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Items: 1 to 50 of 104

1.

Novel Multiphase Assessment for Predicting Left Ventricular Outflow Tract Obstruction Before Transcatheter Mitral Valve Replacement.

Meduri CU, Reardon MJ, Lim DS, Howard E, Dunnington G, Lee DP, Liang D, Gooley R, O'Hair D, Ng MK, Walton A, Spargias K, Blackman D, Coisne A, Hildick-Smith D, De Gouy M, Chenoweth S, Kar S, McCarthy PM, Piazza N, Qasam A, Martin RP, Leon MB, Mack MJ, Adams DH, Bapat V.

JACC Cardiovasc Interv. 2019 Dec 9;12(23):2402-2412. doi: 10.1016/j.jcin.2019.06.015. Epub 2019 Oct 16.

PMID:
31629753

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2.

Extreme halophilic archaea derive from two distinct methanogen Class II lineages.

Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.

Mol Phylogenet Evol. 2018 Oct;127:46-54. doi: 10.1016/j.ympev.2018.04.011. Epub 2018 Apr 21.

PMID:
29684598

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3.

RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.

Mol Biol Evol. 2016 Aug;33(8):2170-2. doi: 10.1093/molbev/msw088. Epub 2016 May 5.

PMID:
27189556

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4.

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.

Groussin M, Boussau B, Szöllõsi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V.

Mol Biol Evol. 2016 Feb;33(2):305-10. doi: 10.1093/molbev/msv249. Epub 2015 Nov 4.

PMID:
26541173
Free PMC Article

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5.

leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.

Flandrois JP, Perrière G, Gouy M.

BMC Bioinformatics. 2015 Aug 12;16:251. doi: 10.1186/s12859-015-0692-z.

PMID:
26264559
Free PMC Article

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6.

Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

Groussin M, Hobbs JK, Szöllősi GJ, Gribaldo S, Arcus VL, Gouy M.

Mol Biol Evol. 2015 Jan;32(1):13-22. doi: 10.1093/molbev/msu305. Epub 2014 Nov 4.

PMID:
25371435
Free PMC Article

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7.

Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes.

Rochette NC, Brochier-Armanet C, Gouy M.

Mol Biol Evol. 2014 Apr;31(4):832-45. doi: 10.1093/molbev/mst272. Epub 2014 Jan 7.

PMID:
24398320
Free PMC Article

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8.

The molecular signal for the adaptation to cold temperature during early life on Earth.

Groussin M, Boussau B, Charles S, Blanquart S, Gouy M.

Biol Lett. 2013 Oct 23;9(5):20130608.

PMID:
24046876
Free PMC Article

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9.

Experimental assessment of the accuracy of genomic selection in sugarcane.

Gouy M, Rousselle Y, Bastianelli D, Lecomte P, Bonnal L, Roques D, Efile JC, Rocher S, Daugrois J, Toubi L, Nabeneza S, Hervouet C, Telismart H, Denis M, Thong-Chane A, Glaszmann JC, Hoarau JY, Nibouche S, Costet L.

Theor Appl Genet. 2013 Oct;126(10):2575-86. doi: 10.1007/s00122-013-2156-z. Epub 2013 Aug 2.

PMID:
23907359

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10.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

PMID:
23699471

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11.

A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences.

Groussin M, Boussau B, Gouy M.

Syst Biol. 2013 Jul;62(4):523-38. doi: 10.1093/sysbio/syt016. Epub 2013 Mar 7.

PMID:
23475623
Free PMC Article

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12.

Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.

PMID:
23132911
Free PMC Article

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13.

Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant.

Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, Frary A, Dintinger J.

Theor Appl Genet. 2013 Jan;126(1):143-58. doi: 10.1007/s00122-012-1969-5. Epub 2012 Aug 29.

PMID:
22930132

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14.

Lateral gene transfer as a support for the tree of life.

Abby SS, Tannier E, Gouy M, Daubin V.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4962-7. doi: 10.1073/pnas.1116871109. Epub 2012 Mar 13.

PMID:
22416123
Free PMC Article

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15.

Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea.

Groussin M, Gouy M.

Mol Biol Evol. 2011 Sep;28(9):2661-74. doi: 10.1093/molbev/msr098. Epub 2011 Apr 15.

