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Items: 1 to 50 of 132

1.

Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.

Advani J, Verma R, Chatterjee O, Pachouri PK, Upadhyay P, Singh R, Yadav J, Naaz F, Ravikumar R, Buggi S, Suar M, Gupta UD, Pandey A, Chauhan DS, Tripathy SP, Gowda H, Prasad TSK.

Front Microbiol. 2019 Feb 26;10:309. doi: 10.3389/fmicb.2019.00309. eCollection 2019.

2.

Proteomic Changes in Oral Keratinocytes Chronically Exposed to Shisha (Water Pipe).

Patil S, Subbannayya T, Mohan SV, Babu N, Advani J, Sathe G, Rajagopalan P, Patel K, Bhandi S, Solanki H, Sidransky D, Gowda H, Chatterjee A, Ferrari M.

OMICS. 2019 Feb;23(2):86-97. doi: 10.1089/omi.2018.0173.

PMID:
30767727
3.

PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40).

Subbannayya T, Leal-Rojas P, Zhavoronkov A, Ozerov IV, Korzinkin M, Babu N, Radhakrishnan A, Chavan S, Raja R, Pinto SM, Patil AH, Barbhuiya MA, Kumar P, Guerrero-Preston R, Navani S, Tiwari PK, Kumar RV, Prasad TSK, Roa JC, Pandey A, Sidransky D, Gowda H, Izumchenko E, Chatterjee A.

J Cell Commun Signal. 2019 Jan 21. doi: 10.1007/s12079-018-00503-5. [Epub ahead of print]

PMID:
30666556
4.

Multiomic analysis of oral keratinocytes chronically exposed to shisha.

Patil S, Patel K, Advani J, Subbannayya T, Rajagopalan P, Babu N, Solanki H, Bhandi S, Sidransky D, Chatterjee A, Gowda H, Ferrari M.

J Oral Pathol Med. 2019 Jan 19. doi: 10.1111/jop.12828. [Epub ahead of print]

PMID:
30659648
5.

Proteomic Analysis of the Human Anterior Pituitary Gland.

Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK.

OMICS. 2018 Dec;22(12):759-769. doi: 10.1089/omi.2018.0160.

PMID:
30571610
6.

Data from quantitative proteomic analysis of lung adenocarcinoma and squamous cell carcinoma primary tissues using high resolution mass spectrometry.

Khan AA, Mangalaparthi KK, Advani J, Prasad TSK, Gowda H, Jain D, Chatterjee A.

Data Brief. 2018 Jun 22;19:1631-1637. doi: 10.1016/j.dib.2018.06.035. eCollection 2018 Aug.

7.

Identification of potential biomarkers of head and neck squamous cell carcinoma using iTRAQ based quantitative proteomic approach.

Babu N, Mohan S, Nanjappa V, Chavan S, Advani J, Khan AA, Renuse S, Radhakrishnan A, Prasad TSK, Kumar RV, Ray JG, Biswas M, Thiyagarajan S, Califano JA, Sidransky D, Gowda H, Chatterjee A.

Data Brief. 2018 May 24;19:1124-1130. doi: 10.1016/j.dib.2018.05.100. eCollection 2018 Aug.

8.

Rise of Clinical Microbial Proteogenomics: A Multiomics Approach to Nontuberculous Mycobacterium-The Case of Mycobacterium abscessus UC22.

Advani J, Verma R, Chatterjee O, Devasahayam Arokia Balaya R, Najar MA, Ravishankara N, Suresh S, Pachori PK, Gupta UD, Pinto SM, Chauhan DS, Tripathy SP, Gowda H, Prasad TSK.

OMICS. 2019 Jan;23(1):1-16. doi: 10.1089/omi.2018.0116. Epub 2018 Sep 12.

PMID:
30207826
9.

Data on whole genome sequencing of extrapulmonary tuberculosis clinical isolates from India.

Advani J, Sharma K, Verma R, Chatterjee O, Solanki HS, Sharma A, Varma S, Modi M, Ray P, Sharma M, Dhillion MS, Pandey A, Gowda H, Prasad TSK.

Data Brief. 2018 Aug 24;20:617-622. doi: 10.1016/j.dib.2018.08.048. eCollection 2018 Oct.

10.

Comprehensive network map of interferon gamma signaling.

