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Items: 44

1.

Ethical considerations in global HIV phylogenetic research.

Coltart CEM, Hoppe A, Parker M, Dawson L, Amon JJ, Simwinga M, Geller G, Henderson G, Laeyendecker O, Tucker JD, Eba P, Novitsky V, Vandamme AM, Seeley J, Dallabetta G, Harling G, Grabowski MK, Godfrey-Faussett P, Fraser C, Cohen MS, Pillay D; Ethics in HIV Phylogenetics Working Group.

Lancet HIV. 2018 Aug 30. pii: S2352-3018(18)30134-6. doi: 10.1016/S2352-3018(18)30134-6. [Epub ahead of print] Review.

PMID:
30174214
2.

Evolution of HIV-1 within untreated individuals and at the population scale in Uganda.

Raghwani J, Redd AD, Longosz AF, Wu CH, Serwadda D, Martens C, Kagaayi J, Sewankambo N, Porcella SF, Grabowski MK, Quinn TC, Eller MA, Eller LA, Wabwire-Mangen F, Robb ML, Fraser C, Lythgoe KA.

PLoS Pathog. 2018 Jul 27;14(7):e1007167. doi: 10.1371/journal.ppat.1007167. eCollection 2018 Jul.

3.

HIV-1 diversity among young women in rural South Africa: HPTN 068.

Sivay MV, Hudelson SE, Wang J, Agyei Y, Hamilton EL, Selin A, Dennis A, Kahn K, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH, Grabowski MK.

PLoS One. 2018 Jul 5;13(7):e0198999. doi: 10.1371/journal.pone.0198999. eCollection 2018.

4.

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

Wymant C, Blanquart F, Golubchik T, Gall A, Bakker M, Bezemer D, Croucher NJ, Hall M, Hillebregt M, Ong SH, Ratmann O, Albert J, Bannert N, Fellay J, Fransen K, Gourlay A, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Berkhout B, Cornelissen M, Kellam P, Reiss P, Fraser C; BEEHIVE Collaboration.

Virus Evol. 2018 May 18;4(1):vey007. doi: 10.1093/ve/vey007. eCollection 2018 Jan.

5.

Increases in Human Papillomavirus Vaccination Among Adolescent and Young Adult Males in the United States, 2011-2016.

Patel EU, Grabowski MK, Eisenberg AL, Packman ZR, Gravitt PE, Tobian AAR.

J Infect Dis. 2018 Jun 5;218(1):109-113. doi: 10.1093/infdis/jiy165.

PMID:
29584878
6.

Migration and risk of HIV acquisition in Rakai, Uganda: a population-based cohort study.

Olawore O, Tobian AAR, Kagaayi J, Bazaale JM, Nantume B, Kigozi G, Nankinga J, Nalugoda F, Nakigozi G, Kigozi G, Gray RH, Wawer MJ, Ssekubugu R, Santelli JS, Reynolds SJ, Chang LW, Serwadda D, Grabowski MK.

Lancet HIV. 2018 Apr;5(4):e181-e189. doi: 10.1016/S2352-3018(18)30009-2. Epub 2018 Feb 25.

PMID:
29490875
7.

Genetic Cluster Analysis for HIV Prevention.

Grabowski MK, Herbeck JT, Poon AFY.

Curr HIV/AIDS Rep. 2018 Apr;15(2):182-189. doi: 10.1007/s11904-018-0384-1. Review.

8.

Open data sharing and the Global South-Who benefits?

Serwadda D, Ndebele P, Grabowski MK, Bajunirwe F, Wanyenze RK.

Science. 2018 Feb 9;359(6376):642-643. doi: 10.1126/science.aap8395. No abstract available.

PMID:
29439233
9.

HIV viral suppression and geospatial patterns of HIV antiretroviral therapy treatment facility use in Rakai, Uganda.

Billioux VG, Grabowski MK, Ssekasanvu J, Reynolds SJ, Berman A, Bazaale J, Patel EU, Bugos E, Ndyanabo A, Kisakye A, Kagaayi J, Gray RH, Nakigozi G, Ssekubugu R, Nalugoda F, Serwadda D, Wawer MJ, Chang LW.

