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Items: 28

1.

Variable gene transcription underlies phenotypic convergence of hypoxia tolerance in sculpins.

Mandic M, Ramon ML, Gerstein AC, Gracey AY, Richards JG.

BMC Evol Biol. 2018 Nov 3;18(1):163. doi: 10.1186/s12862-018-1275-1.

2.

Transcriptional and metabolomic characterization of spontaneous metabolic cycles in Mytilus californianus under subtidal conditions.

Gracey AY, Connor K.

Mar Genomics. 2016 Dec;30:35-41. doi: 10.1016/j.margen.2016.07.004. Epub 2016 Aug 15.

PMID:
27538734
3.

Modulation of digestive physiology and biochemistry in Mytilus californianus in response to feeding level acclimation and microhabitat.

Connor KM, Sung A, Garcia NS, Gracey AY, German DP.

Biol Open. 2016 Sep 15;5(9):1200-10. doi: 10.1242/bio.019430.

4.

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds.

Hedgecock D, Shin G, Gracey AY, Den Berg DV, Samanta MP.

G3 (Bethesda). 2015 Aug 6;5(10):2007-19. doi: 10.1534/g3.115.019570.

5.

The environmentally tuned transcriptomes of Mytilus mussels.

Lockwood BL, Connor KM, Gracey AY.

J Exp Biol. 2015 Jun;218(Pt 12):1822-33. doi: 10.1242/jeb.118190. Review.

6.

Divergent transcriptional patterns are related to differences in hypoxia tolerance between the intertidal and the subtidal sculpins.

Mandic M, Ramon ML, Gracey AY, Richards JG.

Mol Ecol. 2014 Dec;23(24):6091-103. doi: 10.1111/mec.12991. Epub 2014 Nov 27.

PMID:
25370158
7.

The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution.

Sakamaki K, Shimizu K, Iwata H, Imai K, Satou Y, Funayama N, Nozaki M, Yajima M, Nishimura O, Higuchi M, Chiba K, Yoshimoto M, Kimura H, Gracey AY, Shimizu T, Tomii K, Gotoh O, Akasaka K, Sawasaki T, Miller DJ.

Mol Biol Evol. 2014 Dec;31(12):3282-301. doi: 10.1093/molbev/msu260. Epub 2014 Sep 8.

PMID:
25205508
8.

The candidate histocompatibility locus of a Basal chordate encodes two highly polymorphic proteins.

Nydam ML, Netuschil N, Sanders E, Langenbacher A, Lewis DD, Taketa DA, Marimuthu A, Gracey AY, De Tomaso AW.

PLoS One. 2013 Jun 24;8(6):e65980. doi: 10.1371/journal.pone.0065980. Print 2013.

9.

High-resolution analysis of metabolic cycles in the intertidal mussel Mytilus californianus.

Connor KM, Gracey AY.

Am J Physiol Regul Integr Comp Physiol. 2012 Jan 1;302(1):R103-11. doi: 10.1152/ajpregu.00453.2011. Epub 2011 Oct 19.

10.

Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus.

Connor KM, Gracey AY.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):16110-5. doi: 10.1073/pnas.1111076108. Epub 2011 Sep 12.

11.

Hypoxia-induced mobilization of stored triglycerides in the euryoxic goby Gillichthys mirabilis.

Gracey AY, Lee TH, Higashi RM, Fan T.

J Exp Biol. 2011 Sep 15;214(Pt 18):3005-12. doi: 10.1242/jeb.059907.

12.

Mass mortality in Pacific oysters is associated with a specific gene expression signature.

Chaney ML, Gracey AY.

Mol Ecol. 2011 Jul;20(14):2942-54. doi: 10.1111/j.1365-294X.2011.05152.x. Epub 2011 Jun 15.

PMID:
21672066
13.

ExprAlign--the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles.

Li W, Gracey AY, Mello LV, Brass A, Cossins AR.

BMC Genomics. 2009 Nov 26;10:560. doi: 10.1186/1471-2164-10-560.

14.

Elevated expression of protein biosynthesis genes in liver and muscle of hibernating black bears (Ursus americanus).

Fedorov VB, Goropashnaya AV, Tøien Ø, Stewart NC, Gracey AY, Chang C, Qin S, Pertea G, Quackenbush J, Showe LC, Showe MK, Boyer BB, Barnes BM.

Physiol Genomics. 2009 Apr 10;37(2):108-18. doi: 10.1152/physiolgenomics.90398.2008. Epub 2009 Feb 24.

15.

Rhythms of gene expression in a fluctuating intertidal environment.

Gracey AY, Chaney ML, Boomhower JP, Tyburczy WR, Connor K, Somero GN.

Curr Biol. 2008 Oct 14;18(19):1501-7. doi: 10.1016/j.cub.2008.08.049.

16.

Ancient and modern duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes.

Evans H, De Tomaso T, Quail M, Rogers J, Gracey AY, Cossins AR, Berenbrink M.

Physiol Genomics. 2008 Sep 17;35(1):18-29. doi: 10.1152/physiolgenomics.90266.2008. Epub 2008 Jul 1.

17.

Global cooling: cold acclimation and the expression of soluble proteins in carp skeletal muscle.

McLean L, Young IS, Doherty MK, Robertson DH, Cossins AR, Gracey AY, Beynon RJ, Whitfield PD.

Proteomics. 2007 Aug;7(15):2667-81.

PMID:
17623276
18.
19.

An explicit test of the phospholipid saturation hypothesis of acquired cold tolerance in Caenorhabditis elegans.

Murray P, Hayward SA, Govan GG, Gracey AY, Cossins AR.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5489-94. Epub 2007 Mar 16.

20.

Beyond the lipid hypothesis: mechanisms underlying phenotypic plasticity in inducible cold tolerance.

Hayward SA, Murray PA, Gracey AY, Cossins AR.

Adv Exp Med Biol. 2007;594:132-42. Review.

PMID:
17205681
21.
22.

Hypoxia-inducible myoglobin expression in nonmuscle tissues.

Fraser J, de Mello LV, Ward D, Rees HH, Williams DR, Fang Y, Brass A, Gracey AY, Cossins AR.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2977-81. Epub 2006 Feb 9. Erratum in: Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9374. Fang, Yongchang [corrected to Fang, Yongxiang].

23.

Seasonally hibernating phenotype assessed through transcript screening.

Williams DR, Epperson LE, Li W, Hughes MA, Taylor R, Rogers J, Martin SL, Cossins AR, Gracey AY.

Physiol Genomics. 2005 Dec 14;24(1):13-22. Epub 2005 Oct 25.

PMID:
16249311
24.

Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate.

Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR.

Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16970-5. Epub 2004 Nov 18.

25.

Application of microarray technology in environmental and comparative physiology.

Gracey AY, Cossins AR.

Annu Rev Physiol. 2003;65:231-59. Epub 2002 May 1. Review.

PMID:
12471169
26.

The role of desaturases in cold-induced lipid restructuring.

Cossins AR, Murray PA, Gracey AY, Logue J, Polley S, Caddick M, Brooks S, Postle T, Maclean N.

Biochem Soc Trans. 2002 Nov;30(Pt 6):1082-6. Review.

PMID:
12440978
27.

Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis.

Gracey AY, Troll JV, Somero GN.

Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1993-8.

28.

Cold-induced expression of delta 9-desaturase in carp by transcriptional and posttranslational mechanisms.

Tiku PE, Gracey AY, Macartney AI, Beynon RJ, Cossins AR.

Science. 1996 Feb 9;271(5250):815-8.

PMID:
8629000

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