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Items: 1 to 50 of 112

1.

Genebank genomics bridges the gap between the conservation of crop diversity and plant breeding.

Mascher M, Schreiber M, Scholz U, Graner A, Reif JC, Stein N.

Nat Genet. 2019 Jul;51(7):1076-1081. doi: 10.1038/s41588-019-0443-6. Epub 2019 Jun 28. Review.

PMID:
31253974
2.

Dissecting the genome wide genetic variants of milling and appearance quality traits in rice.

Misra G, Anacleto R, Badoni S, Butardo V, Molina L, Graner A, Demont M, Morell MK, Sreenivasulu N.

J Exp Bot. 2019 May 30. pii: erz256. doi: 10.1093/jxb/erz256. [Epub ahead of print]

PMID:
31145789
3.

Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage.

Abdel-Ghani AH, Sharma R, Wabila C, Dhanagond S, Owais SJ, Duwayri MA, Al-Dalain SA, Klukas C, Chen D, Lübberstedt T, von Wirén N, Graner A, Kilian B, Neumann K.

BMC Plant Biol. 2019 May 23;19(1):216. doi: 10.1186/s12870-019-1828-5.

4.

Genetic Dissection of Root System Architectural Traits in Spring Barley.

Jia Z, Liu Y, Gruber BD, Neumann K, Kilian B, Graner A, von Wirén N.

Front Plant Sci. 2019 Apr 2;10:400. doi: 10.3389/fpls.2019.00400. eCollection 2019.

5.

A tiered approach to genome-wide association analysis for the adherence of hulls to the caryopsis of barley seeds reveals footprints of selection.

Wabila C, Neumann K, Kilian B, Radchuk V, Graner A.

BMC Plant Biol. 2019 Mar 6;19(1):95. doi: 10.1186/s12870-019-1694-1.

6.

Unbalanced historical phenotypic data from seed regeneration of a barley ex situ collection.

Gonzalez MY, Weise S, Zhao Y, Philipp N, Arend D, Börner A, Oppermann M, Graner A, Reif JC, Schulthess AW.

Sci Data. 2018 Dec 4;5:180278. doi: 10.1038/sdata.2018.278.

7.

Genebank genomics highlights the diversity of a global barley collection.

Milner SG, Jost M, Taketa S, Mazón ER, Himmelbach A, Oppermann M, Weise S, Knüpffer H, Basterrechea M, König P, Schüler D, Sharma R, Pasam RK, Rutten T, Guo G, Xu D, Zhang J, Herren G, Müller T, Krattinger SG, Keller B, Jiang Y, González MY, Zhao Y, Habekuß A, Färber S, Ordon F, Lange M, Börner A, Graner A, Reif JC, Scholz U, Mascher M, Stein N.

Nat Genet. 2019 Feb;51(2):319-326. doi: 10.1038/s41588-018-0266-x. Epub 2018 Nov 12.

PMID:
30420647
8.

Genetic basis of drought tolerance during seed germination in barley.

Thabet SG, Moursi YS, Karam MA, Graner A, Alqudah AM.

PLoS One. 2018 Nov 2;13(11):e0206682. doi: 10.1371/journal.pone.0206682. eCollection 2018.

9.

Transfer of stem rust resistance gene SrB from Thinopyrum ponticum into wheat and development of a closely linked PCR-based marker.

Mago R, Zhang P, Xia X, Zhang J, Hoxha S, Lagudah E, Graner A, Dundas I.

Theor Appl Genet. 2019 Feb;132(2):371-382. doi: 10.1007/s00122-018-3224-1. Epub 2018 Oct 30.

PMID:
30377705
10.

Unlocking historical phenotypic data from an ex situ collection to enhance the informed utilization of genetic resources of barley (Hordeum sp.).

González MY, Philipp N, Schulthess AW, Weise S, Zhao Y, Börner A, Oppermann M, Graner A, Reif JC.

Theor Appl Genet. 2018 Sep;131(9):2009-2019. doi: 10.1007/s00122-018-3129-z. Epub 2018 Jun 29.

PMID:
29959470
11.

Leveraging the Use of Historical Data Gathered During Seed Regeneration of an ex Situ Genebank Collection of Wheat.