AIDS. 2018 Mar 27;32(6):819-824. doi: 10.1097/QAD.0000000000001761.

PMID:
29369167
10.

The validity of self-reported antiretroviral use in persons living with HIV: a population-based study.

Grabowski MK, Reynolds SJ, Kagaayi J, Gray RH, Clarke W, Chang LW, Nakigozi G, Laeyndecker O, Redd AD, Billioux V, Ssekubugu R, Nalugoda F, Wawer MJ, Serwadda D, Quinn TC, Tobian AAR.

AIDS. 2018 Jan 28;32(3):363-369. doi: 10.1097/QAD.0000000000001706.

PMID:
29194115
11.

HIV Prevention Efforts and Incidence of HIV in Uganda.

Grabowski MK, Serwadda DM, Gray RH, Nakigozi G, Kigozi G, Kagaayi J, Ssekubugu R, Nalugoda F, Lessler J, Lutalo T, Galiwango RM, Makumbi F, Kong X, Kabatesi D, Alamo ST, Wiersma S, Sewankambo NK, Tobian AAR, Laeyendecker O, Quinn TC, Reynolds SJ, Wawer MJ, Chang LW; Rakai Health Sciences Program.

N Engl J Med. 2017 Nov 30;377(22):2154-2166. doi: 10.1056/NEJMoa1702150.

12.

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C; BEEHIVE collaboration.

PLoS Biol. 2017 Jul 13;15(7):e1002608. doi: 10.1371/journal.pbio.1002608. eCollection 2017 Jul.

13.

Evaluation of Life Cycle Assessment (LCA) for Roadway Drainage Systems.

Byrne DM, Grabowski MK, Benitez ACB, Schmidt AR, Guest JS.

Environ Sci Technol. 2017 Aug 15;51(16):9261-9270. doi: 10.1021/acs.est.7b01856. Epub 2017 Jul 25.

PMID:
28697308
14.

Human immunodeficiency virus care cascade among sub-populations in Rakai, Uganda: an observational study.

Billioux VG, Chang LW, Reynolds SJ, Nakigozi G, Ssekasanvu J, Grabowski MK, Ssekubugu R, Nalugoda F, Kigozi G, Kagaayi J, Serwadda D, Gray RH, Wawer MJ.

J Int AIDS Soc. 2017 Jun 5;20(1):21590. doi: 10.7448/IAS.20.1.21590.

15.

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Blanquart F, Wymant C, Cornelissen M, Gall A, Bakker M, Bezemer D, Hall M, Hillebregt M, Ong SH, Albert J, Bannert N, Fellay J, Fransen K, Gourlay AJ, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos R, Laeyendecker O, Liitsola K, Meyer L, Porter K, Ristola M, van Sighem A, Vanham G, Berkhout B, Kellam P, Reiss P, Fraser C; BEEHIVE collaboration.

PLoS Biol. 2017 Jun 12;15(6):e2001855. doi: 10.1371/journal.pbio.2001855. eCollection 2017 Jun. Erratum in: PLoS Biol. 2017 Jul 13;15(7):e1002608.

16.

Elevated cytomegalovirus IgG antibody levels are associated with HIV-1 disease progression and immune activation.

Patel EU, Gianella S, Newell K, Tobian AA, Kirkpatrick AR, Nalugoda F, Grabowski MK, Gray RH, Serwadda D, Quinn TC, Redd AD, Reynolds SJ.

AIDS. 2017 Mar 27;31(6):807-813. doi: 10.1097/QAD.0000000000001412.

17.

Trends and Determinants of Human Papillomavirus Concordance Among Human Immunodeficiency Virus-Positive and -Negative Heterosexual Couples in Rakai, Uganda.

Grabowski MK, Gravitt PE, Gray RH, Serwadda D, Redd AD, Kigozi G, Kong X, Nalugoda F, Wawer MJ, Quinn TC, Tobian AAR.

J Infect Dis. 2017 Mar 1;215(5):772-780. doi: 10.1093/infdis/jiw631.

18.

Penile Immune Activation and Risk of HIV Shedding: A Prospective Cohort Study.

