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Items: 1 to 50 of 251

1.

The A-allele of the FTO Gene rs9939609 Polymorphism Is Associated With Decreased Proportion of Slow Oxidative Muscle Fibers and Over-represented in Heavier Athletes.

Guilherme JPLF, Egorova ES, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Khabibova SA, Larin AK, Ospanova EA, Pavlenko AV, Lyubaeva EV, Popov DV, Lysenko EA, Vepkhvadze TF, Lednev EM, Govorun VM, Generozov EV, Ahmetov II, Lancha Junior AH.

J Strength Cond Res. 2019 Mar;33(3):691-700. doi: 10.1519/JSC.0000000000003032.

PMID:
30694969
2.

Peptidome profiling dataset of ovarian cancer and non-cancer proximal fluids: Ascites and blood sera.

Shender V, Arapidi G, Butenko I, Anikanov N, Ivanova O, Govorun V.

Data Brief. 2018 Dec 19;22:557-562. doi: 10.1016/j.dib.2018.12.056. eCollection 2019 Feb.

3.

Phytohormone treatment induces generation of cryptic peptides with antimicrobial activity in the Moss Physcomitrella patens.

Fesenko I, Azarkina R, Kirov I, Kniazev A, Filippova A, Grafskaia E, Lazarev V, Zgoda V, Butenko I, Bukato O, Lyapina I, Nazarenko D, Elansky S, Mamaeva A, Ivanov V, Govorun V.

BMC Plant Biol. 2019 Jan 7;19(1):9. doi: 10.1186/s12870-018-1611-z.

4.

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses.

Tyakht AV, Manolov AI, Kanygina AV, Ischenko DS, Kovarsky BA, Popenko AS, Pavlenko AV, Elizarova AV, Rakitina DV, Baikova JP, Ladygina VG, Kostryukova ES, Karpova IY, Semashko TA, Larin AK, Grigoryeva TV, Sinyagina MN, Malanin SY, Shcherbakov PL, Kharitonova AY, Khalif IL, Shapina MV, Maev IV, Andreev DN, Belousova EA, Buzunova YM, Alexeev DG, Govorun VM.

BMC Genomics. 2018 Dec 27;19(1):968. doi: 10.1186/s12864-018-5306-5.

5.

BAC-BROWSER: The Tool for Visualization and Analysis of Prokaryotic Genomes.

Garanina IA, Fisunov GY, Govorun VM.

Front Microbiol. 2018 Nov 21;9:2827. doi: 10.3389/fmicb.2018.02827. eCollection 2018.

6.

AGTR2 and sprint/power performance: a case-control replication study for rs11091046 polymorphism in two ethnicities.

Yvert TP, Zempo H, Gabdrakhmanova LJ, Kikuchi N, Miyamoto-Mikami E, Murakami H, Naito H, Cieszczyk P, Leznicka K, Kostryukova ES, Alexeev DG, Egorova ES, Maciejewska-Skrendo A, Larin AK, Generozov EV, Kulemin NA, Ospanova EA, Pavlenko AV, Sawczuk M, Zmijewski P, Lulinska-Kuklik E, Govorun VM, Miyachi M, Ahmetov II, Fuku N.

Biol Sport. 2018 Jun;35(2):105-109. doi: 10.5114/biolsport.2018.71599. Epub 2017 Nov 23.

7.

The Cyanotoxin BMAA Induces Heterocyst Specific Gene Expression in Anabaena sp. PCC 7120 under Repressive Conditions.

Popova AA, Semashko TA, Kostina NV, Rasmussen U, Govorun VM, Koksharova OA.

Toxins (Basel). 2018 Nov 16;10(11). pii: E478. doi: 10.3390/toxins10110478.

8.

Nucleotide Modifications Decrease Innate Immune Response Induced by Synthetic Analogs of snRNAs and snoRNAs.

Stepanov G, Zhuravlev E, Shender V, Nushtaeva A, Balakhonova E, Mozhaeva E, Kasakin M, Koval V, Lomzov A, Pavlyukov M, Malyants I, Zhorov M, Kabilova T, Chernolovskaya E, Govorun V, Kuligina E, Semenov D, Richter V.

Genes (Basel). 2018 Nov 2;9(11). pii: E531. doi: 10.3390/genes9110531.

9.

LogLoss-BERAF: An ensemble-based machine learning model for constructing highly accurate diagnostic sets of methylation sites accounting for heterogeneity in prostate cancer.

Babalyan K, Sultanov R, Generozov E, Sharova E, Kostryukova E, Larin A, Kanygina A, Govorun V, Arapidi G.