PMID:
21498602

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16.

Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Bergeron M, Dauwalder O, Gouy M, Freydiere AM, Bes M, Meugnier H, Benito Y, Etienne J, Lina G, Vandenesch F, Boisset S.

Eur J Clin Microbiol Infect Dis. 2011 Mar;30(3):343-54. doi: 10.1007/s10096-010-1091-z. Epub 2010 Oct 22.

PMID:
20967479
Free Article

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17.

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.

Abby SS, Tannier E, Gouy M, Daubin V.

BMC Bioinformatics. 2010 Jun 15;11:324. doi: 10.1186/1471-2105-11-324.

PMID:
20550700
Free PMC Article

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18.

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

Gouy M, Guindon S, Gascuel O.

Mol Biol Evol. 2010 Feb;27(2):221-4. doi: 10.1093/molbev/msp259. Epub 2009 Oct 23.

PMID:
19854763

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19.

A mixture model and a hidden markov model to simultaneously detect recombination breakpoints and reconstruct phylogenies.

Boussau B, Guéguen L, Gouy M.

Evol Bioinform Online. 2009 Jun 25;5:67-79.

PMID:
19812727
Free PMC Article

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20.

Special feature of mixed phosphotriester derivatives of cytarabine.

Gouy MH, Jordheim LP, Lefebvre I, Cros E, Dumontet C, Peyrottes S, Périgaud C.

Bioorg Med Chem. 2009 Sep 1;17(17):6340-7. doi: 10.1016/j.bmc.2009.07.038. Epub 2009 Jul 23.

PMID:
19674903

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21.

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3. doi: 10.1186/1471-2105-10-S6-S3.

PMID:
19534752
Free PMC Article

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22.

Parallel adaptations to high temperatures in the Archaean eon.

Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M.

Nature. 2008 Dec 18;456(7224):942-5. doi: 10.1038/nature07393. Epub 2008 Nov 26.

PMID:
19037246

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23.

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria.

Boussau B, Guéguen L, Gouy M.

BMC Evol Biol. 2008 Oct 3;8:272. doi: 10.1186/1471-2148-8-272.

PMID:
18834516
Free PMC Article

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24.

Polymorphism of the Staphylococcus aureus Panton-Valentine leukocidin genes and its possible link with the fitness of community-associated methicillin-resistant S. aureus.

Dumitrescu O, Tristan A, Meugnier H, Bes M, Gouy M, Etienne J, Lina G, Vandenesch F.

J Infect Dis. 2008 Sep 1;198(5):792-4. doi: 10.1086/590914. No abstract available.

PMID:
18694339

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25.

Evolutionary biology: ancient bacteria liked it hot.

Gouy M, Chaussidon M.

Nature. 2008 Feb 7;451(7179):635-6. doi: 10.1038/451635a. No abstract available.

PMID:
18256650

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26.

Automatic identification of large collections of protein-coding or rRNA sequences.

Arigon AM, Perrière G, Gouy M.

Biochimie. 2008 Apr;90(4):609-14. Epub 2007 Sep 2.

PMID:
17920750

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27.

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

Gouy M, Delmotte S.

Biochimie. 2008 Apr;90(4):555-62. Epub 2007 Jul 15.

PMID:
17825976

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28.

Preparation of 6,6,1',1',6',6'-hexadeutero sucrose.

Gouy MH, Danel M, Gayral M, Bouchu A, Queneau Y.

Carbohydr Res. 2007 Nov 5;342(15):2303-8. Epub 2007 Jun 30.

PMID:
17640626

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29.

Efficient likelihood computations with nonreversible models of evolution.

Boussau B, Gouy M.

Syst Biol. 2006 Oct;55(5):756-68.

PMID:
17060197

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30.

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments.

Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J.

Mol Ecol. 2006 Jun;15(7):1797-806.

PMID:
16689899

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31.

HoSeqI: automated homologous sequence identification in gene family databases.

Arigon AM, Perrière G, Gouy M.

Bioinformatics. 2006 Jul 15;22(14):1786-7. Epub 2006 May 8.

PMID:
16682422

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32.

Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation.