Bhat MY, Solanki HS, Advani J, Khan AA, Keshava Prasad TS, Gowda H, Thiyagarajan S, Chatterjee A.

J Cell Commun Signal. 2018 Dec;12(4):745-751. doi: 10.1007/s12079-018-0486-y. Epub 2018 Sep 6.

11.

Dissecting Candida Pathobiology: Post-Translational Modifications on the Candida tropicalis Proteome.

Patil AH, Datta KK, Behera SK, Kasaragod S, Pinto SM, Koyangana SG, Mathur PP, Gowda H, Pandey A, Prasad TSK.

OMICS. 2018 Aug;22(8):544-552. doi: 10.1089/omi.2018.0093.

PMID:
30106353
12.

A network map of thrombopoietin signaling.

Bhat FA, Advani J, Khan AA, Mohan S, Pal A, Gowda H, Chakrabarti P, Keshava Prasad TS, Chatterjee A.

J Cell Commun Signal. 2018 Dec;12(4):737-743. doi: 10.1007/s12079-018-0480-4. Epub 2018 Jul 24.

13.

Enhanced proteasomal activity is essential for long term survival and recurrence of innately radiation resistant residual glioblastoma cells.

Rajendra J, Datta KK, Ud Din Farooqee SB, Thorat R, Kumar K, Gardi N, Kaur E, Nair J, Salunkhe S, Patkar K, Desai S, Goda JS, Moiyadi A, Dutt A, Venkatraman P, Gowda H, Dutt S.

Oncotarget. 2018 Jun 12;9(45):27667-27681. doi: 10.18632/oncotarget.25351. eCollection 2018 Jun 12.

14.

Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases.

Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV.

Molecules. 2018 Jun 15;23(6). pii: E1454. doi: 10.3390/molecules23061454.

15.

Proteome-wide changes in primary skin keratinocytes exposed to diesel particulate extract-A role for antioxidants in skin health.

Rajagopalan P, Jain AP, Nanjappa V, Patel K, Mangalaparthi KK, Babu N, Cavusoglu N, Roy N, Soeur J, Breton L, Pandey A, Gowda H, Chatterjee A, Misra N.

J Dermatol Sci. 2018 Sep;91(3):239-249. doi: 10.1016/j.jdermsci.2018.05.003. Epub 2018 May 21.

16.

Transcriptional and epigenetic modulation of autophagy promotes EBV oncoprotein EBNA3C induced B-cell survival.

Bhattacharjee S, Bose P, Patel K, Roy SG, Gain C, Gowda H, Robertson ES, Saha A.

Cell Death Dis. 2018 May 22;9(6):605. doi: 10.1038/s41419-018-0668-9.

17.

Membrane Proteome of Invasive Retinoblastoma: Differential Proteins and Biomarkers.

Danda R, Ganapathy K, Sathe G, Madugundu AK, Krishnan UM, Khetan V, Rishi P, Gowda H, Pandey A, Subramanian K, Prasad TSK, Elchuri SV.

Proteomics Clin Appl. 2018 Sep;12(5):e1700101. doi: 10.1002/prca.201700101. Epub 2018 Jun 13.

PMID:
29742327
18.

Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes.

Bhat MY, Advani J, Rajagopalan P, Patel K, Nanjappa V, Solanki HS, Patil AH, Bhat FA, Mathur PP, Nair B, Prasad TSK, Califano JA, Sidransky D, Gowda H, Chatterjee A.

Sci Rep. 2018 May 4;8(1):7040. doi: 10.1038/s41598-018-25498-2.

19.

Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes.

Rajagopalan P, Patel K, Jain AP, Nanjappa V, Datta KK, Subbannayya T, Mangalaparthi KK, Kumari A, Manoharan M, Coral K, Murugan S, Nair B, Prasad TSK, Mathur PP, Gupta R, Gupta R, Khanna-Gupta A, Califano J, Sidransky D, Gowda H, Chatterjee A.

Cancer Biol Ther. 2018;19(9):773-785. doi: 10.1080/15384047.2018.1470724. Epub 2018 May 29.

PMID:
29723088
20.

Identification of spleen tyrosine kinase as a potential therapeutic target for esophageal squamous cell carcinoma using reverse phase protein arrays.

Barbhuiya MA, Kashyap MK, Puttamallesh VN, Kumar RV, Wu X, Pandey A, Gowda H.