PLoS One. 2018 Nov 2;13(11):e0204371. doi: 10.1371/journal.pone.0204371. eCollection 2018.

10.

Protein encoded in human telomerase RNA is involved in cell protective pathways.

Rubtsova M, Naraykina Y, Vasilkova D, Meerson M, Zvereva M, Prassolov V, Lazarev V, Manuvera V, Kovalchuk S, Anikanov N, Butenko I, Pobeguts O, Govorun V, Dontsova O.

Nucleic Acids Res. 2018 Sep 28;46(17):8966-8977. doi: 10.1093/nar/gky705.

11.

ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages.

Rands CM, Starikova EV, Brüssow H, Kriventseva EV, Govorun VM, Zdobnov EM.

Environ Microbiol. 2018 Jun;20(6):2288-2300. doi: 10.1111/1462-2920.14276. Epub 2018 Aug 7.

PMID:
30014616
12.

Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains.

Bespyatykh J, Smolyakov A, Guliaev A, Shitikov E, Arapidi G, Butenko I, Dogonadze M, Manicheva O, Ilina E, Zgoda V, Govorun V.

J Proteomics. 2019 Feb 10;192:18-26. doi: 10.1016/j.jprot.2018.07.002. Epub 2018 Jul 24.

PMID:
30009986
13.

Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells.

Anufrieva KS, Shender VО, Arapidi GP, Pavlyukov MS, Shakhparonov MI, Shnaider PV, Butenko IO, Lagarkova MA, Govorun VM.

Genome Med. 2018 Jun 27;10(1):49. doi: 10.1186/s13073-018-0557-y.

14.

Apoptotic Cell-Derived Extracellular Vesicles Promote Malignancy of Glioblastoma Via Intercellular Transfer of Splicing Factors.

Pavlyukov MS, Yu H, Bastola S, Minata M, Shender VO, Lee Y, Zhang S, Wang J, Komarova S, Wang J, Yamaguchi S, Alsheikh HA, Shi J, Chen D, Mohyeldin A, Kim SH, Shin YJ, Anufrieva K, Evtushenko EG, Antipova NV, Arapidi GP, Govorun V, Pestov NB, Shakhparonov MI, Lee LJ, Nam DH, Nakano I.

Cancer Cell. 2018 Jul 9;34(1):119-135.e10. doi: 10.1016/j.ccell.2018.05.012. Epub 2018 Jun 21.

PMID:
29937354
15.

Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents.

Arapidi G, Osetrova M, Ivanova O, Butenko I, Saveleva T, Pavlovich P, Anikanov N, Ivanov V, Govorun V.

Data Brief. 2018 Apr 10;18:1204-1211. doi: 10.1016/j.dib.2018.04.018. eCollection 2018 Jun.

16.

Stress effects of cyanotoxin β-methylamino-L-alanine (BMAA) on cyanobacterial heterocyst formation and functionality.

Popova AA, Rasmussen U, Semashko TA, Govorun VM, Koksharova OA.

Environ Microbiol Rep. 2018 Jun;10(3):369-377. doi: 10.1111/1758-2229.12647. Epub 2018 May 6.

PMID:
29624906
17.

Data-independent proteome profile of Mycoplasma gallisepticum under normal conditions and heat stress.

Butenko I, Pobeguts O, Matyushkina D, Kovalchuk S, Anikanov N, Fisunov G, Govorun V.

Data Brief. 2017 Dec 7;16:700-704. doi: 10.1016/j.dib.2017.11.093. eCollection 2018 Feb.

18.

Analysis of Endogenous Peptide Pools of Physcomitrella patens Moss.

Fesenko I, Khazigaleeva R, Govorun V, Ivanov V.

Methods Mol Biol. 2018;1719:395-405. doi: 10.1007/978-1-4939-7537-2_27.

PMID:
29476527
19.

[Bioinformatics analysis of antimicrobial resistance genes and prophages colocalized in human gut metagenomes].

Starikova EV, Prianichnikov NA, Zdobnov E, Govorun VM.

Biomed Khim. 2017 Nov;63(6):508-512. doi: 10.18097/PBMC20176306508. Russian.

PMID:
29251611
20.

Inhibitory effect of streptococci on the growth of M. catarrhalis strains and the diversity of putative bacteriocin-like gene loci in the genomes of S. pneumoniae and its relatives.

Ikryannikova LN, Malakhova MV, Lominadze GG, Karpova IY, Kostryukova ES, Mayansky NA, Kruglov AN, Klimova EA, Lisitsina ES, Ilina EN, Govorun VM.