Patel EU, Kirkpatrick AR, Grabowski MK, Kigozi G, Gray RH, Prodger JL, Redd AD, Nalugoda F, Serwadda D, Wawer MJ, Quinn TC, Tobian AA.

Clin Infect Dis. 2017 Mar 15;64(6):776-784. doi: 10.1093/cid/ciw847.

19.

Phylogenetic insights into age-disparate partnerships and HIV.

Grabowski MK, Lessler J.

Lancet HIV. 2017 Jan;4(1):e8-e9. doi: 10.1016/S2352-3018(16)30184-9. Epub 2016 Dec 1. No abstract available.

PMID:
27914876
20.

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

Rose R, Lamers SL, Dollar JJ, Grabowski MK, Hodcroft EB, Ragonnet-Cronin M, Wertheim JO, Redd AD, German D, Laeyendecker O.

AIDS Res Hum Retroviruses. 2017 Mar;33(3):211-218. doi: 10.1089/AID.2016.0205. Epub 2016 Dec 13.

21.

A transmission-virulence evolutionary trade-off explains attenuation of HIV-1 in Uganda.

Blanquart F, Grabowski MK, Herbeck J, Nalugoda F, Serwadda D, Eller MA, Robb ML, Gray R, Kigozi G, Laeyendecker O, Lythgoe KA, Nakigozi G, Quinn TC, Reynolds SJ, Wawer MJ, Fraser C.

Elife. 2016 Nov 5;5. pii: e20492. doi: 10.7554/eLife.20492.

22.

Enhanced use of phylogenetic data to inform public health approaches to HIV among men who have sex with men.

German D, Grabowski MK, Beyrer C.

Sex Health. 2017 Feb;14(1):89-96. doi: 10.1071/SH16056.

23.

Heterogeneity of the HIV epidemic in agrarian, trading, and fishing communities in Rakai, Uganda: an observational epidemiological study.

Chang LW, Grabowski MK, Ssekubugu R, Nalugoda F, Kigozi G, Nantume B, Lessler J, Moore SM, Quinn TC, Reynolds SJ, Gray RH, Serwadda D, Wawer MJ.

Lancet HIV. 2016 Aug;3(8):e388-e396. doi: 10.1016/S2352-3018(16)30034-0. Epub 2016 Jul 9.

24.

HIV-1 Sequence Data Coverage in Central East Africa from 1959 to 2013.

Lamers SL, Barbier AE, Ratmann O, Fraser C, Rose R, Laeyendecker O, Grabowski MK.

AIDS Res Hum Retroviruses. 2016 Sep;32(9):904-8. doi: 10.1089/AID.2016.0079. Epub 2016 Aug 2.

25.

Measuring Spatial Dependence for Infectious Disease Epidemiology.

Lessler J, Salje H, Grabowski MK, Cummings DA.

PLoS One. 2016 May 19;11(5):e0155249. doi: 10.1371/journal.pone.0155249. eCollection 2016.

26.

Partner Human Papillomavirus Viral Load and Incident Human Papillomavirus Detection in Heterosexual Couples.

Grabowski MK, Kong X, Gray RH, Serwadda D, Kigozi G, Gravitt PE, Nalugoda F, Reynolds SJ, Wawer MJ, Redd AD, Watya S, Quinn TC, Tobian AA.

J Infect Dis. 2016 Mar 15;213(6):948-56. doi: 10.1093/infdis/jiv541. Epub 2015 Nov 23.

27.

Use of injectable hormonal contraception and women's risk of herpes simplex virus type 2 acquisition: a prospective study of couples in Rakai, Uganda.

Grabowski MK, Gray RH, Makumbi F, Kagaayi J, Redd AD, Kigozi G, Reynolds SJ, Nalugoda F, Lutalo T, Wawer MJ, Serwadda D, Quinn TC, Tobian AAR.

Lancet Glob Health. 2015 Aug;3(8):e478-e486. doi: 10.1016/S2214-109X(15)00086-8. Epub 2015 Jun 17.

28.

Herpes Simplex [corrected] Virus Type 2 Shedding From Male Circumcision Wounds in Rakai, Uganda.