Oncotarget. 2018 Jan 1;9(26):18422-18434. doi: 10.18632/oncotarget.24853. eCollection 2018 Apr 6.

21.

Proteomic approach and expression analysis revealed the differential expression of predicted leptospiral proteases capable of ECM degradation.

Dhandapani G, Sikha T, Pinto SM, Kiran Kumar M, Patel K, Kumar M, Kumar V, Tennyson J, Satheeshkumar PK, Gowda H, Keshava Prasad TS, Madanan MG.

Biochim Biophys Acta Proteins Proteom. 2018 May - Jun;1866(5-6):712-721. doi: 10.1016/j.bbapap.2018.04.006. Epub 2018 Apr 12.

PMID:
29654978
22.

Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor.

Solanki HS, Raja R, Zhavoronkov A, Ozerov IV, Artemov AV, Advani J, Radhakrishnan A, Babu N, Puttamallesh VN, Syed N, Nanjappa V, Subbannayya T, Sahasrabuddhe NA, Patil AH, Prasad TSK, Gaykalova D, Chang X, Sathyendran R, Mathur PP, Rangarajan A, Sidransky D, Pandey A, Izumchenko E, Gowda H, Chatterjee A.

Oncoscience. 2018 Feb 23;5(1-2):21-38. doi: 10.18632/oncoscience.395. eCollection 2018 Jan.

23.

Role of protein kinase N2 (PKN2) in cigarette smoke-mediated oncogenic transformation of oral cells.

Rajagopalan P, Nanjappa V, Patel K, Jain AP, Mangalaparthi KK, Patil AH, Nair B, Mathur PP, Keshava Prasad TS, Califano JA, Sidransky D, Gowda H, Chatterjee A.

J Cell Commun Signal. 2018 Dec;12(4):709-721. doi: 10.1007/s12079-017-0442-2. Epub 2018 Feb 26.

24.

Depletion of keratin 8/18 modulates oncogenic potential by governing multiple signaling pathways.

Tiwari R, Sahu I, Soni BL, Sathe GJ, Thapa P, Patel P, Sinha S, Vadivel CK, Patel S, Jamghare SN, Oak S, Thorat R, Gowda H, Vaidya MM.

FEBS J. 2018 Apr;285(7):1251-1276. doi: 10.1111/febs.14401. Epub 2018 Feb 27.

PMID:
29427328
25.

Question 2: Is it safe to use the centre of the heel for obtaining capillary blood samples in neonates?

Noureldein M, Gowda H.

Arch Dis Child. 2018 Apr;103(4):401-404. doi: 10.1136/archdischild-2017-314214. Epub 2018 Jan 18. No abstract available.

PMID:
29348114
26.

miRNA and Proteomic Dysregulation in Non-Small Cell Lung Cancer in Response to Cigarette Smoke.

Babu N, Advani J, Solanki HS, Patel K, Jain A, Khan AA, Radhakrishnan A, Sahasrabuddhe NA, Mathur PP, Nair B, Keshava Prasad TS, Chang X, Sidransky D, Gowda H, Chatterjee A.

Microrna. 2018;7(1):38-53. doi: 10.2174/2211536607666180103165343.

PMID:
29299995
27.

Chronic Exposure to Cigarette Smoke and Chewing Tobacco Alters Expression of microRNAs in Esophageal Epithelial Cells.

Khan AA, Advani J, Patel K, Nanjappa V, Datta KK, Solanki HS, Kumar P, Mathur PP, Nair B, Keshava Prasad TS, Chatterjee A, Gowda H.

Microrna. 2018;7(1):28-37. doi: 10.2174/2211536607666171213123907.

PMID:
29237392
28.

Bioinformatics Advances to Accelerate Omics Innovations and Applications in the Postgenomic Era.

Advani J, Subbannayya Y, Gowda H, Chatterjee A.

OMICS. 2017 Dec;21(12):750. doi: 10.1089/omi.2017.0158. Epub 2017 Nov 21. No abstract available.

PMID:
29161519
29.

"Omics" of Food-Borne Gastroenteritis: Global Proteomic and Mutagenic Analysis of Salmonella enterica Serovar Enteritidis.

