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Items: 1 to 50 of 104

1.

Novel Multiphase Assessment for Predicting Left Ventricular Outflow Tract Obstruction Before Transcatheter Mitral Valve Replacement.

Meduri CU, Reardon MJ, Lim DS, Howard E, Dunnington G, Lee DP, Liang D, Gooley R, O'Hair D, Ng MK, Walton A, Spargias K, Blackman D, Coisne A, Hildick-Smith D, De Gouy M, Chenoweth S, Kar S, McCarthy PM, Piazza N, Qasam A, Martin RP, Leon MB, Mack MJ, Adams DH, Bapat V.

JACC Cardiovasc Interv. 2019 Dec 9;12(23):2402-2412. doi: 10.1016/j.jcin.2019.06.015. Epub 2019 Oct 16.

PMID:
31629753
2.

Extreme halophilic archaea derive from two distinct methanogen Class II lineages.

Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.

Mol Phylogenet Evol. 2018 Oct;127:46-54. doi: 10.1016/j.ympev.2018.04.011. Epub 2018 Apr 21.

PMID:
29684598
3.

RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.

Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.

Mol Biol Evol. 2016 Aug;33(8):2170-2. doi: 10.1093/molbev/msw088. Epub 2016 May 5.

PMID:
27189556
4.

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated.

Groussin M, Boussau B, Szöllõsi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V.

Mol Biol Evol. 2016 Feb;33(2):305-10. doi: 10.1093/molbev/msv249. Epub 2015 Nov 4.

5.

leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences.

Flandrois JP, Perrière G, Gouy M.

BMC Bioinformatics. 2015 Aug 12;16:251. doi: 10.1186/s12859-015-0692-z.

6.

Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.

Groussin M, Hobbs JK, Szöllősi GJ, Gribaldo S, Arcus VL, Gouy M.

Mol Biol Evol. 2015 Jan;32(1):13-22. doi: 10.1093/molbev/msu305. Epub 2014 Nov 4.

7.

Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes.

Rochette NC, Brochier-Armanet C, Gouy M.

Mol Biol Evol. 2014 Apr;31(4):832-45. doi: 10.1093/molbev/mst272. Epub 2014 Jan 7.

8.

The molecular signal for the adaptation to cold temperature during early life on Earth.

Groussin M, Boussau B, Charles S, Blanquart S, Gouy M.

Biol Lett. 2013 Oct 23;9(5):20130608.

9.

Experimental assessment of the accuracy of genomic selection in sugarcane.

Gouy M, Rousselle Y, Bastianelli D, Lecomte P, Bonnal L, Roques D, Efile JC, Rocher S, Daugrois J, Toubi L, Nabeneza S, Hervouet C, Telismart H, Denis M, Thong-Chane A, Glaszmann JC, Hoarau JY, Nibouche S, Costet L.

Theor Appl Genet. 2013 Oct;126(10):2575-86. doi: 10.1007/s00122-013-2156-z. Epub 2013 Aug 2.

PMID:
23907359
10.

Bio++: efficient extensible libraries and tools for computational molecular evolution.

Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY.

Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21.

PMID:
23699471
11.

A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences.

Groussin M, Boussau B, Gouy M.

Syst Biol. 2013 Jul;62(4):523-38. doi: 10.1093/sysbio/syt016. Epub 2013 Mar 7.

12.

Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.

13.

Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant.

Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, Frary A, Dintinger J.

Theor Appl Genet. 2013 Jan;126(1):143-58. doi: 10.1007/s00122-012-1969-5. Epub 2012 Aug 29.

PMID:
22930132
14.

Lateral gene transfer as a support for the tree of life.

Abby SS, Tannier E, Gouy M, Daubin V.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4962-7. doi: 10.1073/pnas.1116871109. Epub 2012 Mar 13.

15.

Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea.

Groussin M, Gouy M.

Mol Biol Evol. 2011 Sep;28(9):2661-74. doi: 10.1093/molbev/msr098. Epub 2011 Apr 15.

PMID:
21498602
16.

Species identification of staphylococci by amplification and sequencing of the tuf gene compared to the gap gene and by matrix-assisted laser desorption ionization time-of-flight mass spectrometry.

Bergeron M, Dauwalder O, Gouy M, Freydiere AM, Bes M, Meugnier H, Benito Y, Etienne J, Lina G, Vandenesch F, Boisset S.

Eur J Clin Microbiol Infect Dis. 2011 Mar;30(3):343-54. doi: 10.1007/s10096-010-1091-z. Epub 2010 Oct 22.

17.

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.

Abby SS, Tannier E, Gouy M, Daubin V.

BMC Bioinformatics. 2010 Jun 15;11:324. doi: 10.1186/1471-2105-11-324.

18.

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

Gouy M, Guindon S, Gascuel O.

Mol Biol Evol. 2010 Feb;27(2):221-4. doi: 10.1093/molbev/msp259. Epub 2009 Oct 23.

PMID:
19854763
19.
20.

Special feature of mixed phosphotriester derivatives of cytarabine.

Gouy MH, Jordheim LP, Lefebvre I, Cros E, Dumontet C, Peyrottes S, Périgaud C.

Bioorg Med Chem. 2009 Sep 1;17(17):6340-7. doi: 10.1016/j.bmc.2009.07.038. Epub 2009 Jul 23.

PMID:
19674903
21.

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3. doi: 10.1186/1471-2105-10-S6-S3.

22.

Parallel adaptations to high temperatures in the Archaean eon.

Boussau B, Blanquart S, Necsulea A, Lartillot N, Gouy M.

Nature. 2008 Dec 18;456(7224):942-5. doi: 10.1038/nature07393. Epub 2008 Nov 26.

PMID:
19037246
23.
24.

