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Unveiling the interaction between the molecular motor Myosin Vc and the small GTPase Rab3A.

Dolce LG, Ohbayashi N, Silva DFCD, Ferrari AJR, Pirolla RAS, Schwarzer ACAP, Zanphorlin LM, Cabral L, Fioramonte M, Ramos CHI, Gozzo FC, Fukuda M, Giuseppe PO, Murakami MT.

J Proteomics. 2019 Nov 5;212:103549. doi: 10.1016/j.jprot.2019.103549. [Epub ahead of print]


Structural complementarity of distance constraints obtained from chemical cross-linking and amino acid coevolution.

Dos Santos RN, Bottino GF, Gozzo FC, Morcos F, Martínez L.

Proteins. 2019 Nov 6. doi: 10.1002/prot.25843. [Epub ahead of print]


C7orf59/LAMTOR4 phosphorylation and structural flexibility modulate Ragulator assembly.

Rasheed N, Lima TB, Mercaldi GF, Nascimento AFZ, Silva ALS, Righetto GL, Bar-Peled L, Shen K, Sabatini DM, Gozzo FC, Aparicio R, Smetana JHC.

FEBS Open Bio. 2019 Sep;9(9):1589-1602. doi: 10.1002/2211-5463.12700. Epub 2019 Jul 28.


First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.

Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews P, Bernfur K, Borchers C, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis T, Degliesposti G, Dong MQ, Edinger N, Emanuelsson C, Gay M, Götze M, Gomes-Neto F, Gozzo FC, Gutierrez C, Haupt C, Heck AJR, Herzog F, Huang L, Hoopmann MR, Kalisman N, Klykov O, Kukačka Z, Liu F, MacCoss MJ, Mechtler K, Mesika R, Moritz RL, Nagaraj N, Nesati V, Neves-Ferreira AGC, Ninnis R, Novák P, O'Reilly FJ, Pelzing M, Petrotchenko E, Piersimoni L, Plasencia M, Pukala T, Rand KD, Rappsilber J, Reichmann D, Sailer C, Sarnowski CP, Scheltema RA, Schmidt C, Schriemer DC, Shi Y, Skehel JM, Slavin M, Sobott F, Solis-Mezarino V, Stephanowitz H, Stengel F, Stieger CE, Trabjerg E, Trnka M, Vilaseca M, Viner R, Xiang Y, Yilmaz S, Zelter A, Ziemianowicz D, Leitner A, Sinz A.

Anal Chem. 2019 Jun 4;91(11):6953-6961. doi: 10.1021/acs.analchem.9b00658. Epub 2019 May 22.


Understanding mechanisms of oocyte development by follicular fluid lipidomics.

Montani DA, Braga DPAF, Borges E Jr, Camargo M, Cordeiro FB, Pilau EJ, Gozzo FC, Fraietta R, Lo Turco EG.

J Assist Reprod Genet. 2019 May;36(5):1003-1011. doi: 10.1007/s10815-019-01428-7. Epub 2019 Apr 23.


N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase.

Cordeiro RL, Pirolla RAS, Persinoti GF, Gozzo FC, de Giuseppe PO, Murakami MT.

J Mol Biol. 2019 Feb 15;431(4):732-747. doi: 10.1016/j.jmb.2018.12.017. Epub 2019 Jan 11.


TopoLink: evaluation of structural models using chemical crosslinking distance constraints.

Ferrari AJR, Clasen MA, Kurt L, Carvalho PC, Gozzo FC, Martínez L.

Bioinformatics. 2019 Sep 1;35(17):3169-3170. doi: 10.1093/bioinformatics/btz014.


Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints.

Ferrari AJR, Gozzo FC, Martínez L.

Bioinformatics. 2019 Sep 1;35(17):3005-3012. doi: 10.1093/bioinformatics/btz013.


Is the formation of N-heterocyclic carbenes (NHCs) a feasible mechanism for the distillation of imidazolium ionic liquids?

Diniz JR, de Lima TB, Galaverna R, de Oliveira AL, Ferreira DAC, Gozzo FC, Eberlin MN, Dupont J, Neto BAD.

Phys Chem Chem Phys. 2018 Oct 3;20(38):24716-24725. doi: 10.1039/c8cp03609h.


Combined Role of the Asymmetric Counteranion-Directed Catalysis (ACDC) and Ionic Liquid Effect for the Enantioselective Biginelli Multicomponent Reaction.

