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Items: 27

1.

A subcellular proteome atlas of the yeast Komagataella phaffii.

Valli M, Grillitsch K, Grünwald-Gruber C, Tatto NE, Hrobath B, Klug L, Ivashov V, Hauzmayer S, Koller M, Tir N, Leisch F, Gasser B, Graf AB, Altmann F, Daum G, Mattanovich D.

FEMS Yeast Res. 2020 Feb 1;20(1). pii: foaa001. doi: 10.1093/femsyr/foaa001.

2.

Assessment of urban microbiome assemblies with the help of targeted in silico gold standards.

Gerner SM, Rattei T, Graf AB.

Biol Direct. 2018 Oct 12;13(1):22. doi: 10.1186/s13062-018-0225-6.

3.

Biomarkers allow detection of nutrient limitations and respective supplementation for elimination in Pichia pastoris fed-batch cultures.

Burgard J, Valli M, Graf AB, Gasser B, Mattanovich D.

Microb Cell Fact. 2017 Jul 11;16(1):117. doi: 10.1186/s12934-017-0730-9.

4.

Implications of evolutionary engineering for growth and recombinant protein production in methanol-based growth media in the yeast Pichia pastoris.

Moser JW, Prielhofer R, Gerner SM, Graf AB, Wilson IB, Mattanovich D, Dragosits M.

Microb Cell Fact. 2017 Mar 17;16(1):49. doi: 10.1186/s12934-017-0661-5.

5.

Curation of the genome annotation of Pichia pastoris (Komagataella phaffii) CBS7435 from gene level to protein function.

Valli M, Tatto NE, Peymann A, Gruber C, Landes N, Ekker H, Thallinger GG, Mattanovich D, Gasser B, Graf AB.

FEMS Yeast Res. 2016 Sep;16(6). pii: fow051. doi: 10.1093/femsyr/fow051. Epub 2016 Jul 6.

PMID:
27388471
6.

Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth Rates.

Rebnegger C, Vos T, Graf AB, Valli M, Pronk JT, Daran-Lapujade P, Mattanovich D.

Appl Environ Microbiol. 2016 Jul 15;82(15):4570-4583. doi: 10.1128/AEM.00638-16. Print 2016 Aug 1.

7.

Complete genome sequence and transcriptome regulation of the pentose utilizing yeast Sugiyamaella lignohabitans.

Bellasio M, Peymann A, Steiger MG, Valli M, Sipiczki M, Sauer M, Graf AB, Marx H, Mattanovich D.

FEMS Yeast Res. 2016 Jun;16(4). pii: fow037. doi: 10.1093/femsyr/fow037. Epub 2016 Apr 17.

PMID:
27189363
8.

Systems-level organization of yeast methylotrophic lifestyle.

Rußmayer H, Buchetics M, Gruber C, Valli M, Grillitsch K, Modarres G, Guerrasio R, Klavins K, Neubauer S, Drexler H, Steiger M, Troyer C, Al Chalabi A, Krebiehl G, Sonntag D, Zellnig G, Daum G, Graf AB, Altmann F, Koellensperger G, Hann S, Sauer M, Mattanovich D, Gasser B.

BMC Biol. 2015 Sep 23;13:80. doi: 10.1186/s12915-015-0186-5.

9.

Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level.

Prielhofer R, Cartwright SP, Graf AB, Valli M, Bill RM, Mattanovich D, Gasser B.

BMC Genomics. 2015 Mar 11;16:167. doi: 10.1186/s12864-015-1393-8.

10.

Predicting oculomotor behaviour from correlated populations of posterior parietal neurons.

Graf AB, Andersen RA.

Nat Commun. 2015 Jan 23;6:6024. doi: 10.1038/ncomms7024.

11.

Brain-machine interface for eye movements.

Graf AB, Andersen RA.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17630-5. doi: 10.1073/pnas.1419977111. Epub 2014 Nov 24.

12.

Inhibition of mast cell-derived histamine secretion by cromolyn sodium treatment decreases biliary hyperplasia in cholestatic rodents.

Kennedy LL, Hargrove LA, Graf AB, Francis TC, Hodges KM, Nguyen QP, Ueno Y, Greene JF, Meng F, Huynh VD, Francis HL.

Lab Invest. 2014 Dec;94(12):1406-18. doi: 10.1038/labinvest.2014.129. Epub 2014 Nov 3.

13.

Overexpression of the transcription factor Yap1 modifies intracellular redox conditions and enhances recombinant protein secretion.