Lefébure T, Douady CJ, Gouy M, Gibert J.

Mol Phylogenet Evol. 2006 Aug;40(2):435-47. Epub 2006 May 2.

PMID:
16647275

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33.

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Grassot J, Gouy M, Perrière G, Mouchiroud G.

Mol Biol Evol. 2006 Jun;23(6):1232-41. Epub 2006 Mar 21.

PMID:
16551648

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34.

Synthetic approaches to a mononucleotide prodrug of cytarabine.

Bazzanini R, Gouy MH, Peyrottes S, Gosselin G, Périgaud C, Manfredini S.

Nucleosides Nucleotides Nucleic Acids. 2005;24(10-12):1635-49.

PMID:
16438040

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35.

Phylogenomics of life-or-death switches in multicellular animals: Bcl-2, BH3-Only, and BNip families of apoptotic regulators.

Aouacheria A, Brunet F, Gouy M.

Mol Biol Evol. 2005 Dec;22(12):2395-416. Epub 2005 Aug 10.

PMID:
16093567

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36.

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

Calteau A, Gouy M, Perrière G.

J Mol Evol. 2005 May;60(5):557-65.

PMID:
15983865

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37.

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M.

Oncogene. 2005 Sep 8;24(40):6133-42.

PMID:
15897869

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38.

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G.

Bioinformatics. 2005 Jun 1;21(11):2596-603. Epub 2005 Feb 15.

PMID:
15713731

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39.

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity.

Huguet V, Gouy M, Normand P, Zimpfer JF, Fernandez MP.

Mol Phylogenet Evol. 2005 Mar;34(3):557-68. Epub 2005 Jan 7.

PMID:
15683929

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40.

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes.

Aurell H, Farge P, Meugnier H, Gouy M, Forey F, Lina G, Vandenesch F, Etienne J, Jarraud S.

Appl Environ Microbiol. 2005 Jan;71(1):282-9.

PMID:
15640199
Free PMC Article

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41.

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes.

Thomarat F, Vivarès CP, Gouy M.

J Mol Evol. 2004 Dec;59(6):780-91.

PMID:
15599510

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42.

Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model.

Aouacheria A, Cluzel C, Lethias C, Gouy M, Garrone R, Exposito JY.

J Biol Chem. 2004 Nov 12;279(46):47711-9. Epub 2004 Sep 8.

PMID:
15358765
Free Article

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43.

Characterization of a gemcitabine-resistant murine leukemic cell line: reversion of in vitro resistance by a mononucleotide prodrug.

Jordheim LP, Cros E, Gouy MH, Galmarini CM, Peyrottes S, Mackey J, Perigaud C, Dumontet C.

Clin Cancer Res. 2004 Aug 15;10(16):5614-21.

PMID:
15328204
Free Article

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44.

Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences.

Le Roux F, Gay M, Lambert C, Nicolas JL, Gouy M, Berthe F.

Dis Aquat Organ. 2004 Mar 10;58(2-3):143-50.

PMID:
15109135
Free Article

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45.

Integrated databanks access and sequence/structure analysis services at the PBIL.

Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G.

Nucleic Acids Res. 2003 Jul 1;31(13):3393-9.

PMID:
12824334
Free PMC Article

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46.

Functional and evolutionary analysis of a eukaryotic parasitic genome.

Vivarès CP, Gouy M, Thomarat F, Méténier G.

Curr Opin Microbiol. 2002 Oct;5(5):499-505. Review.

PMID:
12354558

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47.

Automatic RNA secondary structure prediction with a comparative approach.

Tahi F, Gouy M, Régnier M.

Comput Chem. 2002 Jul;26(5):521-30.

PMID:
12144180

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48.

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.

Daubin V, Gouy M, Perrière G.

Genome Res. 2002 Jul;12(7):1080-90.

PMID:
12097345
Free PMC Article

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49.

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome.

Rizzon C, Marais G, Gouy M, Biémont C.

Genome Res. 2002 Mar;12(3):400-7.

PMID:
11875027
Free PMC Article

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50.

Bacterial molecular phylogeny using supertree approach.

Daubin V, Gouy M, Perrière G.

Genome Inform. 2001;12:155-64.

PMID:
11791234

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