Alvim HGO, Pinheiro DLJ, Carvalho-Silva VH, Fioramonte M, Gozzo FC, da Silva WA, Amarante GW, Neto BAD.

J Org Chem. 2018 Oct 5;83(19):12143-12153. doi: 10.1021/acs.joc.8b02101. Epub 2018 Sep 13.


The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans.

Dos Santos CR, de Giuseppe PO, de Souza FHM, Zanphorlin LM, Domingues MN, Pirolla RAS, Honorato RV, Tonoli CCC, de Morais MAB, de Matos Martins VP, Fonseca LM, Büchli F, de Oliveira PSL, Gozzo FC, Murakami MT.

Biotechnol Biofuels. 2018 Aug 11;11:223. doi: 10.1186/s13068-018-1212-y. eCollection 2018.


Ovarian environment aging: follicular fluid lipidomic and related metabolic pathways.

Cordeiro FB, Montani DA, Pilau EJ, Gozzo FC, Fraietta R, Turco EGL.

J Assist Reprod Genet. 2018 Aug;35(8):1385-1393. doi: 10.1007/s10815-018-1259-5. Epub 2018 Jul 16.


Structural basis of exo-β-mannanase activity in the GH2 family.

Domingues MN, Souza FHM, Vieira PS, de Morais MAB, Zanphorlin LM, Dos Santos CR, Pirolla RAS, Honorato RV, de Oliveira PSL, Gozzo FC, Murakami MT.

J Biol Chem. 2018 Aug 31;293(35):13636-13649. doi: 10.1074/jbc.RA118.002374. Epub 2018 Jul 11.


Evaluation of some effects on plant metabolism through proteins and enzymes in transgenic and non-transgenic soybeans after cultivation with silver nanoparticles.

Galazzi RM, Lopes Júnior CA, de Lima TB, Gozzo FC, Arruda MAZ.

J Proteomics. 2019 Jan 16;191:88-106. doi: 10.1016/j.jprot.2018.03.024. Epub 2018 Mar 24.


XPlex: An Effective, Multiplex Cross-Linking Chemistry for Acidic Residues.

Fioramonte M, de Jesus HCR, Ferrari AJR, Lima DB, Drekener RL, Correia CRD, Oliveira LG, Neves-Ferreira AGDC, Carvalho PC, Gozzo FC.

Anal Chem. 2018 May 15;90(10):6043-6050. doi: 10.1021/acs.analchem.7b05135. Epub 2018 May 2.


Low Bioavailability and High Immunogenicity of a New Brand of E. colil-Asparaginase with Active Host Contaminating Proteins.

Zenatti PP, Migita NA, Cury NM, Mendes-Silva RA, Gozzo FC, de Campos-Lima PO, Yunes JA, Brandalise SR.

EBioMedicine. 2018 Apr;30:158-166. doi: 10.1016/j.ebiom.2018.03.005. Epub 2018 Mar 9.


Heteropolyacid-Containing Ionic Liquid-Catalyzed Multicomponent Synthesis of Bridgehead Nitrogen Heterocycles: Mechanisms and Mitochondrial Staining.

Alvim HGO, Correa JR, Assumpção JAF, da Silva WA, Rodrigues MO, de Macedo JL, Fioramonte M, Gozzo FC, Gatto CC, Neto BAD.

J Org Chem. 2018 Apr 6;83(7):4044-4053. doi: 10.1021/acs.joc.8b00472. Epub 2018 Mar 29.


Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.

Dos Santos RN, Ferrari AJR, de Jesus HCR, Gozzo FC, Morcos F, Martínez L.

Bioinformatics. 2018 Jul 1;34(13):2201-2208. doi: 10.1093/bioinformatics/bty074.


Revealing the interaction mode of the highly flexible Sorghum bicolor Hsp70/Hsp90 organizing protein (Hop): A conserved carboxylate clamp confers high affinity binding to Hsp90.

Adão R, Zanphorlin LM, Lima TB, Sriranganadane D, Dahlström KM, Pinheiro GMS, Gozzo FC, Barbosa LRS, Ramos CHI.

J Proteomics. 2019 Jan 16;191:191-201. doi: 10.1016/j.jprot.2018.02.007. Epub 2018 Feb 6.


Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.

Lima DB, Melchior JT, Morris J, Barbosa VC, Chamot-Rooke J, Fioramonte M, Souza TACB, Fischer JSG, Gozzo FC, Carvalho PC, Davidson WS.

