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Items: 1 to 50 of 121

1.

N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase.

Cordeiro RL, Pirolla RAS, Persinoti GF, Gozzo FC, de Giuseppe PO, Murakami MT.

J Mol Biol. 2019 Feb 15;431(4):732-747. doi: 10.1016/j.jmb.2018.12.017. Epub 2019 Jan 11.

PMID:
30641082
2.

TopoLink: Evaluation of structural models using chemical crosslinking distance constraints.

Ferrari AJR, Clasen MA, Kurt L, Carvalho PC, Gozzo FC, Martínez L.

Bioinformatics. 2019 Jan 10. doi: 10.1093/bioinformatics/btz014. [Epub ahead of print]

PMID:
30629147
3.

Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints.

Ferrari AJR, Gozzo FC, Martínez L.

Bioinformatics. 2019 Jan 10. doi: 10.1093/bioinformatics/btz013. [Epub ahead of print]

PMID:
30629125
4.

Is the formation of N-heterocyclic carbenes (NHCs) a feasible mechanism for the distillation of imidazolium ionic liquids?

Diniz JR, de Lima TB, Galaverna R, de Oliveira AL, Ferreira DAC, Gozzo FC, Eberlin MN, Dupont J, Neto BAD.

Phys Chem Chem Phys. 2018 Oct 3;20(38):24716-24725. doi: 10.1039/c8cp03609h.

PMID:
30225491
5.

Combined Role of the Asymmetric Counteranion-Directed Catalysis (ACDC) and Ionic Liquid Effect for the Enantioselective Biginelli Multicomponent Reaction.

Alvim HGO, Pinheiro DLJ, Carvalho-Silva VH, Fioramonte M, Gozzo FC, da Silva WA, Amarante GW, Neto BAD.

J Org Chem. 2018 Oct 5;83(19):12143-12153. doi: 10.1021/acs.joc.8b02101. Epub 2018 Sep 13.

PMID:
30160956
6.

The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.

Dos Santos CR, de Giuseppe PO, de Souza FHM, Zanphorlin LM, Domingues MN, Pirolla RAS, Honorato RV, Tonoli CCC, de Morais MAB, de Matos Martins VP, Fonseca LM, Büchli F, de Oliveira PSL, Gozzo FC, Murakami MT.

Biotechnol Biofuels. 2018 Aug 11;11:223. doi: 10.1186/s13068-018-1212-y. eCollection 2018.

7.

Ovarian environment aging: follicular fluid lipidomic and related metabolic pathways.

Cordeiro FB, Montani DA, Pilau EJ, Gozzo FC, Fraietta R, Turco EGL.

J Assist Reprod Genet. 2018 Aug;35(8):1385-1393. doi: 10.1007/s10815-018-1259-5. Epub 2018 Jul 16.

PMID:
30014448
8.

Structural basis of exo-β-mannanase activity in the GH2 family.

Domingues MN, Souza FHM, Vieira PS, de Morais MAB, Zanphorlin LM, Dos Santos CR, Pirolla RAS, Honorato RV, de Oliveira PSL, Gozzo FC, Murakami MT.

J Biol Chem. 2018 Aug 31;293(35):13636-13649. doi: 10.1074/jbc.RA118.002374. Epub 2018 Jul 11.

PMID:
29997257
9.

Evaluation of some effects on plant metabolism through proteins and enzymes in transgenic and non-transgenic soybeans after cultivation with silver nanoparticles.

Galazzi RM, Lopes Júnior CA, de Lima TB, Gozzo FC, Arruda MAZ.

J Proteomics. 2019 Jan 16;191:88-106. doi: 10.1016/j.jprot.2018.03.024. Epub 2018 Mar 24.

PMID:
29581061
10.

XPlex: An Effective, Multiplex Cross-Linking Chemistry for Acidic Residues.

Fioramonte M, de Jesus HCR, Ferrari AJR, Lima DB, Drekener RL, Correia CRD, Oliveira LG, Neves-Ferreira AGDC, Carvalho PC, Gozzo FC.

Anal Chem. 2018 May 15;90(10):6043-6050. doi: 10.1021/acs.analchem.7b05135. Epub 2018 May 2.

PMID:
29565564
11.

Low Bioavailability and High Immunogenicity of a New Brand of E. colil-Asparaginase with Active Host Contaminating Proteins.