AMB Express. 2017 Dec 13;7(1):218. doi: 10.1186/s13568-017-0521-z.

21.

Identification of unusual peptides with new Cys frameworks in the venom of the cold-water sea anemone Cnidopus japonicus.

Babenko VV, Mikov AN, Manuvera VA, Anikanov NA, Kovalchuk SI, Andreev YA, Logashina YA, Kornilov DA, Manolov AI, Sanamyan NP, Sanamyan KE, Kostryukova ES, Kozlov SA, Grishin EV, Govorun VM, Lazarev VN.

Sci Rep. 2017 Nov 6;7(1):14534. doi: 10.1038/s41598-017-14961-1.

22.

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease.

Dubinkina VB, Tyakht AV, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitsky EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Microbiome. 2017 Oct 17;5(1):141. doi: 10.1186/s40168-017-0359-2.

23.

Response induced in Mycoplasma gallisepticum under heat shock might be relevant to infection process.

Butenko I, Vanyushkina A, Pobeguts O, Matyushkina D, Kovalchuk S, Gorbachev A, Anikanov N, Fisunov G, Govorun V.

Sci Rep. 2017 Sep 12;7(1):11330. doi: 10.1038/s41598-017-09237-7.

24.

Evolutionary pathway analysis and unified classification of East Asian lineage of Mycobacterium tuberculosis.

Shitikov E, Kolchenko S, Mokrousov I, Bespyatykh J, Ischenko D, Ilina E, Govorun V.

Sci Rep. 2017 Aug 23;7(1):9227. doi: 10.1038/s41598-017-10018-5.

25.

Exposure to the Epstein-Barr Viral Antigen Latent Membrane Protein 1 Induces Myelin-Reactive Antibodies In Vivo.

Lomakin Y, Arapidi GP, Chernov A, Ziganshin R, Tcyganov E, Lyadova I, Butenko IO, Osetrova M, Ponomarenko N, Telegin G, Govorun VM, Gabibov A, Belogurov A Jr.

Front Immunol. 2017 Jul 6;8:777. doi: 10.3389/fimmu.2017.00777. eCollection 2017.

26.

Genome analysis of E. coli isolated from Crohn's disease patients.

Rakitina DV, Manolov AI, Kanygina AV, Garushyants SK, Baikova JP, Alexeev DG, Ladygina VG, Kostryukova ES, Larin AK, Semashko TA, Karpova IY, Babenko VV, Ismagilova RK, Malanin SY, Gelfand MS, Ilina EN, Gorodnichev RB, Lisitsyna ES, Aleshkin GI, Scherbakov PL, Khalif IL, Shapina MV, Maev IV, Andreev DN, Govorun VM.

BMC Genomics. 2017 Jul 19;18(1):544. doi: 10.1186/s12864-017-3917-x.

27.

Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin.

Gavrilov S, Podosokorskaya O, Alexeev D, Merkel A, Khomyakova M, Muntyan M, Altukhov I, Butenko I, Bonch-Osmolovskaya E, Govorun V, Kublanov I.

Front Microbiol. 2017 Jun 30;8:1228. doi: 10.3389/fmicb.2017.01228. eCollection 2017.

28.

Outer membrane vesicles secreted by pathogenic and nonpathogenic Bacteroides fragilis represent different metabolic activities.

Zakharzhevskaya NB, Vanyushkina AA, Altukhov IA, Shavarda AL, Butenko IO, Rakitina DV, Nikitina AS, Manolov AI, Egorova AN, Kulikov EE, Vishnyakov IE, Fisunov GY, Govorun VM.

Sci Rep. 2017 Jul 10;7(1):5008. doi: 10.1038/s41598-017-05264-6.

29.

Corrigendum: Interaction of Bacteroides fragilis Toxin with Outer Membrane Vesicles Reveals New Mechanism of Its Secretion and Delivery.

Zakharzhevskaya NB, Tsvetkov VB, Vanyushkina AA, Varizhuk AM, Rakitina DV, Podgorsky VV, Vishnyakov IE, Kharlampieva DD, Manuvera VA, Lisitsyn FV, Gushina EA, Lazarev VN, Govorun VM.

Front Cell Infect Microbiol. 2017 Jun 30;7:308. doi: 10.3389/fcimb.2017.00308. eCollection 2017.

30.

Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.

Fesenko I, Khazigaleeva R, Kirov I, Kniazev A, Glushenko O, Babalyan K, Arapidi G, Shashkova T, Butenko I, Zgoda V, Anufrieva K, Seredina A, Filippova A, Govorun V.