Arunima A, Yelamanchi SD, Padhi C, Jaiswal S, Ryan D, Gupta B, Sathe G, Advani J, Gowda H, Prasad TSK, Suar M.

OMICS. 2017 Oct;21(10):571-583. doi: 10.1089/omi.2017.0112.

PMID:
29049011
30.

Cigarette smoke induces mitochondrial metabolic reprogramming in lung cells.

Solanki HS, Babu N, Jain AP, Bhat MY, Puttamallesh VN, Advani J, Raja R, Mangalaparthi KK, Kumar MM, Prasad TSK, Mathur PP, Sidransky D, Gowda H, Chatterjee A.

Mitochondrion. 2018 May;40:58-70. doi: 10.1016/j.mito.2017.10.002. Epub 2017 Oct 16.

PMID:
29042306
31.

Chronic Cigarette Smoke Mediated Global Changes in Lung Mucoepidermoid Cells: A Phosphoproteomic Analysis.

Solanki HS, Advani J, Khan AA, Radhakrishnan A, Sahasrabuddhe NA, Pinto SM, Chang X, Prasad TSK, Mathur PP, Sidransky D, Gowda H, Chatterjee A.

OMICS. 2017 Aug;21(8):474-487. doi: 10.1089/omi.2017.0090.

32.

Proteomic Analysis of the Human Olfactory Bulb.

Dammalli M, Dey G, Madugundu AK, Kumar M, Rodrigues B, Gowda H, Siddaiah BG, Mahadevan A, Shankar SK, Prasad TSK.

OMICS. 2017 Aug;21(8):440-453. doi: 10.1089/omi.2017.0084.

PMID:
28816642
33.

Altered signaling associated with chronic arsenic exposure in human skin keratinocytes.

Mir SA, Renuse S, Sathe G, Khan AA, Patil AH, Nanjappa V, Bhat FA, Prasad TSK, Giri AK, Chatterjee A, Gowda H.

Proteomics Clin Appl. 2017 Dec;11(11-12). doi: 10.1002/prca.201700004. Epub 2017 Aug 15.

PMID:
28731282
34.

Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer.

Advani J, Subbannayya Y, Patel K, Khan AA, Patil AH, Jain AP, Solanki HS, Radhakrishnan A, Pinto SM, Sahasrabuddhe NA, Thomas JK, Mathur PP, Nair BG, Chang X, Prasad TSK, Sidransky D, Gowda H, Chatterjee A.

OMICS. 2017 Jul;21(7):390-403. doi: 10.1089/omi.2017.0045.

35.

Whole Genome Sequencing of Mycobacterium tuberculosis Isolates From Extrapulmonary Sites.

Sharma K, Verma R, Advani J, Chatterjee O, Solanki HS, Sharma A, Varma S, Modi M, Ray P, Mukherjee KK, Sharma M, Dhillion MS, Suar M, Chatterjee A, Pandey A, Prasad TSK, Gowda H.

OMICS. 2017 Jul;21(7):413-425. doi: 10.1089/omi.2017.0070.

PMID:
28692415
36.

PfCDPK1 mediated signaling in erythrocytic stages of Plasmodium falciparum.

Kumar S, Kumar M, Ekka R, Dvorin JD, Paul AS, Madugundu AK, Gilberger T, Gowda H, Duraisingh MT, Keshava Prasad TS, Sharma P.

Nat Commun. 2017 Jul 5;8(1):63. doi: 10.1038/s41467-017-00053-1.

37.

Corrigendum: A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma.

Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TSK, Santosh V, Sukumar G, Califano JA, Rangarajan A, Sidransky D, Pandey A, Gowda H, Chatterjee A.

Sci Rep. 2017 Jun 26;7:46864. doi: 10.1038/srep46864.

38.

Next-Generation Sequencing Reveals Novel Mutations in X-linked Intellectual Disability.

Muthusamy B, Selvan LDN, Nguyen TT, Manoj J, Stawiski EW, Jaiswal BS, Wang W, Raja R, Ramprasad VL, Gupta R, Murugan S, Kadandale JS, Prasad TSK, Reddy K, Peterson A, Pandey A, Seshagiri S, Girimaji SC, Gowda H.

OMICS. 2017 May;21(5):295-303. doi: 10.1089/omi.2017.0009.

39.

Data-Driven Discovery of Extravasation Pathway in Circulating Tumor Cells.