Zenatti PP, Migita NA, Cury NM, Mendes-Silva RA, Gozzo FC, de Campos-Lima PO, Yunes JA, Brandalise SR.

EBioMedicine. 2018 Apr;30:158-166. doi: 10.1016/j.ebiom.2018.03.005. Epub 2018 Mar 9.

12.

Heteropolyacid-Containing Ionic Liquid-Catalyzed Multicomponent Synthesis of Bridgehead Nitrogen Heterocycles: Mechanisms and Mitochondrial Staining.

Alvim HGO, Correa JR, Assumpção JAF, da Silva WA, Rodrigues MO, de Macedo JL, Fioramonte M, Gozzo FC, Gatto CC, Neto BAD.

J Org Chem. 2018 Apr 6;83(7):4044-4053. doi: 10.1021/acs.joc.8b00472. Epub 2018 Mar 29.

PMID:
29547280
13.

Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.

Dos Santos RN, Ferrari AJR, de Jesus HCR, Gozzo FC, Morcos F, Martínez L.

Bioinformatics. 2018 Jul 1;34(13):2201-2208. doi: 10.1093/bioinformatics/bty074.

PMID:
29447388
14.

Revealing the interaction mode of the highly flexible Sorghum bicolor Hsp70/Hsp90 organizing protein (Hop): A conserved carboxylate clamp confers high affinity binding to Hsp90.

Adão R, Zanphorlin LM, Lima TB, Sriranganadane D, Dahlström KM, Pinheiro GMS, Gozzo FC, Barbosa LRS, Ramos CHI.

J Proteomics. 2019 Jan 16;191:191-201. doi: 10.1016/j.jprot.2018.02.007. Epub 2018 Feb 6.

PMID:
29425735
15.

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.

Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS.

Nat Protoc. 2018 Mar;13(3):431-458. doi: 10.1038/nprot.2017.113. Epub 2018 Feb 1.

PMID:
29388937
16.

Crystal Structure and Regulation of the Citrus Pol III Repressor MAF1 by Auxin and Phosphorylation.

Soprano AS, Giuseppe PO, Shimo HM, Lima TB, Batista FAH, Righetto GL, Pereira JGC, Granato DC, Nascimento AFZ, Gozzo FC, de Oliveira PSL, Figueira ACM, Smetana JHC, Paes Leme AF, Murakami MT, Benedetti CE.

Structure. 2017 Sep 5;25(9):1360-1370.e4. doi: 10.1016/j.str.2017.07.004. Epub 2017 Aug 3.

17.

Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.

Moreira LM, Soares MR, Facincani AP, Ferreira CB, Ferreira RM, Ferro MIT, Gozzo FC, Felestrino ÉB, Assis RAB, Garcia CCM, Setubal JC, Ferro JA, de Oliveira JCF.

BMC Microbiol. 2017 Jul 11;17(1):155. doi: 10.1186/s12866-017-1063-x.

18.

Simplifying the human serum proteome for discriminating patients with bipolar disorder of other psychiatry conditions.

de Jesus JR, Galazzi RM, de Lima TB, Banzato CEM, de Almeida Lima E Silva LF, de Rosalmeida Dantas C, Gozzo FC, Arruda MAZ.

Clin Biochem. 2017 Dec;50(18):1118-1125. doi: 10.1016/j.clinbiochem.2017.06.009. Epub 2017 Jun 27.

PMID:
28662995
19.

DIA is not a new mass spectrometry acquisition method.

Martins-de-Souza D, Faça VM, Gozzo FC.

Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201700017. Epub 2017 Mar 3.

PMID:
28130891
20.

Interferon-gamma activity is potentiated by an intracellular peptide derived from the human 19S ATPase regulatory subunit 4 of the proteasome.

Monte ER, Rossato C, Llanos RP, Russo LC, de Castro LM, Gozzo FC, de Araujo CB, Peron JP, Sant'Anna OA, Ferro ES, Rioli V.

J Proteomics. 2017 Jan 16;151:74-82. doi: 10.1016/j.jprot.2016.08.003. Epub 2016 Aug 11.

PMID:
27523479
21.

Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus.

Scorsato V, Lima TB, Righetto GL, Zanchin NI, Brandão-Neto J, Sandy J, Pereira HD, Ferrari ÁJ, Gozzo FC, Smetana JH, Aparicio R.

Sci Rep. 2016 Aug 4;6:30813. doi: 10.1038/srep30813.

22.