Nat Protoc. 2018 Mar;13(3):431-458. doi: 10.1038/nprot.2017.113. Epub 2018 Feb 1.


Crystal Structure and Regulation of the Citrus Pol III Repressor MAF1 by Auxin and Phosphorylation.

Soprano AS, Giuseppe PO, Shimo HM, Lima TB, Batista FAH, Righetto GL, Pereira JGC, Granato DC, Nascimento AFZ, Gozzo FC, de Oliveira PSL, Figueira ACM, Smetana JHC, Paes Leme AF, Murakami MT, Benedetti CE.

Structure. 2017 Sep 5;25(9):1360-1370.e4. doi: 10.1016/j.str.2017.07.004. Epub 2017 Aug 3.


Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.

Moreira LM, Soares MR, Facincani AP, Ferreira CB, Ferreira RM, Ferro MIT, Gozzo FC, Felestrino ÉB, Assis RAB, Garcia CCM, Setubal JC, Ferro JA, de Oliveira JCF.

BMC Microbiol. 2017 Jul 11;17(1):155. doi: 10.1186/s12866-017-1063-x.


Simplifying the human serum proteome for discriminating patients with bipolar disorder of other psychiatry conditions.

de Jesus JR, Galazzi RM, de Lima TB, Banzato CEM, de Almeida Lima E Silva LF, de Rosalmeida Dantas C, Gozzo FC, Arruda MAZ.

Clin Biochem. 2017 Dec;50(18):1118-1125. doi: 10.1016/j.clinbiochem.2017.06.009. Epub 2017 Jun 27.


DIA is not a new mass spectrometry acquisition method.

Martins-de-Souza D, Faça VM, Gozzo FC.

Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201700017. Epub 2017 Mar 3.


Interferon-gamma activity is potentiated by an intracellular peptide derived from the human 19S ATPase regulatory subunit 4 of the proteasome.

Monte ER, Rossato C, Llanos RP, Russo LC, de Castro LM, Gozzo FC, de Araujo CB, Peron JP, Sant'Anna OA, Ferro ES, Rioli V.

J Proteomics. 2017 Jan 16;151:74-82. doi: 10.1016/j.jprot.2016.08.003. Epub 2016 Aug 11.


Crystal structure of the human Tip41 orthologue, TIPRL, reveals a novel fold and a binding site for the PP2Ac C-terminus.

Scorsato V, Lima TB, Righetto GL, Zanchin NI, Brandão-Neto J, Sandy J, Pereira HD, Ferrari ÁJ, Gozzo FC, Smetana JH, Aparicio R.

Sci Rep. 2016 Aug 4;6:30813. doi: 10.1038/srep30813.


Heat Shock Protein 90 kDa (Hsp90) Has a Second Functional Interaction Site with the Mitochondrial Import Receptor Tom70.

Zanphorlin LM, Lima TB, Wong MJ, Balbuena TS, Minetti CA, Remeta DP, Young JC, Barbosa LR, Gozzo FC, Ramos CH.

J Biol Chem. 2016 Sep 2;291(36):18620-31. doi: 10.1074/jbc.M115.710137. Epub 2016 Jul 8.


Scaffold proteins LACK and TRACK as potential drug targets in kinetoplastid parasites: Development of inhibitors.

Qvit N, Schechtman D, Pena DA, Berti DA, Soares CO, Miao Q, Liang LA, Baron LA, Teh-Poot C, Martínez-Vega P, Ramirez-Sierra MJ, Churchill E, Cunningham AD, Malkovskiy AV, Federspiel NA, Gozzo FC, Torrecilhas AC, Manso Alves MJ, Jardim A, Momar N, Dumonteil E, Mochly-Rosen D.

Int J Parasitol Drugs Drug Resist. 2016 Feb 12;6(1):74-84. doi: 10.1016/j.ijpddr.2016.02.003. eCollection 2016 Apr.


The SEB-1 Transcription Factor Binds to the STRE Motif in Neurospora crassa and Regulates a Variety of Cellular Processes Including the Stress Response and Reserve Carbohydrate Metabolism.

Freitas FZ, Virgilio S, Cupertino FB, Kowbel DJ, Fioramonte M, Gozzo FC, Glass NL, Bertolini MC.

G3 (Bethesda). 2016 May 3;6(5):1327-43. doi: 10.1534/g3.116.028506.


Fullerene separation and identification by traveling wave ion mobility mass spectrometry in laser desorption processes during asphaltene analysis.