Philipp N, Weise S, Oppermann M, Börner A, Graner A, Keilwagen J, Kilian B, Zhao Y, Reif JC, Schulthess AW.

Front Plant Sci. 2018 May 8;9:609. doi: 10.3389/fpls.2018.00609. eCollection 2018.

12.

Identification of QTL hot spots for malting quality in two elite breeding lines with distinct tolerance to abiotic stress.

Kochevenko A, Jiang Y, Seiler C, Surdonja K, Kollers S, Reif JC, Korzun V, Graner A.

BMC Plant Biol. 2018 Jun 4;18(1):106. doi: 10.1186/s12870-018-1323-4.

13.

Natural variation and genetic make-up of leaf blade area in spring barley.

Alqudah AM, Youssef HM, Graner A, Schnurbusch T.

Theor Appl Genet. 2018 Apr;131(4):873-886. doi: 10.1007/s00122-018-3053-2. Epub 2018 Jan 19.

14.

Predicting plant biomass accumulation from image-derived parameters.

Chen D, Shi R, Pape JM, Neumann K, Arend D, Graner A, Chen M, Klukas C.

Gigascience. 2018 Feb 1;7(2). doi: 10.1093/gigascience/giy001.

15.

Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice.

Misra G, Badoni S, Anacleto R, Graner A, Alexandrov N, Sreenivasulu N.

Sci Rep. 2017 Sep 29;7(1):12478. doi: 10.1038/s41598-017-12778-6.

16.

Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis.

Neumann K, Zhao Y, Chu J, Keilwagen J, Reif JC, Kilian B, Graner A.

BMC Plant Biol. 2017 Aug 10;17(1):137. doi: 10.1186/s12870-017-1085-4.

17.

Leaf primordium size specifies leaf width and vein number among row-type classes in barley.

Thirulogachandar V, Alqudah AM, Koppolu R, Rutten T, Graner A, Hensel G, Kumlehn J, Bräutigam A, Sreenivasulu N, Schnurbusch T, Kuhlmann M.

Plant J. 2017 Aug;91(4):601-612. doi: 10.1111/tpj.13590. Epub 2017 Jun 19.

18.

VRS2 regulates hormone-mediated inflorescence patterning in barley.

Youssef HM, Eggert K, Koppolu R, Alqudah AM, Poursarebani N, Fazeli A, Sakuma S, Tagiri A, Rutten T, Govind G, Lundqvist U, Graner A, Komatsuda T, Sreenivasulu N, Schnurbusch T.

Nat Genet. 2017 Jan;49(1):157-161. doi: 10.1038/ng.3717. Epub 2016 Nov 14.

PMID:
27841879
19.

Sequence diversification in recessive alleles of two host factor genes suggests adaptive selection for bymovirus resistance in cultivated barley from East Asia.

Yang P, Habekuß A, Hofinger BJ, Kanyuka K, Kilian B, Graner A, Ordon F, Stein N.

Theor Appl Genet. 2017 Feb;130(2):331-344. doi: 10.1007/s00122-016-2814-z. Epub 2016 Nov 9.

20.

HSP90 inhibitors in the context of heat shock and the unfolded protein response: effects on a primary canine pulmonary adenocarcinoma cell line.

Graner AN, Hellwinkel JE, Lencioni AM, Madsen HJ, Harland TA, Marchando P, Nguyen GJ, Wang M, Russell LM, Bemis LT, Anchordoquy TJ, Graner MW.

Int J Hyperthermia. 2017 May;33(3):303-317. doi: 10.1080/02656736.2016.1256503. Epub 2016 Dec 20.

21.

The Genetic Architecture of Barley Plant Stature.

Alqudah AM, Koppolu R, Wolde GM, Graner A, Schnurbusch T.

Front Genet. 2016 Jun 24;7:117. doi: 10.3389/fgene.2016.00117. eCollection 2016.

22.

Prediction of malting quality traits in barley based on genome-wide marker data to assess the potential of genomic selection.

Schmidt M, Kollers S, Maasberg-Prelle A, Großer J, Schinkel B, Tomerius A, Graner A, Korzun V.