Sci Rep. 2017 Jun 2;7(1):2698. doi: 10.1038/s41598-017-02970-z.

31.

Analysis of Gut Microbiota in Patients with Parkinson's Disease.

Petrov VA, Saltykova IV, Zhukova IA, Alifirova VM, Zhukova NG, Dorofeeva YB, Tyakht AV, Kovarsky BA, Alekseev DG, Kostryukova ES, Mironova YS, Izhboldina OP, Nikitina MA, Perevozchikova TV, Fait EA, Babenko VV, Vakhitova MT, Govorun VM, Sazonov AE.

Bull Exp Biol Med. 2017 Apr;162(6):734-737. doi: 10.1007/s10517-017-3700-7. Epub 2017 Apr 20.

PMID:
28429209
32.

Interaction of Bacteroides fragilis Toxin with Outer Membrane Vesicles Reveals New Mechanism of Its Secretion and Delivery.

Zakharzhevskaya NB, Tsvetkov VB, Vanyushkina AA, Varizhuk AM, Rakitina DV, Podgorsky VV, Vishnyakov IE, Kharlampieva DD, Manuvera VA, Lisitsyn FV, Gushina EA, Lazarev VN, Govorun VM.

Front Cell Infect Microbiol. 2017 Jan 17;7:2. doi: 10.3389/fcimb.2017.00002. eCollection 2017. Erratum in: Front Cell Infect Microbiol. 2017 Jun 30;7:308.

33.

Binding site of restriction-modification system controller protein in Mollicutes.

Fisunov GY, Evsyutina DV, Manuvera VA, Govorun VM.

BMC Microbiol. 2017 Jan 31;17(1):26. doi: 10.1186/s12866-017-0935-4.

34.

Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis.

Tyakht AV, Dubinkina VB, Odintsova VY, Yarygin KS, Kovarsky BA, Pavlenko AV, Ischenko DS, Popenko AS, Alexeev DG, Taraskina AY, Nasyrova RF, Krupitski EM, Shalikiani NV, Bakulin IG, Shcherbakov PL, Skorodumova LO, Larin AK, Kostryukova ES, Abdulkhakov RA, Abdulkhakov SR, Malanin SY, Ismagilova RK, Grigoryeva TV, Ilina EN, Govorun VM.

Data Brief. 2017 Jan 17;11:98-102. doi: 10.1016/j.dib.2017.01.008. eCollection 2017 Apr.

35.

Data on gut metagenomes of the patients with Helicobacter pylori infection before and after the antibiotic therapy.

Glushchenko OE, Samoilov AE, Olekhnovich EI, Kovarsky BA, Tyakht AV, Pavlenko AV, Babenko VV, Larin AK, Kostryukova ES, Malakhova MV, Ilina EN, Abdulkhakov RA, Safina DI, Grigoryeva TV, Abdulkhakov SR, Govorun VM.

Data Brief. 2017 Jan 17;11:68-71. doi: 10.1016/j.dib.2017.01.007. eCollection 2017 Apr.

36.

Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants.

Sultanov RI, Arapidi GP, Vinogradova SV, Govorun VM, Luster DG, Ignatov AN.

BMC Genomics. 2016 Dec 28;17(Suppl 14):1010. doi: 10.1186/s12864-016-3358-y.

37.

Data on genome analysis of Mycoplasmagallisepticum during intracellular infection.

Matyushkina D, Pobeguts O, Garanina I, Babenko V, Vakhitova M, Fisunov G, Govorun V.

Data Brief. 2016 Dec 8;10:264-268. doi: 10.1016/j.dib.2016.12.006. eCollection 2017 Feb.

38.

Reconstruction of Transcription Control Networks in Mollicutes by High-Throughput Identification of Promoters.

Fisunov GY, Garanina IA, Evsyutina DV, Semashko TA, Nikitina AS, Govorun VM.

Front Microbiol. 2016 Dec 6;7:1977. doi: 10.3389/fmicb.2016.01977. eCollection 2016.

39.

Ribosome profiling reveals an adaptation strategy of reduced bacterium to acute stress.

Fisunov GY, Evsyutina DV, Garanina IA, Arzamasov AA, Butenko IO, Altukhov IA, Nikitina AS, Govorun VM.

Biochimie. 2017 Jan;132:66-74. doi: 10.1016/j.biochi.2016.10.015. Epub 2016 Oct 27.

40.

Transcription profiling data set of different states of Mycoplasma gallisepticum.

Semashko TA, Arzamasov AA, Fisunov GY, Govorun VM.