Koolen HH, Klitzke CF, Cardoso FM, Rosa PT, Gozzo FC.

J Mass Spectrom. 2016 Mar;51(3):254-6. doi: 10.1002/jms.3745. No abstract available.


An Evaluation of the Crystal Structure of C-terminal Truncated Apolipoprotein A-I in Solution Reveals Structural Dynamics Related to Lipid Binding.

Melchior JT, Walker RG, Morris J, Jones MK, Segrest JP, Lima DB, Carvalho PC, Gozzo FC, Castleberry M, Thompson TB, Davidson WS.

J Biol Chem. 2016 Mar 4;291(10):5439-51. doi: 10.1074/jbc.M115.706093. Epub 2016 Jan 11.


Chiral Platinum(II) Complexes Featuring Phosphine and Chloroquine Ligands as Cytotoxic and Monofunctional DNA-Binding Agents.

Villarreal W, Colina-Vegas L, Rodrigues de Oliveira C, Tenorio JC, Ellena J, Gozzo FC, Cominetti MR, Ferreira AG, Ferreira MA, Navarro M, Batista AA.

Inorg Chem. 2015 Dec 21;54(24):11709-20. doi: 10.1021/acs.inorgchem.5b01647. Epub 2015 Nov 25.


Primary Structure of a Trypsin Inhibitor (Copaifera langsdorffii Trypsin Inhibitor-1) Obtained from C. langsdorffii Seeds.

Silva JA, Pompeu DG, Smolka MB, Gozzo FC, Comar M Jr, Eberlin MN, Granjeiro PA, Marangoni S.

J Biomol Tech. 2015 Sep;26(3):90-102. doi: 10.7171/jbt.15-2603-002.


[des-Arg(1)]-Proctolin: A novel NEP-like enzyme inhibitor identified in Tityus serrulatus venom.

Duzzi B, Cajado-Carvalho D, Kuniyoshi AK, Kodama RT, Gozzo FC, Fioramonte M, Tambourgi DV, Portaro FV, Rioli V.

Peptides. 2016 Jun;80:18-24. doi: 10.1016/j.peptides.2015.05.013. Epub 2015 Jun 6.


Evaluation of proteome alterations induced by cadmium stress in sunflower (Helianthus annuus L.) cultures.

Lopes Júnior CA, Barbosa Hde S, Moretto Galazzi R, Ferreira Koolen HH, Gozzo FC, Arruda MA.

Ecotoxicol Environ Saf. 2015 Sep;119:170-7. doi: 10.1016/j.ecoenv.2015.05.016. Epub 2015 May 22.


Corrigendum: αB-crystallin interacts with and prevents stress-activated proteolysis of focal adhesion kinase by calpain in cardiomyocytes.

Pereira MB, Santos AM, Gonçalves DC, Cardoso AC, Consonni SR, Gozzo FC, Oliveira PS, Pereira AH, Figueiredo AR, Tiroli-Cepeda AO, Ramos CH, de Thomaz AA, Cesar CL, Franchini KG.

Nat Commun. 2015 Mar 23;6:6508. doi: 10.1038/ncomms7508. No abstract available.


Conformational dynamics of α-synuclein: insights from mass spectrometry.

Phillips AS, Gomes AF, Kalapothakis JM, Gillam JE, Gasparavicius J, Gozzo FC, Kunath T, MacPhee C, Barran PE.

Analyst. 2015 May 7;140(9):3070-81. doi: 10.1039/c4an02306d. Epub 2015 Mar 10.


SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis.

Lima DB, de Lima TB, Balbuena TS, Neves-Ferreira AGC, Barbosa VC, Gozzo FC, Carvalho PC.

J Proteomics. 2015 Nov 3;129:51-55. doi: 10.1016/j.jprot.2015.01.013. Epub 2015 Jan 29.


Anxiogenic-like effects induced by hemopressin in rats.

Fogaça MV, Sonego AB, Rioli V, Gozzo FC, Dale CS, Ferro ES, Guimarães FS.

Pharmacol Biochem Behav. 2015 Feb;129:7-13. doi: 10.1016/j.pbb.2014.11.013. Epub 2014 Nov 22.


Chemotactic signal transduction and phosphate metabolism as adaptive strategies during citrus canker induction by Xanthomonas citri.

Moreira LM, Facincani AP, Ferreira CB, Ferreira RM, Ferro MI, Gozzo FC, de Oliveira JC, Ferro JA, Soares MR.