Polymorphism of the Staphylococcus aureus Panton-Valentine leukocidin genes and its possible link with the fitness of community-associated methicillin-resistant S. aureus.

Dumitrescu O, Tristan A, Meugnier H, Bes M, Gouy M, Etienne J, Lina G, Vandenesch F.

J Infect Dis. 2008 Sep 1;198(5):792-4. doi: 10.1086/590914. No abstract available.

PMID:
18694339
25.

Evolutionary biology: ancient bacteria liked it hot.

Gouy M, Chaussidon M.

Nature. 2008 Feb 7;451(7179):635-6. doi: 10.1038/451635a. No abstract available.

PMID:
18256650
26.

Automatic identification of large collections of protein-coding or rRNA sequences.

Arigon AM, Perrière G, Gouy M.

Biochimie. 2008 Apr;90(4):609-14. Epub 2007 Sep 2.

PMID:
17920750
27.

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

Gouy M, Delmotte S.

Biochimie. 2008 Apr;90(4):555-62. Epub 2007 Jul 15.

PMID:
17825976
28.

Preparation of 6,6,1',1',6',6'-hexadeutero sucrose.

Gouy MH, Danel M, Gayral M, Bouchu A, Queneau Y.

Carbohydr Res. 2007 Nov 5;342(15):2303-8. Epub 2007 Jun 30.

PMID:
17640626
29.

Efficient likelihood computations with nonreversible models of evolution.

Boussau B, Gouy M.

Syst Biol. 2006 Oct;55(5):756-68.

PMID:
17060197
30.

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments.

Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, Gibert J.

Mol Ecol. 2006 Jun;15(7):1797-806.

PMID:
16689899
31.

HoSeqI: automated homologous sequence identification in gene family databases.

Arigon AM, Perrière G, Gouy M.

Bioinformatics. 2006 Jul 15;22(14):1786-7. Epub 2006 May 8.

PMID:
16682422
32.

Relationship between morphological taxonomy and molecular divergence within Crustacea: proposal of a molecular threshold to help species delimitation.

Lefébure T, Douady CJ, Gouy M, Gibert J.

Mol Phylogenet Evol. 2006 Aug;40(2):435-47. Epub 2006 May 2.

PMID:
16647275
33.

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Grassot J, Gouy M, Perrière G, Mouchiroud G.

Mol Biol Evol. 2006 Jun;23(6):1232-41. Epub 2006 Mar 21.

PMID:
16551648
34.

Synthetic approaches to a mononucleotide prodrug of cytarabine.

Bazzanini R, Gouy MH, Peyrottes S, Gosselin G, Périgaud C, Manfredini S.

Nucleosides Nucleotides Nucleic Acids. 2005;24(10-12):1635-49.

PMID:
16438040
35.

Phylogenomics of life-or-death switches in multicellular animals: Bcl-2, BH3-Only, and BNip families of apoptotic regulators.

Aouacheria A, Brunet F, Gouy M.

Mol Biol Evol. 2005 Dec;22(12):2395-416. Epub 2005 Aug 10.

PMID:
16093567
36.

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

Calteau A, Gouy M, Perrière G.

J Mol Evol. 2005 May;60(5):557-65.

PMID:
15983865
37.

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant.

Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M.

Oncogene. 2005 Sep 8;24(40):6133-42.

PMID:
15897869
38.

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G.

Bioinformatics. 2005 Jun 1;21(11):2596-603. Epub 2005 Feb 15.

PMID:
15713731
39.

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity.

Huguet V, Gouy M, Normand P, Zimpfer JF, Fernandez MP.

Mol Phylogenet Evol. 2005 Mar;34(3):557-68. Epub 2005 Jan 7.

PMID:
15683929
40.

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes.

Aurell H, Farge P, Meugnier H, Gouy M, Forey F, Lina G, Vandenesch F, Etienne J, Jarraud S.

Appl Environ Microbiol. 2005 Jan;71(1):282-9.

42.

Invertebrate data predict an early emergence of vertebrate fibrillar collagen clades and an anti-incest model.

Aouacheria A, Cluzel C, Lethias C, Gouy M, Garrone R, Exposito JY.

J Biol Chem. 2004 Nov 12;279(46):47711-9. Epub 2004 Sep 8.

43.

Characterization of a gemcitabine-resistant murine leukemic cell line: reversion of in vitro resistance by a mononucleotide prodrug.

Jordheim LP, Cros E, Gouy MH, Galmarini CM, Peyrottes S, Mackey J, Perigaud C, Dumontet C.

Clin Cancer Res. 2004 Aug 15;10(16):5614-21.

44.

Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences.

Le Roux F, Gay M, Lambert C, Nicolas JL, Gouy M, Berthe F.

Dis Aquat Organ. 2004 Mar 10;58(2-3):143-50.

45.

Integrated databanks access and sequence/structure analysis services at the PBIL.

Perrière G, Combet C, Penel S, Blanchet C, Thioulouse J, Geourjon C, Grassot J, Charavay C, Gouy M, Duret L, Deléage G.

Nucleic Acids Res. 2003 Jul 1;31(13):3393-9.

46.

Functional and evolutionary analysis of a eukaryotic parasitic genome.

Vivarès CP, Gouy M, Thomarat F, Méténier G.

Curr Opin Microbiol. 2002 Oct;5(5):499-505. Review.

PMID:
12354558
47.

Automatic RNA secondary structure prediction with a comparative approach.

Tahi F, Gouy M, Régnier M.

Comput Chem. 2002 Jul;26(5):521-30.

PMID:
12144180
48.
49.
50.

Bacterial molecular phylogeny using supertree approach.

Daubin V, Gouy M, Perrière G.

Genome Inform. 2001;12:155-64.

PMID:
11791234

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