Grabowski MK, Kigozi G, Gray RH, Armour B, Manucci J, Serwadda D, Redd AD, Nalugoda F, Patel EU, Wawer MJ, Quinn TC, Tobian AA.

J Infect Dis. 2015 Nov 15;212(10):1613-7. doi: 10.1093/infdis/jiv259. Epub 2015 May 5. Erratum in: J Infect Dis. 2016 Jan 1;213(1):167.

29.

HIV shedding from male circumcision wounds in HIV-infected men: a prospective cohort study.

Tobian AA, Kigozi G, Manucci J, Grabowski MK, Serwadda D, Musoke R, Redd AD, Nalugoda F, Reynolds SJ, Kighoma N, Laeyendecker O, Lessler J, Gray RH, Quinn TC, Wawer MJ; Rakai Health Sciences Program.

PLoS Med. 2015 Apr 28;12(4):e1001820. doi: 10.1371/journal.pmed.1001820. eCollection 2015 Apr.

30.

Vaginal Cytomegalovirus Shedding Before and After Initiation of Antiretroviral Therapy in Rakai, Uganda.

Gianella S, Redd AD, Grabowski MK, Tobian AA, Serwadda D, Newell K, Patel EU, Kalibbala S, Ssebbowa P, Gray RH, Quinn TC, Reynolds SJ.

J Infect Dis. 2015 Sep 15;212(6):899-903. doi: 10.1093/infdis/jiv135. Epub 2015 Mar 5.

31.

The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models.

Grabowski MK, Lessler J, Redd AD, Kagaayi J, Laeyendecker O, Ndyanabo A, Nelson MI, Cummings DA, Bwanika JB, Mueller AC, Reynolds SJ, Munshaw S, Ray SC, Lutalo T, Manucci J, Tobian AA, Chang LW, Beyrer C, Jennings JM, Nalugoda F, Serwadda D, Wawer MJ, Quinn TC, Gray RH; Rakai Health Sciences Program.

PLoS Med. 2014 Mar 4;11(3):e1001610. doi: 10.1371/journal.pmed.1001610. eCollection 2014 Mar.

32.

High-risk human papillomavirus viral load and persistence among heterosexual HIV-negative and HIV-positive men.

Grabowski MK, Gray RH, Serwadda D, Kigozi G, Gravitt PE, Nalugoda F, Reynolds SJ, Wawer MJ, Watya S, Quinn TC, Tobian AA.

Sex Transm Infect. 2014 Jun;90(4):337-43. doi: 10.1136/sextrans-2013-051230. Epub 2014 Jan 30.

33.

Molecular tools for studying HIV transmission in sexual networks.

Grabowski MK, Redd AD.

Curr Opin HIV AIDS. 2014 Mar;9(2):126-33. doi: 10.1097/COH.0000000000000040. Review.

34.

Male circumcision and Mycoplasma genitalium infection in female partners: a randomised trial in Rakai, Uganda.

Tobian AA, Gaydos C, Gray RH, Kigozi G, Serwadda D, Quinn N, Grabowski MK, Musoke R, Ndyanabo A, Nalugoda F, Wawer MJ, Quinn TC.

Sex Transm Infect. 2014 Mar;90(2):150-4. doi: 10.1136/sextrans-2013-051293. Epub 2013 Nov 20.

35.

HIV type 1 polymerase gene polymorphisms are associated with phenotypic differences in replication capacity and disease progression.

Ng OT, Laeyendecker O, Redd AD, Munshaw S, Grabowski MK, Paquet AC, Evans MC, Haddad M, Huang W, Robb ML, Reynolds SJ, Gray RH, Wawer MJ, Serwadda D, Eshleman SH, Quinn TC.

J Infect Dis. 2014 Jan 1;209(1):66-73. doi: 10.1093/infdis/jit425. Epub 2013 Aug 6.

36.

Reactivation of herpes simplex virus type 2 after initiation of antiretroviral therapy.

Tobian AA, Grabowski MK, Serwadda D, Newell K, Ssebbowa P, Franco V, Nalugoda F, Wawer MJ, Gray RH, Quinn TC, Reynolds SJ; Rakai Health Sciences Program.