Funct Integr Genomics. 2015 Mar;15(2):197-210. doi: 10.1007/s10142-014-0414-z. Epub 2014 Nov 18.


αB-crystallin interacts with and prevents stress-activated proteolysis of focal adhesion kinase by calpain in cardiomyocytes.

Pereira MB, Santos AM, Gonçalves DC, Cardoso AC, Consonni SR, Gozzo FC, Oliveira PS, Pereira AH, Figueiredo AR, Tiroli-Cepeda AO, Ramos CH, de Thomaz AA, Cesar CL, Franchini KG.

Nat Commun. 2014 Oct 16;5:5159. doi: 10.1038/ncomms6159. Erratum in: Nat Commun. 2015;6:6508.


Effects of cadmium and copper biosorption on Chlorella vulgaris.

de Abreu FC, da Costa PN, Brondi AM, Pilau EJ, Gozzo FC, Eberlin MN, Trevisan MG, Garcia JS.

Bull Environ Contam Toxicol. 2014 Oct;93(4):405-9. doi: 10.1007/s00128-014-1363-x. Epub 2014 Aug 24.


Hyaluronidase alters the lipid profile of cumulus cells as detected by MALDI-TOF MS and multivariate analysis.

Montani DA, Regiani T, Victorino AB, Camillo J, Pilau EJ, Gozzo FC, Zylbersztejn DS, Ferreira CR, Lo Turco EG.

Lipids. 2014 Sep;49(9):957-62. doi: 10.1007/s11745-014-3931-6. Epub 2014 Jul 26.


Metal ions bound to the human milk immunoglobulin A: metalloproteomic approach.

Pozzi CM, Braga CP, Vieira JC, Cavecci B, Vitor de Queiroz J, de Souza Barbosa H, Arruda MA, Gozzo FC, Padilha Pde M.

Food Chem. 2015 Jan 1;166:492-7. doi: 10.1016/j.foodchem.2014.06.040. Epub 2014 Jun 17.


Maldi-tof fingerprinting of seminal plasma lipids in the study of human male infertility.

Camargo M, Intasqui P, de Lima CB, Montani DA, Nichi M, Pilau EJ, Gozzo FC, Lo Turco EG, Bertolla RP.

Lipids. 2014 Sep;49(9):943-56. doi: 10.1007/s11745-014-3922-7. Epub 2014 Jun 17.


Cell kinetics, DNA integrity, differentiation, and lipid fingerprinting analysis of rabbit adipose-derived stem cells.

Barretto LS, Lessio C, Sawaki e Nakamura AN, Lo Turco EG, da Silva CG, Zambon JP, Gozzo FC, Pilau EJ, de Almeida FG.

In Vitro Cell Dev Biol Anim. 2014 Oct;50(9):831-9. doi: 10.1007/s11626-014-9782-x. Epub 2014 Jun 17.


Imidate-based cross-linkers for structural proteomics: increased charge of protein and peptide ions and CID and ECD fragmentation studies.

Koolen HH, Gomes AF, Schwab NV, Eberlin MN, Gozzo FC.

J Am Soc Mass Spectrom. 2014 Jul;25(7):1181-91. doi: 10.1007/s13361-014-0900-5. Epub 2014 Apr 30.


A novel intracellular peptide derived from g1/s cyclin d2 induces cell death.

de Araujo CB, Russo LC, Castro LM, Forti FL, do Monte ER, Rioli V, Gozzo FC, Colquhoun A, Ferro ES.

J Biol Chem. 2014 Jun 13;289(24):16711-26. doi: 10.1074/jbc.M113.537118. Epub 2014 Apr 24.


Peptidomic analysis of the neurolysin-knockout mouse brain.

Castro LM, Cavalcanti DM, Araujo CB, Rioli V, Icimoto MY, Gozzo FC, Juliano M, Juliano L, Oliveira V, Ferro ES.

J Proteomics. 2014 Dec 5;111:238-48. doi: 10.1016/j.jprot.2014.03.043. Epub 2014 Apr 13.


Neurolysin knockout mice generation and initial phenotype characterization.

Cavalcanti DM, Castro LM, Rosa Neto JC, Seelaender M, Neves RX, Oliveira V, Forti FL, Iwai LK, Gozzo FC, Todiras M, Schadock I, Barros CC, Bader M, Ferro ES.

J Biol Chem. 2014 May 30;289(22):15426-40. doi: 10.1074/jbc.M113.539148. Epub 2014 Apr 9.

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