Yadavalli S, Jayaram S, Manda SS, Madugundu AK, Nayakanti DS, Tan TZ, Bhat R, Rangarajan A, Chatterjee A, Gowda H, Thiery JP, Kumar P.

Sci Rep. 2017 Mar 6;7:43710. doi: 10.1038/srep43710.

40.

Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis.

Verma R, Pinto SM, Patil AH, Advani J, Subba P, Kumar M, Sharma J, Dey G, Ravikumar R, Buggi S, Satishchandra P, Sharma K, Suar M, Tripathy SP, Chauhan DS, Gowda H, Pandey A, Gandotra S, Prasad TS.

J Proteome Res. 2017 Apr 7;16(4):1632-1645. doi: 10.1021/acs.jproteome.6b00983. Epub 2017 Mar 20.

PMID:
28241730
41.

Toward Postgenomics Ophthalmology: A Proteomic Map of the Human Choroid-Retinal Pigment Epithelium Tissue.

Dammalli M, Murthy KR, Pinto SM, Murthy KB, Nirujogi RS, Madugundu AK, Dey G, Nair B, Gowda H, Keshava Prasad TS.

OMICS. 2017 Feb;21(2):114-122. doi: 10.1089/omi.2016.0170.

PMID:
28186866
42.

Late-onset Neonatal Sepsis-A 10-year Review From North Queensland, Australia.

Gowda H, Norton R, White A, Kandasamy Y.

Pediatr Infect Dis J. 2017 Sep;36(9):883-888. doi: 10.1097/INF.0000000000001568.

PMID:
28178107
43.

Quantitative phosphoproteomic analysis reveals system-wide signaling pathways regulated by site-specific phosphorylation of Keratin-8 in skin squamous cell carcinoma derived cell line.

Tiwari R, Sahu I, Soni BL, Sathe GJ, Datta KK, Thapa P, Sinha S, Vadivel CK, Dhaka B, Gowda H, Vaidya MM.

Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201600254.

PMID:
28176443
44.

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.

Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A.

Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15.

45.

SILAC-based quantitative proteomic analysis reveals widespread molecular alterations in human skin keratinocytes upon chronic arsenic exposure.

Mir SA, Pinto SM, Paul S, Raja R, Nanjappa V, Syed N, Advani J, Renuse S, Sahasrabuddhe NA, Prasad TS, Giri AK, Gowda H, Chatterjee A.

Proteomics. 2017 Mar;17(6). doi: 10.1002/pmic.201600257. Epub 2016 Dec 21.

PMID:
28000977
46.

Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.

Patel K, Singh M, Gowda H.

Methods Mol Biol. 2017;1549:147-161.

PMID:
27975290
47.

How Does Chronic Cigarette Smoke Exposure Affect Human Skin? A Global Proteomics Study in Primary Human Keratinocytes.

Rajagopalan P, Nanjappa V, Raja R, Jain AP, Mangalaparthi KK, Sathe GJ, Babu N, Patel K, Cavusoglu N, Soeur J, Pandey A, Roy N, Breton L, Chatterjee A, Misra N, Gowda H.

OMICS. 2016 Nov;20(11):615-626.

PMID:
27828771
48.

Proteomic profiling of retinoblastoma by high resolution mass spectrometry.

Danda R, Ganapathy K, Sathe G, Madugundu AK, Ramachandran S, Krishnan UM, Khetan V, Rishi P, Keshava Prasad TS, Pandey A, Krishnakumar S, Gowda H, Elchuri SV.

Clin Proteomics. 2016 Oct 26;13:29. eCollection 2016.

49.

A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma.

Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TS, Santosh V, Sukumar G, Califano JA, Rangarajan A, Sidransky D, Pandey A, Gowda H, Chatterjee A.

Sci Rep. 2016 Oct 31;6:36132. doi: 10.1038/srep36132. Erratum in: Sci Rep. 2017 Jun 26;7:46864.

50.

Characterization of human pineal gland proteome.

Yelamanchi SD, Kumar M, Madugundu AK, Gopalakrishnan L, Dey G, Chavan S, Sathe G, Mathur PP, Gowda H, Mahadevan A, Shankar SK, Prasad TS.

Mol Biosyst. 2016 Nov 15;12(12):3622-3632.

PMID:
27714013

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