J Infect Dis. 2013 Sep 1;208(5):839-46. doi: 10.1093/infdis/jit252. Epub 2013 Jun 28.

37.

Differential specificity of HIV incidence assays in HIV subtypes A and D-infected individuals from Rakai, Uganda.

Mullis CE, Munshaw S, Grabowski MK, Eshleman SH, Serwadda D, Brookmeyer R, Nalugoda F, Kigozi G, Kagaayi J, Tobian AA, Wawer M, Gray RH, Quinn TC, Laeyendecker O.

AIDS Res Hum Retroviruses. 2013 Aug;29(8):1146-50. doi: 10.1089/AID.2012.0105. Epub 2013 May 29.

38.

Liver stiffness is associated with monocyte activation in HIV-infected Ugandans without viral hepatitis.

Redd AD, Wendel SK, Grabowski MK, Ocama P, Kiggundu V, Bbosa F, Boaz I, Balagopal A, Reynolds SJ, Gray RH, Serwadda D, Kirk GD, Quinn TC, Stabinski L.

AIDS Res Hum Retroviruses. 2013 Jul;29(7):1026-30. doi: 10.1089/AID.2013.0004. Epub 2013 May 8.

39.

Male circumcision decreases high-risk human papillomavirus viral load in female partners: a randomized trial in Rakai, Uganda.

Davis MA, Gray RH, Grabowski MK, Serwadda D, Kigozi G, Gravitt PE, Nalugoda F, Watya S, Wawer MJ, Quinn TC, Tobian AA.

Int J Cancer. 2013 Sep 1;133(5):1247-52. doi: 10.1002/ijc.28100. Epub 2013 Mar 7.

40.

Human papillomavirus clearance among males is associated with HIV acquisition and increased dendritic cell density in the foreskin.

Tobian AA, Grabowski MK, Kigozi G, Redd AD, Eaton KP, Serwadda D, Cornish TC, Nalugoda F, Watya S, Buwembo D, Nkale J, Wawer MJ, Quinn TC, Gray RH.

J Infect Dis. 2013 Jun 1;207(11):1713-22. doi: 10.1093/infdis/jit035. Epub 2013 Jan 23.

41.

Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions.

Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, Ricklefs S, Kiwanuka N, Nyein PH, Lutalo T, Grabowski MK, Kong X, Manucci J, Sewankambo N, Wawer MJ, Gray RH, Porcella SF, Fauci AS, Sagar M, Serwadda D, Quinn TC.

J Infect Dis. 2012 Nov;206(9):1433-42. doi: 10.1093/infdis/jis503. Epub 2012 Sep 19. Erratum in: J Infect Dis. 2013 Feb 1;207(3):546.

42.

The rates of HIV superinfection and primary HIV incidence in a general population in Rakai, Uganda.

Redd AD, Mullis CE, Serwadda D, Kong X, Martens C, Ricklefs SM, Tobian AA, Xiao C, Grabowski MK, Nalugoda F, Kigozi G, Laeyendecker O, Kagaayi J, Sewankambo N, Gray RH, Porcella SF, Wawer MJ, Quinn TC.

J Infect Dis. 2012 Jul 15;206(2):267-74. doi: 10.1093/infdis/jis325. Epub 2012 Jun 5.

43.

High-risk human papillomavirus prevalence is associated with HIV infection among heterosexual men in Rakai, Uganda.

Tobian AA, Grabowski MK, Kigozi G, Gravitt PE, Eaton KP, Serwadda D, Nalugoda F, Wawer MJ, Quinn TC, Gray RH.

Sex Transm Infect. 2013 Mar;89(2):122-7. doi: 10.1136/sextrans-2012-050524. Epub 2012 May 24.

44.

Investigation of pre-diagnostic virological markers for progressive multifocal leukoencephalopathy in human immunodeficiency virus-infected patients.

Grabowski MK, Viscidi RP, Margolick JB, Jacobson LP, Shah KV.

J Med Virol. 2009 Jul;81(7):1140-50. doi: 10.1002/jmv.21493.

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