Theor Appl Genet. 2016 Feb;129(2):203-13. doi: 10.1007/s00122-015-2639-1. Epub 2015 Dec 9. Review.

PMID:
26649866
23.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

24.

Chromosomal passports provide new insights into diffusion of emmer wheat.

Badaeva ED, Keilwagen J, Knüpffer H, Waßermann L, Dedkova OS, Mitrofanova OP, Kovaleva ON, Liapunova OA, Pukhalskiy VA, Özkan H, Graner A, Willcox G, Kilian B.

PLoS One. 2015 May 29;10(5):e0128556. doi: 10.1371/journal.pone.0128556. eCollection 2015.

25.

Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis.

Neumann K, Klukas C, Friedel S, Rischbeck P, Chen D, Entzian A, Stein N, Graner A, Kilian B.

Plant Cell Environ. 2015 Oct;38(10):1980-96. doi: 10.1111/pce.12516. Epub 2015 Apr 14.

26.

Genetic diversity and population structure in a legacy collection of spring barley landraces adapted to a wide range of climates.

Pasam RK, Sharma R, Walther A, Özkan H, Graner A, Kilian B.

PLoS One. 2014 Dec 26;9(12):e116164. doi: 10.1371/journal.pone.0116164. eCollection 2014.

27.

Genetic dissection of photoperiod response based on GWAS of pre-anthesis phase duration in spring barley.

Alqudah AM, Sharma R, Pasam RK, Graner A, Kilian B, Schnurbusch T.

PLoS One. 2014 Nov 24;9(11):e113120. doi: 10.1371/journal.pone.0113120. eCollection 2014. Erratum in: PLoS One. 2015;10(4):e0123748.

28.

Mapping-by-sequencing accelerates forward genetics in barley.

Mascher M, Jost M, Kuon JE, Himmelbach A, Aßfalg A, Beier S, Scholz U, Graner A, Stein N.

Genome Biol. 2014 Jun 10;15(6):R78. doi: 10.1186/gb-2014-15-6-r78.

29.

Separating the wheat from the chaff - a strategy to utilize plant genetic resources from ex situ genebanks.

Keilwagen J, Kilian B, Özkan H, Babben S, Perovic D, Mayer KF, Walther A, Poskar CH, Ordon F, Eversole K, Börner A, Ganal M, Knüpffer H, Graner A, Friedel S.

Sci Rep. 2014 Jun 10;4:5231. doi: 10.1038/srep05231.

30.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

31.

Conserved synteny-based anchoring of the barley genome physical map.

Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis MM, Graner A, Schweizer P, Scholz U, Mayer K, Stein N.

Funct Integr Genomics. 2013 Aug;13(3):339-50. doi: 10.1007/s10142-013-0327-2. Epub 2013 Jun 28.

PMID:
23812960
32.

Association mapping of salt tolerance in barley (Hordeum vulgare L.).

Long NV, Dolstra O, Malosetti M, Kilian B, Graner A, Visser RG, van der Linden CG.

Theor Appl Genet. 2013 Sep;126(9):2335-51. doi: 10.1007/s00122-013-2139-0. Epub 2013 Jun 16.

PMID:
23771136
33.

Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley.

Zakhrabekova S, Gough SP, Braumann I, Müller AH, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A, Waugh R, Graner A, Stein N, Steuernagel B, Lundqvist U, Hansson M.

Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4326-31. doi: 10.1073/pnas.1113009109. Epub 2012 Feb 27.

34.

Genome-wide association studies for agronomical traits in a world wide spring barley collection.

Pasam RK, Sharma R, Malosetti M, van Eeuwijk FA, Haseneyer G, Kilian B, Graner A.

BMC Plant Biol. 2012 Jan 27;12:16. doi: 10.1186/1471-2229-12-16.

35.

NGS technologies for analyzing germplasm diversity in genebanks.

Kilian B, Graner A.

Brief Funct Genomics. 2012 Jan;11(1):38-50. doi: 10.1093/bfgp/elr046. Epub 2012 Jan 17. Review.

36.

Islands and streams: clusters and gene flow in wild barley populations from the Levant.

Hübner S, Günther T, Flavell A, Fridman E, Graner A, Korol A, Schmid KJ.