Heat Shock Protein 90 kDa (Hsp90) Has a Second Functional Interaction Site with the Mitochondrial Import Receptor Tom70.

Zanphorlin LM, Lima TB, Wong MJ, Balbuena TS, Minetti CA, Remeta DP, Young JC, Barbosa LR, Gozzo FC, Ramos CH.

J Biol Chem. 2016 Sep 2;291(36):18620-31. doi: 10.1074/jbc.M115.710137. Epub 2016 Jul 8.

23.

Scaffold proteins LACK and TRACK as potential drug targets in kinetoplastid parasites: Development of inhibitors.

Qvit N, Schechtman D, Pena DA, Berti DA, Soares CO, Miao Q, Liang LA, Baron LA, Teh-Poot C, Martínez-Vega P, Ramirez-Sierra MJ, Churchill E, Cunningham AD, Malkovskiy AV, Federspiel NA, Gozzo FC, Torrecilhas AC, Manso Alves MJ, Jardim A, Momar N, Dumonteil E, Mochly-Rosen D.

Int J Parasitol Drugs Drug Resist. 2016 Feb 12;6(1):74-84. doi: 10.1016/j.ijpddr.2016.02.003. eCollection 2016 Apr.

24.

The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism.

Freitas FZ, Virgilio S, Cupertino FB, Kowbel DJ, Fioramonte M, Gozzo FC, Glass NL, Bertolini MC.

G3 (Bethesda). 2016 May 3;6(5):1327-43. doi: 10.1534/g3.116.028506.

25.

Fullerene separation and identification by traveling wave ion mobility mass spectrometry in laser desorption processes during asphaltene analysis.

Koolen HH, Klitzke CF, Cardoso FM, Rosa PT, Gozzo FC.

J Mass Spectrom. 2016 Mar;51(3):254-6. doi: 10.1002/jms.3745. No abstract available.

PMID:
26956392
26.

An Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding.

Melchior JT, Walker RG, Morris J, Jones MK, Segrest JP, Lima DB, Carvalho PC, Gozzo FC, Castleberry M, Thompson TB, Davidson WS.

J Biol Chem. 2016 Mar 4;291(10):5439-51. doi: 10.1074/jbc.M115.706093. Epub 2016 Jan 11.

27.

Chiral Platinum(II) Complexes Featuring Phosphine and Chloroquine Ligands as Cytotoxic and Monofunctional DNA-Binding Agents.

Villarreal W, Colina-Vegas L, Rodrigues de Oliveira C, Tenorio JC, Ellena J, Gozzo FC, Cominetti MR, Ferreira AG, Ferreira MA, Navarro M, Batista AA.

Inorg Chem. 2015 Dec 21;54(24):11709-20. doi: 10.1021/acs.inorgchem.5b01647. Epub 2015 Nov 25.

PMID:
26606142
28.

Primary Structure of a Trypsin Inhibitor (Copaifera langsdorffii Trypsin Inhibitor-1) Obtained from C. langsdorffii Seeds.

Silva JA, Pompeu DG, Smolka MB, Gozzo FC, Comar M Jr, Eberlin MN, Granjeiro PA, Marangoni S.

J Biomol Tech. 2015 Sep;26(3):90-102. doi: 10.7171/jbt.15-2603-002.

29.

[des-Arg(1)]-Proctolin: A novel NEP-like enzyme inhibitor identified in Tityus serrulatus venom.

Duzzi B, Cajado-Carvalho D, Kuniyoshi AK, Kodama RT, Gozzo FC, Fioramonte M, Tambourgi DV, Portaro FV, Rioli V.

Peptides. 2016 Jun;80:18-24. doi: 10.1016/j.peptides.2015.05.013. Epub 2015 Jun 6.

PMID:
26056922
30.

Evaluation of proteome alterations induced by cadmium stress in sunflower (Helianthus annuus L.) cultures.

Lopes Júnior CA, Barbosa Hde S, Moretto Galazzi R, Ferreira Koolen HH, Gozzo FC, Arruda MA.

Ecotoxicol Environ Saf. 2015 Sep;119:170-7. doi: 10.1016/j.ecoenv.2015.05.016. Epub 2015 May 22.

PMID:
26004357
31.

Corrigendum: αB-crystallin interacts with and prevents stress-activated proteolysis of focal adhesion kinase by calpain in cardiomyocytes.