Delic M, Graf AB, Koellensperger G, Haberhauer-Troyer C, Hann S, Mattanovich D, Gasser B.

Microb Cell. 2014 Oct 31;1(11):376-386. doi: 10.15698/mic2014.11.173.

14.

From neuronal populations to behavior: a computational journey.

Graf AB.

Front Comput Neurosci. 2014 Aug 1;8:81. doi: 10.3389/fncom.2014.00081. eCollection 2014. No abstract available.

15.

Identification of microRNAs specific for high producer CHO cell lines using steady-state cultivation.

Maccani A, Hackl M, Leitner C, Steinfellner W, Graf AB, Tatto NE, Karbiener M, Scheideler M, Grillari J, Mattanovich D, Kunert R, Borth N, Grabherr R, Ernst W.

Appl Microbiol Biotechnol. 2014 Sep;98(17):7535-48. doi: 10.1007/s00253-014-5911-4. Epub 2014 Jul 23.

16.

Inferring eye position from populations of lateral intraparietal neurons.

Graf AB, Andersen RA.

Elife. 2014 May 20;3:e02813. doi: 10.7554/eLife.02813.

17.

In Pichia pastoris, growth rate regulates protein synthesis and secretion, mating and stress response.

Rebnegger C, Graf AB, Valli M, Steiger MG, Gasser B, Maurer M, Mattanovich D.

Biotechnol J. 2014 Apr;9(4):511-25. doi: 10.1002/biot.201300334. Epub 2014 Jan 14.

18.

Prediction of transcribed PIWI-interacting RNAs from CHO RNAseq data.

Gerstl MP, Hackl M, Graf AB, Borth N, Grillari J.

J Biotechnol. 2013 Jun 20;166(1-2):51-7. doi: 10.1016/j.jbiotec.2013.04.010. Epub 2013 Apr 29.

PMID:
23639388
19.

The secretory pathway: exploring yeast diversity.

Delic M, Valli M, Graf AB, Pfeffer M, Mattanovich D, Gasser B.

FEMS Microbiol Rev. 2013 Nov;37(6):872-914. doi: 10.1111/1574-6976.12020. Epub 2013 Apr 12.

20.

Genome sequence of the ruminal bacterium Megasphaera elsdenii.

Marx H, Graf AB, Tatto NE, Thallinger GG, Mattanovich D, Sauer M.

J Bacteriol. 2011 Oct;193(19):5578-9. doi: 10.1128/JB.05861-11.

21.

Modeling and measuring intracellular fluxes of secreted recombinant protein in Pichia pastoris with a novel 34S labeling procedure.

Pfeffer M, Maurer M, Köllensperger G, Hann S, Graf AB, Mattanovich D.

Microb Cell Fact. 2011 Jun 26;10:47. doi: 10.1186/1475-2859-10-47.

22.

The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis.

Baumann K, Dato L, Graf AB, Frascotti G, Dragosits M, Porro D, Mattanovich D, Ferrer P, Branduardi P.

BMC Genomics. 2011 May 9;12:218. doi: 10.1186/1471-2164-12-218.

23.

Decoding the activity of neuronal populations in macaque primary visual cortex.

Graf AB, Kohn A, Jazayeri M, Movshon JA.

Nat Neurosci. 2011 Feb;14(2):239-45. doi: 10.1038/nn.2733. Epub 2011 Jan 9.

24.

A multi-level study of recombinant Pichia pastoris in different oxygen conditions.

Baumann K, Carnicer M, Dragosits M, Graf AB, Stadlmann J, Jouhten P, Maaheimo H, Gasser B, Albiol J, Mattanovich D, Ferrer P.

BMC Syst Biol. 2010 Oct 22;4:141. doi: 10.1186/1752-0509-4-141.

25.

Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production.

Sohn SB, Graf AB, Kim TY, Gasser B, Maurer M, Ferrer P, Mattanovich D, Lee SY.

Biotechnol J. 2010 Jul;5(7):705-15. doi: 10.1002/biot.201000078.

PMID:
20503221
26.

Prototype classification: insights from machine learning.

Graf AB, Bousquet O, Rätsch G, Schölkopf B.

Neural Comput. 2009 Jan;21(1):272-300. doi: 10.1162/neco.2008.01-07-443.

PMID:
19431284
27.

Classification of faces in man and machine.

Graf AB, Wichmann FA, Bülthoff HH, Schölkopf B.

Neural Comput. 2006 Jan;18(1):143-65.

PMID:
16354384

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