Mol Ecol. 2012 Mar;21(5):1115-29. doi: 10.1111/j.1365-294X.2011.05434.x. Epub 2012 Jan 18.

PMID:
22256891
37.

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

Schulte D, Ariyadasa R, Shi B, Fleury D, Saski C, Atkins M, deJong P, Wu CC, Graner A, Langridge P, Stein N.

BMC Genomics. 2011 May 19;12:247. doi: 10.1186/1471-2164-12-247.

38.

Unlocking the barley genome by chromosomal and comparative genomics.

Mayer KF, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezel J, Waugh R, Stein N.

Plant Cell. 2011 Apr;23(4):1249-63. doi: 10.1105/tpc.110.082537. Epub 2011 Apr 5.

39.

QTL analysis of root-lesion nematode resistance in barley: 1. Pratylenchus neglectus.

Sharma S, Sharma S, Kopisch-Obuch FJ, Keil T, Laubach E, Stein N, Graner A, Jung C.

Theor Appl Genet. 2011 May;122(7):1321-30. doi: 10.1007/s00122-011-1533-8. Epub 2011 Feb 6.

PMID:
21298411
40.

[Axillary recurrences after sentinel lymph node biopsy in initial breast cancer].

Sampol C, Giménez M, Torrecabota J, Serra C, Canet R, Daumal J, Peña C, Gonzalez L, Hernandez E, Graner A, Pozo A, Vega F.

Rev Esp Med Nucl. 2010 Sep-Oct;29(5):241-5. doi: 10.1016/j.remn.2010.02.007. Epub 2010 May 13. Spanish.

41.

Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley.

Vu GT, Wicker T, Buchmann JP, Chandler PM, Matsumoto T, Graner A, Stein N.

Funct Integr Genomics. 2010 Nov;10(4):509-21. doi: 10.1007/s10142-010-0173-4. Epub 2010 May 13.

PMID:
20464438
42.

DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits.

Haseneyer G, Stracke S, Piepho HP, Sauer S, Geiger HH, Graner A.

BMC Plant Biol. 2010 Jan 8;10:5. doi: 10.1186/1471-2229-10-5.

43.

Development and implementation of high-throughput SNP genotyping in barley.

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R.

BMC Genomics. 2009 Dec 4;10:582. doi: 10.1186/1471-2164-10-582.

44.

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley.

Steuernagel B, Taudien S, Gundlach H, Seidel M, Ariyadasa R, Schulte D, Petzold A, Felder M, Graner A, Scholz U, Mayer KF, Platzer M, Stein N.

BMC Genomics. 2009 Nov 20;10:547. doi: 10.1186/1471-2164-10-547.

45.

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice.

Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N.

BMC Evol Biol. 2009 Aug 22;9:209. doi: 10.1186/1471-2148-9-209.

46.

Gene content and virtual gene order of barley chromosome 1H.

Mayer KF, Taudien S, Martis M, Simková H, Suchánková P, Gundlach H, Wicker T, Petzold A, Felder M, Steuernagel B, Scholz U, Graner A, Platzer M, Dolezel J, Stein N.

Plant Physiol. 2009 Oct;151(2):496-505. doi: 10.1104/pp.109.142612. Epub 2009 Aug 19.

47.

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage.

Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, von Korff M, Varshney RK, Graner A, Valkoun J.

J Exp Bot. 2009;60(12):3531-44. doi: 10.1093/jxb/erp194. Epub 2009 Jun 26.

48.

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley.

Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N.

Plant J. 2009 Sep;59(5):712-22. doi: 10.1111/j.1365-313X.2009.03911.x. Epub 2009 May 12.

49.

Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation.

Hübner S, Höffken M, Oren E, Haseneyer G, Stein N, Graner A, Schmid K, Fridman E.

Mol Ecol. 2009 Apr;18(7):1523-36. doi: 10.1111/j.1365-294X.2009.04106.x.

PMID:
19368652
50.

Molecular plant breeding: methodology and achievements.

Varshney RK, Hoisington DA, Nayak SN, Graner A.

Methods Mol Biol. 2009;513:283-304. doi: 10.1007/978-1-59745-427-8_15.

PMID:
19347654

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