Pereira MB, Santos AM, Gonçalves DC, Cardoso AC, Consonni SR, Gozzo FC, Oliveira PS, Pereira AH, Figueiredo AR, Tiroli-Cepeda AO, Ramos CH, de Thomaz AA, Cesar CL, Franchini KG.

Nat Commun. 2015 Mar 23;6:6508. doi: 10.1038/ncomms7508. No abstract available.

PMID:
25799360
32.

Conformational dynamics of α-synuclein: insights from mass spectrometry.

Phillips AS, Gomes AF, Kalapothakis JM, Gillam JE, Gasparavicius J, Gozzo FC, Kunath T, MacPhee C, Barran PE.

Analyst. 2015 May 7;140(9):3070-81. doi: 10.1039/c4an02306d. Epub 2015 Mar 10.

PMID:
25756329
33.

SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.

Lima DB, de Lima TB, Balbuena TS, Neves-Ferreira AGC, Barbosa VC, Gozzo FC, Carvalho PC.

J Proteomics. 2015 Nov 3;129:51-55. doi: 10.1016/j.jprot.2015.01.013. Epub 2015 Jan 29.

PMID:
25638023
34.

Anxiogenic-like effects induced by hemopressin in rats.

Fogaça MV, Sonego AB, Rioli V, Gozzo FC, Dale CS, Ferro ES, Guimarães FS.

Pharmacol Biochem Behav. 2015 Feb;129:7-13. doi: 10.1016/j.pbb.2014.11.013. Epub 2014 Nov 22.

PMID:
25462856
35.

Chemotactic signal transduction and phosphate metabolism as adaptive strategies during citrus canker induction by Xanthomonas citri.

Moreira LM, Facincani AP, Ferreira CB, Ferreira RM, Ferro MI, Gozzo FC, de Oliveira JC, Ferro JA, Soares MR.

Funct Integr Genomics. 2015 Mar;15(2):197-210. doi: 10.1007/s10142-014-0414-z. Epub 2014 Nov 18.

PMID:
25403594
36.

αB-crystallin interacts with and prevents stress-activated proteolysis of focal adhesion kinase by calpain in cardiomyocytes.

Pereira MB, Santos AM, Gonçalves DC, Cardoso AC, Consonni SR, Gozzo FC, Oliveira PS, Pereira AH, Figueiredo AR, Tiroli-Cepeda AO, Ramos CH, de Thomaz AA, Cesar CL, Franchini KG.

Nat Commun. 2014 Oct 16;5:5159. doi: 10.1038/ncomms6159. Erratum in: Nat Commun. 2015;6:6508.

PMID:
25319025
37.

Effects of cadmium and copper biosorption on Chlorella vulgaris.

de Abreu FC, da Costa PN, Brondi AM, Pilau EJ, Gozzo FC, Eberlin MN, Trevisan MG, Garcia JS.

Bull Environ Contam Toxicol. 2014 Oct;93(4):405-9. doi: 10.1007/s00128-014-1363-x. Epub 2014 Aug 24.

PMID:
25151280
38.

Hyaluronidase alters the lipid profile of cumulus cells as detected by MALDI-TOF MS and multivariate analysis.

Montani DA, Regiani T, Victorino AB, Camillo J, Pilau EJ, Gozzo FC, Zylbersztejn DS, Ferreira CR, Lo Turco EG.

Lipids. 2014 Sep;49(9):957-62. doi: 10.1007/s11745-014-3931-6. Epub 2014 Jul 26.

PMID:
25063017
39.

Metal ions bound to the human milk immunoglobulin A: metalloproteomic approach.

Pozzi CM, Braga CP, Vieira JC, Cavecci B, Vitor de Queiroz J, de Souza Barbosa H, Arruda MA, Gozzo FC, Padilha Pde M.

Food Chem. 2015 Jan 1;166:492-7. doi: 10.1016/j.foodchem.2014.06.040. Epub 2014 Jun 17.

PMID:
25053085
40.

Maldi-tof fingerprinting of seminal plasma lipids in the study of human male infertility.

Camargo M, Intasqui P, de Lima CB, Montani DA, Nichi M, Pilau EJ, Gozzo FC, Lo Turco EG, Bertolla RP.

Lipids. 2014 Sep;49(9):943-56. doi: 10.1007/s11745-014-3922-7. Epub 2014 Jun 17.

PMID:
24934590
41.

Cell kinetics, DNA integrity, differentiation, and lipid fingerprinting analysis of rabbit adipose-derived stem cells.