Genom Data. 2016 Nov 29;11:49-54. eCollection 2017 Mar.

41.

Mediators and Biomarkers of Inflammation in Meningitis: Cytokine and Peptidome Profiling of Cerebrospinal Fluid.

Belogurov AA Jr, Ivanova OM, Lomakin YA, Ziganshin RH, Vaskina MI, Knorre VD, Klimova EA, Gabibov AG, Ivanov VT, Govorun VM.

Biochemistry (Mosc). 2016 Nov;81(11):1293-1302.

42.

Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli.

Evfratov SA, Osterman IA, Komarova ES, Pogorelskaya AM, Rubtsova MP, Zatsepin TS, Semashko TA, Kostryukova ES, Mironov AA, Burnaev E, Krymova E, Gelfand MS, Govorun VM, Bogdanov AA, Sergiev PV, Dontsova OA.

Nucleic Acids Res. 2017 Apr 7;45(6):3487-3502. doi: 10.1093/nar/gkw1141.

43.

The Physcomitrella patens Chloroplast Proteome Changes in Response to Protoplastation.

Fesenko I, Seredina A, Arapidi G, Ptushenko V, Urban A, Butenko I, Kovalchuk S, Babalyan K, Knyazev A, Khazigaleeva R, Pushkova E, Anikanov N, Ivanov V, Govorun VM.

Front Plant Sci. 2016 Nov 4;7:1661. eCollection 2016.

44.

Large scale analysis of amino acid substitutions in bacterial proteomics.

Ischenko D, Alexeev D, Shitikov E, Kanygina A, Malakhova M, Kostryukova E, Larin A, Kovalchuk S, Pobeguts O, Butenko I, Anikanov N, Altukhov I, Ilina E, Govorun V.

BMC Bioinformatics. 2016 Nov 8;17(1):450.

45.

State of the Art of Chromosome 18-Centric HPP in 2016: Transcriptome and Proteome Profiling of Liver Tissue and HepG2 Cells.

Poverennaya EV, Kopylov AT, Ponomarenko EA, Ilgisonis EV, Zgoda VG, Tikhonova OV, Novikova SE, Farafonova TE, Kiseleva YY, Radko SP, Vakhrushev IV, Yarygin KN, Moshkovskii SA, Kiseleva OI, Lisitsa AV, Sokolov AS, Mazur AM, Prokhortchouk EB, Skryabin KG, Kostrjukova ES, Tyakht AV, Gorbachev AY, Ilina EN, Govorun VM, Archakov AI.

J Proteome Res. 2016 Nov 4;15(11):4030-4038. Epub 2016 Aug 29.

PMID:
27527821
46.

Phase Transition of the Bacterium upon Invasion of a Host Cell as a Mechanism of Adaptation: a Mycoplasma gallisepticum Model.

Matyushkina D, Pobeguts O, Butenko I, Vanyushkina A, Anikanov N, Bukato O, Evsyutina D, Bogomazova A, Lagarkova M, Semashko T, Garanina I, Babenko V, Vakhitova M, Ladygina V, Fisunov G, Govorun V.

Sci Rep. 2016 Oct 24;6:35959. doi: 10.1038/srep35959.

47.

Data on translatome analysis of Mycoplasma gallisepticum.

Fisunov GY, Evsyutina DV, Govorun VM.

Data Brief. 2016 Sep 7;9:422-424. eCollection 2016 Dec.

48.

Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster.

Bespyatykh J, Shitikov E, Butenko I, Altukhov I, Alexeev D, Mokrousov I, Dogonadze M, Zhuravlev V, Yablonsky P, Ilina E, Govorun V.

Sci Rep. 2016 Jun 30;6:28985. doi: 10.1038/srep28985.

49.

Recombinant Human Peptidoglycan Recognition Proteins Reveal Antichlamydial Activity.

Bobrovsky P, Manuvera V, Polina N, Podgorny O, Prusakov K, Govorun V, Lazarev V.

Infect Immun. 2016 Jun 23;84(7):2124-2130. doi: 10.1128/IAI.01495-15. Print 2016 Jul.

50.

The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids.

Ziganshin RH, Ivanova OM, Lomakin YA, Belogurov AA Jr, Kovalchuk SI, Azarkin IV, Arapidi GP, Anikanov NA, Shender VO, Piradov MA, Suponeva NA, Vorobyeva AA, Gabibov AG, Ivanov VT, Govorun VM.

Mol Cell Proteomics. 2016 Jul;15(7):2366-78. doi: 10.1074/mcp.M115.056036. Epub 2016 May 3.

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