar MA.

Mol Cell Biol. 2010 May;30(9):2078-89. doi: 10.1128/MCB.01651-09. Epub 2010 Feb 22.

38.

Hypercholesterolemia induces side-specific phenotypic changes and peroxisome proliferator-activated receptor-gamma pathway activation in swine aortic valve endothelium.

Guerraty MA, Grant GR, Karanian JW, Chiesa OA, Pritchard WF, Davies PF.

Arterioscler Thromb Vasc Biol. 2010 Feb;30(2):225-31. doi: 10.1161/ATVBAHA.109.198549. Epub 2009 Nov 19.

39.

Prelesional arterial endothelial phenotypes in hypercholesterolemia: universal ABCA1 upregulation contrasts with region-specific gene expression in vivo.

Civelek M, Grant GR, Irolla CR, Shi C, Riley RJ, Chiesa OA, Stoeckert CJ Jr, Karanian JW, Pritchard WF, Davies PF.

Am J Physiol Heart Circ Physiol. 2010 Jan;298(1):H163-70. doi: 10.1152/ajpheart.00652.2009. Epub 2009 Nov 6.

40.

A flexible two-stage procedure for identifying gene sets that are differentially expressed.

Heller R, Manduchi E, Grant GR, Ewens WJ.

Bioinformatics. 2009 Apr 15;25(8):1019-25. doi: 10.1093/bioinformatics/btp076. Epub 2009 Feb 11.

PMID:
19213738
41.

Integrating epidemiology, education, and organizing for environmental justice: community health effects of industrial hog operations.

Wing S, Horton RA, Muhammad N, Grant GR, Tajik M, Thu K.

Am J Public Health. 2008 Aug;98(8):1390-7. doi: 10.2105/AJPH.2007.110486. Epub 2008 Jun 12.

42.

Analysis and management of microarray gene expression data.

Grant GR, Manduchi E, Stoeckert CJ Jr.

Curr Protoc Mol Biol. 2007 Jan;Chapter 19:Unit 19.6. doi: 10.1002/0471142727.mb1906s77. Review.

PMID:
18265395
43.

Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays.

Guttman M, Mies C, Dudycz-Sulicz K, Diskin SJ, Baldwin DA, Stoeckert CJ Jr, Grant GR.

PLoS Genet. 2007 Aug;3(8):e143.

44.

Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes.

Sethupathy P, Borel C, Gagnebin M, Grant GR, Deutsch S, Elton TS, Hatzigeorgiou AG, Antonarakis SE.

Am J Hum Genet. 2007 Aug;81(2):405-13. Epub 2007 Jul 12.

45.
46.

STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments.

Diskin SJ, Eck T, Greshock J, Mosse YP, Naylor T, Stoeckert CJ Jr, Weber BL, Maris JM, Grant GR.

Genome Res. 2006 Sep;16(9):1149-58. Epub 2006 Aug 9.

47.

Multiple polymorphic loci determine basal hepatic and splenic iron status in mice.

Grant GR, Robinson SW, Edwards RE, Clothier B, Davies R, Judah DJ, Broman KW, Smith AG.

Hepatology. 2006 Jul;44(1):174-85.

PMID:
16799992
48.

Regional determinants of arterial endothelial phenotype dominate the impact of gender or short-term exposure to a high-fat diet.

Passerini AG, Shi C, Francesco NM, Chuan P, Manduchi E, Grant GR, Stoeckert CJ Jr, Karanian JW, Wray-Cahen D, Pritchard WF, Davies PF.

Biochem Biophys Res Commun. 2005 Jun 24;332(1):142-8.

PMID:
15896310
49.

A practical false discovery rate approach to identifying patterns of differential expression in microarray data.

Grant GR, Liu J, Stoeckert CJ Jr.

Bioinformatics. 2005 Jun 1;21(11):2684-90. Epub 2005 Mar 29.

PMID:
15797908
50.

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