Barretto LS, Lessio C, Sawaki e Nakamura AN, Lo Turco EG, da Silva CG, Zambon JP, Gozzo FC, Pilau EJ, de Almeida FG.

In Vitro Cell Dev Biol Anim. 2014 Oct;50(9):831-9. doi: 10.1007/s11626-014-9782-x. Epub 2014 Jun 17.

PMID:
24934234
42.

Imidate-based cross-linkers for structural proteomics: increased charge of protein and peptide ions and CID and ECD fragmentation studies.

Koolen HH, Gomes AF, Schwab NV, Eberlin MN, Gozzo FC.

J Am Soc Mass Spectrom. 2014 Jul;25(7):1181-91. doi: 10.1007/s13361-014-0900-5. Epub 2014 Apr 30.

PMID:
24781457
43.

A novel intracellular peptide derived from g1/s cyclin d2 induces cell death.

de Araujo CB, Russo LC, Castro LM, Forti FL, do Monte ER, Rioli V, Gozzo FC, Colquhoun A, Ferro ES.

J Biol Chem. 2014 Jun 13;289(24):16711-26. doi: 10.1074/jbc.M113.537118. Epub 2014 Apr 24.

44.

Peptidomic analysis of the neurolysin-knockout mouse brain.

Castro LM, Cavalcanti DM, Araujo CB, Rioli V, Icimoto MY, Gozzo FC, Juliano M, Juliano L, Oliveira V, Ferro ES.

J Proteomics. 2014 Dec 5;111:238-48. doi: 10.1016/j.jprot.2014.03.043. Epub 2014 Apr 13.

PMID:
24727097
45.

Neurolysin knockout mice generation and initial phenotype characterization.

Cavalcanti DM, Castro LM, Rosa Neto JC, Seelaender M, Neves RX, Oliveira V, Forti FL, Iwai LK, Gozzo FC, Todiras M, Schadock I, Barros CC, Bader M, Ferro ES.

J Biol Chem. 2014 May 30;289(22):15426-40. doi: 10.1074/jbc.M113.539148. Epub 2014 Apr 9.

46.

Comparative proteomic analysis reveals that T3SS, Tfp, and xanthan gum are key factors in initial stages of Citrus sinensis infection by Xanthomonas citri subsp. citri.

Facincani AP, Moreira LM, Soares MR, Ferreira CB, Ferreira RM, Ferro MI, Ferro JA, Gozzo FC, de Oliveira JC.

Funct Integr Genomics. 2014 Mar;14(1):205-17. doi: 10.1007/s10142-013-0340-5. Epub 2013 Oct 26.

PMID:
24676796
47.

Facts, presumptions, and myths on the solvent-free and catalyst-free Biginelli reaction. What is catalysis for?

Alvim HG, Lima TB, de Oliveira AL, de Oliveira HC, Silva FM, Gozzo FC, Souza RY, da Silva WA, Neto BA.

J Org Chem. 2014 Apr 18;79(8):3383-97. doi: 10.1021/jo5001498. Epub 2014 Apr 7.

PMID:
24665975
48.

Structural and functional characterization of the chaperone Hsp70 from sugarcane. Insights into conformational changes during cycling from cross-linking/mass spectrometry assays.

Tiroli-Cepeda AO, Lima TB, Balbuena TS, Gozzo FC, Ramos CH.

J Proteomics. 2014 Jun 2;104:48-56. doi: 10.1016/j.jprot.2014.02.004. Epub 2014 Feb 12.

PMID:
24530624
49.

A new platinum complex with tryptophan: synthesis, structural characterization, DFT studies and biological assays in vitro over human tumorigenic cells.

Carvalho MA, Shishido SM, Souza BC, de Paiva RE, Gomes AF, Gozzo FC, Formiga AL, Corbi PP.

Spectrochim Acta A Mol Biomol Spectrosc. 2014 Mar 25;122:209-15. doi: 10.1016/j.saa.2013.11.044. Epub 2013 Nov 20.

PMID:
24316534
50.

Lipid profiling of follicular fluid from women undergoing IVF: young poor ovarian responders versus normal responders.

Cataldi T, Cordeiro FB, Costa Ldo V, Pilau EJ, Ferreira CR, Gozzo FC, Eberlin MN, Bertolla RP, Cedenho AP, Turco EG.

Hum Fertil (Camb). 2013 Dec;16(4):269-77. doi: 10.3109/14647273.2013.852255.

PMID:
24295230

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